Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Reverse (-)

18248830 .. 18251156

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTGAATCCAAGGTAGTGGTTCCAGAGTCTGTGCTAAAGAAGATCAAGAGGCAAGAGGAATGGGCATTGGCCAAGAAAGATGAAGCTGTAGCTGCTAAGAAGAAGAGTGTTGAGGCCCGCAAGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTTGAGACAGATCTTCAATGGTGTGTTTCTTAAGGTGAACAAGGCAACAGTAAACATGCTGCGCCGAGTTGAACCATACGTGACTTACGGATACCCAAACTTGAAGAGCGTTAAGGAACTGATCTACAAAAGAGGTTATGGAAAGCTGAACCACCAGAGGATAGCACTTACTGACAACTCCATTGTGGATCAGGCTCTCGGAAAGCATGGGATCATCTGCGTTGAGGATCTCATCCACGAGATCATGACTGTTGGACCTCACTTCAAGGAAGCCAACAACTTCCTGTGGCCATTCCAATTGAAGGCACCACTCGGTGGCCTTAAGAAGAAGAGAAACCACTACGTCGAAGGTGGTGATGCTGGAAACAGGGAGAATTTCATCAACGAGCTTGTCAGGAGAATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030312 GO:0031090 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

242

Amino Acids

27.94

Weight (kDa)

