Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

12941713 .. 12944417

Gene Structure 2705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1160400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGTGAAGAAGTCAAGGTAGTGGTTCCAGAGTCCGTGTTGAAAAAGAGAAAGAGGGAAGAGGAGTGGGCCTTGGCCAAGGAACAGGAGCGTGTAGCTGCCAACAAGAAGAAGGCTGAGAACCGGAAGCTCATTTTCAACAGAGCAAAGCAGTATTCTGAGGAGTATGAGCAGCAGGAGAAAGAGTTGATCCAGTTGAAGCGTGAGGCTAAGTTGAAAGGTGGATTTTATGTTGACCCAGAGGCTAAGCTCTTGTTCATTATTCGTATCCGTGGTATCAACGCCATTGACCCAAAGACCAAGAAGATCTTGCAACTCTTGAGGCTGAGACAGATCTTCAATGGAGTCTTCCTGAAAGTTAACAAAGCCACCCTCAATATGCTTCACAGGGTTGAACCATATGTTACTTACGGGTACCCCAACTTGAAGAGTGTCAAGGAATTGATATACAAGAGAGGGTATGGTAAGCTGAACAAGCAGAGGATTGCCTTAACTGACAACGCCATTGTTGAGGAGGCTCTTGGCAAATATGGCATCATCTGCACGGAAGATCTTATTCACGAGATCTTGACAGTTGGTCCTCATTTCAAGGAGGCCAATAACTTTCTATGGCCCTTTAAGCTTAAGGCACCACTGGGCGGTCTTAAGAAGAAGAGGAACCACTACGTTGAAGGTGGAGATGCTGGAAACCGTGAGAACTACATCAACGAGCTTATTAGGAGAATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

244

Amino Acids

28.34

Weight (kDa)

