Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

27257496 .. 27259416

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1246400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGCGAAGAAGTGAAGGCGGCGCCGGTGGTTCCGGAGTCAGTGCTGAAGAAGAGAAAGAGAGAGGAGCAATGGGCCCTTGCTAAAAAGCAAGACCTCGAATCTGCCAAGAAGAAGAGCTCCGAAAACCGCAAGCTGATCTACAACCGGGCCAAGCAGTACGCCAAGGAGTACGATGAGGAGCAAAAGGAGTTGATTCGATTGAAGCGCGAAGCGAAACTGAAGGGTGGGTTTTATGTAAACCCAGAGGCCAAGCTGTTGTTCATCATCAGGATTCGTGGAATCAATGCTATTGACCCAAAAACTAAGAAGATTTTGCAGCTTCTTCGTTTGAGACAGATATTCAATGGTGTGTTCTTGAAAGTAAACAAGGCCACATTGAACATGCTTCACAGGGTTGAACCCTATGTGACCTACGGGTATCCTAATTTGAAGAGTGTCAAGGAGTTAATCTACAAGAGGGGTTATGGGAAACTTAACAAGCAGAGAACTGCTTTGACTGACAATTCAATTGTTGAACAGGCTTTGGGCAAGTTTGGAATTATCTGTGTGGAGGATCTTATCCATGAGATCTTGACTGTTGGGCCTCACTTCAAGGAGGCAAATAACTTCCTTTGGCCATTTAAGCTTAAGGCTCCTCTCGGTGGTCTGAAGAAGAAGAGAAATCACTATGTTGAAGGCGGTGATGCTGGAAACCGTGAAGACTATATCAATGAGCTCATCAGGAGGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

RVT_3 Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

246

Amino Acids

28.45

Weight (kDa)