9.93

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	13 - 84	2.3e-25	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	89 - 139	4.3e-18	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	625
AccB7I	CCANNNNNTGG	1 cut(s)	635
AciI	CCGC	2 cut(s)	121, 199
AclWI	GGATC	4 cut(s)	181, 516, 539, 555
AcoI	YGGCCR	2 cut(s)	72, 608
AcsI	RAATTY	1 cut(s)	694
AdeI	CACNNNGTG	1 cut(s)	635
AfiI	CCNNNNNNNGG	2 cut(s)	622, 635
AflII	CTTAAG	2 cut(s)	350, 641
AgsI	TTSAA	8 cut(s)	136, 196, 214, 337, 392, 424, 586, 622
AluBI	AGCT	7 cut(s)	89, 95, 127, 143, 313, 466, 709
AluI	AGCT	7 cut(s)	89, 95, 127, 143, 313, 466, 709
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	4 cut(s)	181, 516, 539, 555
AlwNI	CAGNNNCTG	2 cut(s)	32, 316
AoxI	GGCC	4 cut(s)	72, 117, 608, 637
ApeKI	GCWGC	3 cut(s)	95, 310, 379
ApoI	RAATTY	1 cut(s)	694
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	2 cut(s)	118, 575
AsuHPI	GGTGA	2 cut(s)	367, 686
AvaII	GGWCC	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	237
BalI	TGGCCA	2 cut(s)	74, 610
BanI	GGYRCC	1 cut(s)	625
BauI	CACGAG	1 cut(s)	557
BbvI	GCAGC	3 cut(s)	82, 322, 366
BciVI	GTATCC	2 cut(s)	275, 404
BcoDI	GTCTC	1 cut(s)	319
BfmI	CTRYAG	2 cut(s)	90, 308
BfrI	CTTAAG	2 cut(s)	350, 641
BfuI	GTATCC	2 cut(s)	275, 404
BglII	AGATCT	1 cut(s)	330
BisI	GCNGC	3 cut(s)	96, 311, 380
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	3 cut(s)	97, 312, 381
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	118, 575
BmiI	GGNNCC	2 cut(s)	24, 627
BmsI	GCATC	1 cut(s)	667
Bpu1102I	GCTNAGC	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	12, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	622, 635
Bse21I	CCTNAGG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	12, 268
BseGI	GGATG	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	622, 635
BseMII	CTCAG	3 cut(s)	135, 159, 228
BseXI	GCAGC	3 cut(s)	82, 322, 366
BshFI	GGCC	4 cut(s)	74, 119, 610, 639
BshNI	GGYRCC	1 cut(s)	625
BslI	CCNNNNNNNGG	2 cut(s)	622, 635
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	4 cut(s)	74, 119, 610, 639
Bsp143I	GATC	8 cut(s)	45, 186, 330, 441, 508, 531, 547, 561
Bsp1720I	GCTNAGC	1 cut(s)	144
BspACI	CCGC	2 cut(s)	121, 199
BspANI	GGCC	4 cut(s)	74, 119, 610, 639
BspCNI	CTCAG	3 cut(s)	136, 160, 229
BspHI	TCATGA	1 cut(s)	564
BspLI	GGNNCC	2 cut(s)	24, 627
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	4 cut(s)	181, 516, 539, 555
BspQI	GCTCTTC	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	625
BspTI	CTTAAG	2 cut(s)	350, 641
BssECI	CCNNGG	2 cut(s)	12, 268
BssMI	GATC	8 cut(s)	45, 186, 330, 441, 508, 531, 547, 561
BssSI	CACGAG	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	557
Bst4CI	ACNGT	2 cut(s)	370, 571
Bst6I	CTCTTC	3 cut(s)	101, 419, 644
BstAFI	CTTAAG	2 cut(s)	350, 641
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	121, 125
BstDEI	CTNAG	6 cut(s)	99, 144, 168, 207, 237, 243
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	8 cut(s)	48, 189, 333, 444, 511, 534, 550, 564
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	8 cut(s)	45, 186, 330, 441, 508, 531, 547, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 316
BstNSI	RCATGY	1 cut(s)	379
BstSFI	CTRYAG	2 cut(s)	90, 308
BstV1I	GCAGC	3 cut(s)	82, 322, 366
BstX2I	RGATCY	2 cut(s)	330, 547
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	2 cut(s)	330, 547
Bsu36I	CCTNAGG	1 cut(s)	237
BsuI	GTATCC	2 cut(s)	275, 404
BsuRI	GGCC	4 cut(s)	74, 119, 610, 639
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	552
Cac8I	GCNNGC	2 cut(s)	121, 125
CaiI	CAGNNNCTG	2 cut(s)	32, 316
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	118, 575
CviAII	CATG	3 cut(s)	376, 527, 565
DdeI	CTNAG	6 cut(s)	99, 144, 168, 207, 237, 243
DpnI	GATC	8 cut(s)	47, 188, 332, 443, 510, 533, 549, 563
DpnII	GATC	8 cut(s)	45, 186, 330, 441, 508, 531, 547, 561
DraIII	CACNNNGTG	1 cut(s)	635