9.77

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	9 - 80	3.2e-24	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	85 - 135	1.5e-17	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	414
AccB1I	GGYRCC	2 cut(s)	414, 628
AciI	CCGC	1 cut(s)	639
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	75
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	638
AflII	CTTAAG	2 cut(s)	623, 644
AgsI	TTSAA	9 cut(s)	43, 139, 199, 217, 340, 395, 427, 589, 671
AhdI	GACNNNNNGTC	1 cut(s)	576
AluBI	AGCT	6 cut(s)	98, 130, 250, 469, 622, 712
AluI	AGCT	6 cut(s)	98, 130, 250, 469, 622, 712
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	184
AoxI	GGCC	4 cut(s)	69, 75, 594, 611
ApeKI	GCWGC	2 cut(s)	98, 172
Asp718I	GGTACC	1 cut(s)	414
AspS9I	GGNCC	3 cut(s)	69, 578, 612
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	77
BanI	GGYRCC	2 cut(s)	414, 628
BauI	CACGAG	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	85, 184
BciVI	GTATCC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	322
BfrI	CTTAAG	2 cut(s)	623, 644
BfuI	GTATCC	1 cut(s)	278
BglII	AGATCT	4 cut(s)	306, 333, 550, 564
BisI	GCNGC	2 cut(s)	99, 173
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	2 cut(s)	100, 174
Bme18I	GGWCC	1 cut(s)	578
BmeRI	GACNNNNNGTC	1 cut(s)	576
BmgT120I	GGNCC	3 cut(s)	69, 578, 612
BmiI	GGNNCC	4 cut(s)	27, 416, 630, 659
BmrI	ACTGGG	1 cut(s)	644
BmsI	GCATC	2 cut(s)	543, 670
BmuI	ACTGGG	1 cut(s)	644
BpiI	GAAGAC	1 cut(s)	340
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	340
BsaJI	CCNNGG	3 cut(s)	72, 78, 271
BsaWI	WCCGGW	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	2 cut(s)	193, 639
BseDI	CCNNGG	3 cut(s)	72, 78, 271
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMII	CTCAG	3 cut(s)	108, 150, 317
BseNI	ACTGG	2 cut(s)	193, 639
BseRI	GAGGAG	3 cut(s)	77, 176, 527
BseXI	GCAGC	2 cut(s)	85, 184
BsgI	GTGCAG	1 cut(s)	526
BshFI	GGCC	4 cut(s)	71, 77, 596, 613
BshNI	GGYRCC	2 cut(s)	414, 628
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	4 cut(s)	71, 77, 596, 613
Bsp143I	GATC	5 cut(s)	189, 306, 333, 550, 564
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	639
BspANI	GGCC	4 cut(s)	71, 77, 596, 613
BspCNI	CTCAG	3 cut(s)	109, 151, 318
BspLI	GGNNCC	4 cut(s)	27, 416, 630, 659
BspPI	GGATC	1 cut(s)	184
BspT107I	GGYRCC	2 cut(s)	414, 628
BspTI	CTTAAG	2 cut(s)	623, 644
BsrI	ACTGG	2 cut(s)	193, 639
BssECI	CCNNGG	3 cut(s)	72, 78, 271
BssMI	GATC	5 cut(s)	189, 306, 333, 550, 564
BssSI	CACGAG	1 cut(s)	560
BssT1I	CCWWGG	2 cut(s)	72, 78
Bst2BI	CACGAG	1 cut(s)	560
Bst4CI	ACNGT	2 cut(s)	574, 692
Bst6I	CTCTTC	3 cut(s)	54, 422, 647
BstAFI	CTTAAG	2 cut(s)	623, 644
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstDEI	CTNAG	5 cut(s)	117, 159, 210, 246, 326
BstDSI	CCRYGG	1 cut(s)	271
BstKTI	GATC	5 cut(s)	192, 309, 336, 553, 567
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	5 cut(s)	189, 306, 333, 550, 564
BstMWI	GCNNNNNNNGC	4 cut(s)	475, 531, 540, 619
BstV1I	GCAGC	2 cut(s)	85, 184
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	4 cut(s)	306, 333, 550, 564
BstYI	RGATCY	4 cut(s)	306, 333, 550, 564
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	4 cut(s)	71, 77, 596, 613
BtgI	CCRYGG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	632
Cfr13I	GGNCC	3 cut(s)	69, 578, 612
Csp6I	GTAC	1 cut(s)	415
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	5 cut(s)	117, 159, 210, 246, 326
DpnI	GATC	5 cut(s)	191, 308, 335, 552, 566
DpnII	GATC	5 cut(s)	189, 306, 333, 550, 564
DriI	GACNNNNNGTC	1 cut(s)	576
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	3 cut(s)	54, 422, 647
Eam1105I	GACNNNNNGTC	1 cut(s)	576
EarI	CTCTTC	3 cut(s)	54, 422, 647
Eco130I	CCWWGG	2 cut(s)	72, 78
Eco47I	GGWCC	1 cut(s)	578
EcoT14I	CCWWGG	2 cut(s)	72, 78
ErhI	CCWWGG	2 cut(s)	72, 78
FaiI	YATR	9 cut(s)	168, 231, 380, 400, 402, 448, 462, 531, 610
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FauNDI	CATATG	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	99, 173
Fsp4HI	GCNGC	2 cut(s)	99, 173
GluI	GCNGC	2 cut(s)	99, 173
HaeIII	GGCC	4 cut(s)	71, 77, 596, 613
HapII	CCGG	1 cut(s)	124
HincII	GTYRAC	2 cut(s)	235, 361
HindII	GTYRAC	2 cut(s)	235, 361
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	2 cut(s)	32, 345
HpaI	GTTAAC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	235, 361
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	5 cut(s)	29, 319, 352, 560, 568
Hpy8I	GTNNAC	2 cut(s)	235, 361
HpyAV	CCTTC	2 cut(s)	106, 665
HpyCH4III	ACNGT	2 cut(s)	574, 692
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	2 cut(s)	313, 543
HpyF10VI	GCNNNNNNNGC	4 cut(s)	475, 531, 540, 619
HpyF3I	CTNAG	5 cut(s)	117, 159, 210, 246, 326
HpySE526I	ACGT	1 cut(s)	666
KpnI	GGTACC	1 cut(s)	418
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	5 cut(s)	189, 306, 333, 550, 564
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	85, 184
LweI	GCATC	2 cut(s)	543, 670
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	5 cut(s)	191, 308, 335, 552, 566
MboI	GATC	5 cut(s)	189, 306, 333, 550, 564
MflI	RGATCY	4 cut(s)	306, 333, 550, 564
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	2 cut(s)	440, 727
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	2 cut(s)	41, 354
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	5 cut(s)	360, 491, 618, 624, 645
Msp20I	TGGCCA	1 cut(s)	77
MspCI	CTTAAG	2 cut(s)	623, 644
MspI	CCGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	4 cut(s)	475, 531, 540, 619
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	5 cut(s)	189, 306, 333, 550, 564
NlaIV	GGNNCC	4 cut(s)	27, 416, 630, 659
PkrI	GCNGC	2 cut(s)	100, 174
PleI	GAGTC	2 cut(s)	40, 353
PpsI	GAGTC	2 cut(s)	40, 353
PspN4I	GGNNCC	4 cut(s)	27, 416, 630, 659
PspPI	GGNCC	3 cut(s)	69, 578, 612
PsuI	RGATCY	4 cut(s)	306, 333, 550, 564
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SaqAI	TTAA	5 cut(s)	360, 491, 618, 624, 645
SatI	GCNGC	2 cut(s)	99, 173
Sau3AI	GATC	5 cut(s)	189, 306, 333, 550, 564
Sau96I	GGNCC	3 cut(s)	69, 578, 612
SchI	GAGTC	2 cut(s)	41, 354
SfaNI	GCATC	2 cut(s)	543, 670
SinI	GGWCC	1 cut(s)	578
SmlI	CTYRAG	3 cut(s)	319, 623, 644
SmoI	CTYRAG	3 cut(s)	319, 623, 644
Sse9I	AATT	2 cut(s)	440, 727
SsiI	CCGC	1 cut(s)	639
StyI	CCWWGG	2 cut(s)	72, 78
TaaI	ACNGT	2 cut(s)	574, 692
TaiI	ACGT	1 cut(s)	669
TasI	AATT	2 cut(s)	440, 727
Tru1I	TTAA	5 cut(s)	360, 491, 618, 624, 645
Tru9I	TTAA	5 cut(s)	360, 491, 618, 624, 645
TscAI	CASTG	1 cut(s)	639
TseI	GCWGC	2 cut(s)	98, 172
TspDTI	ATGAA	1 cut(s)	247
TspGWI	ACGGA	3 cut(s)	25, 260, 560
TspRI	CASTG	1 cut(s)	639
Vha464I	CTTAAG	2 cut(s)	623, 644
VpaK11BI	GGWCC	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.