9.9

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	11 - 81	1.4e-23	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	87 - 137	1.5e-17	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccII	CGCG	1 cut(s)	210
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	3 cut(s)	20, 130, 681
AclWI	GGATC	1 cut(s)	564
AcoI	YGGCCR	1 cut(s)	617
AcuI	CTGAAG	3 cut(s)	68, 242, 671
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	2 cut(s)	161, 173
AfiI	CCNNNNNNNGG	1 cut(s)	644
AflII	CTTAAG	1 cut(s)	629
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	6 cut(s)	120, 136, 256, 322, 628, 718
AluI	AGCT	6 cut(s)	120, 136, 256, 322, 628, 718
Alw21I	GWGCWC	2 cut(s)	122, 720
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	1 cut(s)	564
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	6 cut(s)	75, 150, 249, 372, 584, 617
ApaI	GGGCCC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	319
AspLEI	GCGC	2 cut(s)	25, 210
AspS9I	GGNCC	4 cut(s)	75, 76, 150, 584
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	695
BaeGI	GKGCMC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	3 cut(s)	79, 122, 720
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	2 cut(s)	122, 720
BbvI	GCAGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciVI	GTATCC	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	26
BfrI	CTTAAG	1 cut(s)	629
BfuI	GTATCC	1 cut(s)	432
BglII	AGATCT	1 cut(s)	570
BisI	GCNGC	2 cut(s)	21, 320
BlsI	GCNGC	2 cut(s)	22, 321
Bme1390I	CCNGG	1 cut(s)	149
BmgT120I	GGNCC	4 cut(s)	75, 76, 150, 584
BmiI	GGNNCC	4 cut(s)	24, 33, 77, 636
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	676
BpiI	GAAGAC	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse118I	RCCGGY	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	77
BseAI	TCCGGA	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMI	GCAATG	1 cut(s)	77
BseRI	GAGGAG	3 cut(s)	80, 194, 627
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	6 cut(s)	77, 152, 251, 374, 586, 619
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	122, 720
BsiSI	CCGG	3 cut(s)	26, 35, 148
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	1 cut(s)	328
BsnI	GGCC	6 cut(s)	77, 152, 251, 374, 586, 619
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	79, 122, 720
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	138, 556, 570
BspACI	CCGC	3 cut(s)	20, 130, 681
BspANI	GGCC	6 cut(s)	77, 152, 251, 374, 586, 619
BspEI	TCCGGA	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	4 cut(s)	24, 33, 77, 636
BspPI	GGATC	1 cut(s)	564
BspQI	GCTCTTC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	22
BspTI	CTTAAG	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	138, 556, 570
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	580, 698
Bst6I	CTCTTC	4 cut(s)	47, 110, 428, 653
BstACI	GRCGYC	1 cut(s)	23
BstAFI	CTTAAG	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	735
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 210
BstKTI	GATC	3 cut(s)	141, 559, 573
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	3 cut(s)	138, 556, 570
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	2 cut(s)	556, 570
BstYI	RGATCY	2 cut(s)	556, 570
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	6 cut(s)	77, 152, 251, 374, 586, 619
BtsCI	GGATG	1 cut(s)	735
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	2 cut(s)	25, 210
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	4 cut(s)	75, 76, 150, 584
Csp6I	GTAC	2 cut(s)	160, 172
CviAII	CATG	2 cut(s)	385, 566
CviQI	GTAC	2 cut(s)	160, 172
DdeI	CTNAG	1 cut(s)	306
DinI	GGCGCC	1 cut(s)	24
DpnI	GATC	3 cut(s)	140, 558, 572
DpnII	GATC	3 cut(s)	138, 556, 570
EaeI	YGGCCR	1 cut(s)	617
Eam1104I	CTCTTC	4 cut(s)	47, 110, 428, 653
EarI	CTCTTC	4 cut(s)	47, 110, 428, 653
Ecl136II	GAGCTC	2 cut(s)	120, 718
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	3 cut(s)	79, 122, 720
Eco53kI	GAGCTC	2 cut(s)	120, 718
Eco57I	CTGAAG	3 cut(s)	68, 242, 671
EcoICRI	GAGCTC	2 cut(s)	120, 718
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	3 cut(s)	79, 122, 720
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	388, 569
FaiI	YATR	7 cut(s)	237, 386, 408, 468, 567, 672, 708
FatI	CATG	2 cut(s)	384, 565
Fnu4HI	GCNGC	2 cut(s)	21, 320
FriOI	GRGCYC	3 cut(s)	79, 122, 720
Fsp4HI	GCNGC	2 cut(s)	21, 320
GlaI	GCGC	2 cut(s)	24, 209
GluI	GCNGC	2 cut(s)	21, 320
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	6 cut(s)	77, 152, 251, 374, 586, 619
HapII	CCGG	3 cut(s)	26, 35, 148
HhaI	GCGC	2 cut(s)	25, 210
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	388, 569
Hin6I	GCGC	2 cut(s)	23, 208
HinP1I	GCGC	2 cut(s)	23, 208
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	5 cut(s)	38, 101, 196, 274, 282
HpaII	CCGG	3 cut(s)	26, 35, 148
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	2 cut(s)	241, 367
Hpy188I	TCNGA	2 cut(s)	124, 651
Hpy188III	TCNNGA	5 cut(s)	35, 271, 358, 574, 724
Hpy8I	GTNNAC	2 cut(s)	241, 367
HpyAV	CCTTC	3 cut(s)	10, 217, 671
HpyCH4III	ACNGT	2 cut(s)	580, 698
HpyCH4V	TGCA	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpyF3I	CTNAG	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	388, 569
HspAI	GCGC	2 cut(s)	23, 208
KasI	GGCGCC	1 cut(s)	22
Kpn2I	TCCGGA	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	138, 556, 570
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	4 cut(s)	67, 125, 181, 640
LpnPI	CCDG	9 cut(s)	39, 48, 161, 256, 258, 379, 506, 675, 709
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	676
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	3 cut(s)	140, 558, 572
MboI	GATC	3 cut(s)	138, 556, 570
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	2 cut(s)	556, 570
MhlI	GDGCHC	3 cut(s)	79, 122, 720
MlsI	TGGCCA	1 cut(s)	619
MluCI	AATT	5 cut(s)	427, 505, 510, 540, 733
MluNI	TGGCCA	1 cut(s)	619
Mly113I	GGCGCC	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	47
Mox20I	TGGCCA	1 cut(s)	619
MroI	TCCGGA	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	619
MseI	TTAA	4 cut(s)	449, 477, 624, 630
Msp20I	TGGCCA	1 cut(s)	619
MspCI	CTTAAG	1 cut(s)	629
MspI	CCGG	3 cut(s)	26, 35, 148
MspR9I	CCNGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	625
NarI	GGCGCC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	138, 556, 570
NlaIII	CATG	2 cut(s)	388, 569
NlaIV	GGNNCC	4 cut(s)	24, 33, 77, 636
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	110
PfeI	GAWTC	4 cut(s)	101, 196, 274, 282
PkrI	GCNGC	2 cut(s)	22, 321
PleI	GAGTC	1 cut(s)	46
PluTI	GGCGCC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	46
Psp124BI	GAGCTC	2 cut(s)	122, 720
PspN4I	GGNNCC	4 cut(s)	24, 33, 77, 636
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	4 cut(s)	75, 76, 150, 584
PsuI	RGATCY	2 cut(s)	556, 570
RsaI	GTAC	2 cut(s)	161, 173
RsaNI	GTAC	2 cut(s)	160, 172
SacI	GAGCTC	2 cut(s)	122, 720
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	4 cut(s)	449, 477, 624, 630
SatI	GCNGC	2 cut(s)	21, 320
Sau3AI	GATC	3 cut(s)	138, 556, 570
Sau96I	GGNCC	4 cut(s)	75, 76, 150, 584
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	3 cut(s)	79, 122, 720
SetI	ASST	8 cut(s)	99, 122, 138, 258, 324, 416, 630, 720
SfaNI	GCATC	1 cut(s)	676
SfoI	GGCGCC	1 cut(s)	24
SgrAI	CRCCGGYG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	5 cut(s)	427, 505, 510, 540, 733
SsiI	CCGC	3 cut(s)	20, 130, 681
SspDI	GGCGCC	1 cut(s)	22
SstI	GAGCTC	2 cut(s)	122, 720
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	580, 698
TaqI	TCGA	2 cut(s)	99, 199
TasI	AATT	5 cut(s)	427, 505, 510, 540, 733
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	4 cut(s)	101, 196, 274, 282
Tru1I	TTAA	4 cut(s)	449, 477, 624, 630
Tru9I	TTAA	4 cut(s)	449, 477, 624, 630
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	48
Vha464I	CTTAAG	1 cut(s)	629
XceI	RCATGY	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.