EaeI	YGGCCR	2 cut(s)	72, 608
Eam1104I	CTCTTC	3 cut(s)	101, 419, 644
EarI	CTCTTC	3 cut(s)	101, 419, 644
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	575
Eco81I	CCTNAGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	379, 530, 568
FaiI	YATR	6 cut(s)	153, 377, 397, 459, 528, 566
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 236, 268
FatI	CATG	3 cut(s)	375, 526, 564
FauI	CCCGC	2 cut(s)	128, 192
Fnu4HI	GCNGC	3 cut(s)	96, 311, 380
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	3 cut(s)	96, 311, 380
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	3 cut(s)	96, 311, 380
HaeIII	GGCC	4 cut(s)	74, 119, 610, 639
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	3 cut(s)	379, 530, 568
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	3 cut(s)	8, 29, 304
HphI	GGTGA	2 cut(s)	367, 686
Hpy166II	GTNNAC	3 cut(s)	232, 358, 373
Hpy188I	TCNGA	2 cut(s)	191, 521
Hpy188III	TCNNGA	5 cut(s)	26, 49, 136, 565, 715
Hpy8I	GTNNAC	3 cut(s)	232, 358, 373
Hpy99I	CGWCG	1 cut(s)	668
HpyAV	CCTTC	3 cut(s)	166, 616, 662
HpyCH4III	ACNGT	2 cut(s)	370, 571
HpyCH4IV	ACGT	3 cut(s)	228, 399, 663
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 316
HpyF3I	CTNAG	6 cut(s)	99, 144, 168, 207, 237, 243
HpySE526I	ACGT	3 cut(s)	228, 399, 663
Hsp92II	CATG	3 cut(s)	379, 530, 568
HspAI	GCGC	1 cut(s)	382
Kzo9I	GATC	8 cut(s)	45, 186, 330, 441, 508, 531, 547, 561
LguI	GCTCTTC	1 cut(s)	419
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	9 cut(s)	39, 249, 329, 488, 497, 617, 666, 673, 700
Lsp1109I	GCAGC	3 cut(s)	82, 322, 366
LweI	GCATC	1 cut(s)	667
MaeII	ACGT	3 cut(s)	228, 399, 663
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	8 cut(s)	47, 188, 332, 443, 510, 533, 549, 563
MboI	GATC	8 cut(s)	45, 186, 330, 441, 508, 531, 547, 561
MboII	GAAGA	9 cut(s)	55, 115, 118, 124, 313, 325, 436, 658, 661
MfeI	CAATTG	1 cut(s)	617
MflI	RGATCY	2 cut(s)	330, 547
MlsI	TGGCCA	2 cut(s)	74, 610
MluCI	AATT	3 cut(s)	617, 694, 724
MluNI	TGGCCA	2 cut(s)	74, 610
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	553
Mox20I	TGGCCA	2 cut(s)	74, 610
MscI	TGGCCA	2 cut(s)	74, 610
MseI	TTAA	3 cut(s)	351, 432, 642
Msp20I	TGGCCA	2 cut(s)	74, 610
MspCI	CTTAAG	2 cut(s)	350, 641
MunI	CAATTG	1 cut(s)	617
MwoI	GCNNNNNNNGC	2 cut(s)	95, 316
NdeII	GATC	8 cut(s)	45, 186, 330, 441, 508, 531, 547, 561
NlaIII	CATG	3 cut(s)	379, 530, 568
NlaIV	GGNNCC	2 cut(s)	24, 627
NmeAIII	GCCGAG	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	1 cut(s)	379
PagI	TCATGA	1 cut(s)	564
PciSI	GCTCTTC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	8, 304
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	3 cut(s)	97, 312, 381
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	24, 627
PspPI	GGNCC	2 cut(s)	118, 575
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	2 cut(s)	32, 316
PsuI	RGATCY	2 cut(s)	330, 547
SapI	GCTCTTC	1 cut(s)	419
SaqAI	TTAA	3 cut(s)	351, 432, 642
SatI	GCNGC	3 cut(s)	96, 311, 380
Sau3AI	GATC	8 cut(s)	45, 186, 330, 441, 508, 531, 547, 561
Sau96I	GGNCC	2 cut(s)	118, 575
SchI	GAGTC	1 cut(s)	38
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	2 cut(s)	90, 308
SinI	GGWCC	1 cut(s)	575
SmlI	CTYRAG	2 cut(s)	350, 641
SmoI	CTYRAG	2 cut(s)	350, 641
Sse9I	AATT	3 cut(s)	617, 694, 724
SsiI	CCGC	2 cut(s)	121, 199
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	370, 571
TaiI	ACGT	3 cut(s)	231, 402, 666
TaqI	TCGA	1 cut(s)	666
TasI	AATT	3 cut(s)	617, 694, 724
TfiI	GAWTC	2 cut(s)	8, 304
Tru1I	TTAA	3 cut(s)	351, 432, 642
Tru9I	TTAA	3 cut(s)	351, 432, 642
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	3 cut(s)	95, 310, 379
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	99, 688
TspGWI	ACGGA	2 cut(s)	257, 423
Van91I	CCANNNNNTGG	1 cut(s)	635
Vha464I	CTTAAG	2 cut(s)	350, 641
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	694
XceI	RCATGY	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.