Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

5220070 .. 5221775

Gene Structure 1706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G073100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGCGAAGAAGTGAAGGCAGGACCAGTGGTTCCAGAATCAGTGTTGAAGAAGAGAAAGAGAGAGGAGCAATGGGCTCTTGCCAAAAAGCAAGGCCTTGAATCTGCAAAGAAGAAGAACTCGGAAAACCGCAAGTTGATTTACAACCGGGCCAAGCAGTATGCCAAGGAGTATGATGAACAGCAAAAGGAGTTGATTAGTTTGAAGCGTGAGGCGAAGCTGAAGGGTGGGTTTTATGTCAACCCAGAGGCCAAGCTGTTGTTCATTGTCAGGATTCGTGGAATCAATGCCATTGACCCAAAAACTAAGAAGATTTTGCAACTTCTGCGTTTGAGACAGATATTCAATGGTGTCTTCTTGAAAGTAAACAAGGCCACATTGAACATGCTGCATAGGGTTGAACCCTATGTGACTTACGGGTATCCTAATTTGAAGAGTGTCAAAGAACTAATCTACAAGAGGGGTTATGGGAAACTTAACAAACAGAGAACCGCTTTGACTGACAATTCAATTGTTGAACAGGCTTTGGGTAAGTTTGGAATTATCTGCGTGGAGGACCTCATCCATGAGATATTGACTGTTGGACCTCACTTCAAGGAGGCAAATAACTTTCTCTGGCCATTTAAGCTCAAGGCACCCCTGGGTGGTCTAAAGAAGAAGAGAAACCACTATGTCGAAGGTGGTGATGCTGGAAACCGTGAAGATTACATCAACGAGCTCATCAGGAGGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

RVT_3 Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

246

Amino Acids

28.32

Weight (kDa)

9.94

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	634
AciI	CCGC	2 cut(s)	130, 492
AcoI	YGGCCR	1 cut(s)	617
AcuI	CTGAAG	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	639
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AloI	GAACNNNNNNTCC	2 cut(s)	15, 47
AluBI	AGCT	4 cut(s)	220, 256, 628, 718
AluI	AGCT	4 cut(s)	220, 256, 628, 718
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	1 cut(s)	328
AoxI	GGCC	5 cut(s)	94, 150, 249, 372, 617
ApeKI	GCWGC	1 cut(s)	388
AspS9I	GGNCC	4 cut(s)	23, 150, 556, 584
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	695
AvaII	GGWCC	3 cut(s)	23, 556, 584
BalI	TGGCCA	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	634
BanII	GRGCYC	2 cut(s)	79, 720
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	375
BciT130I	CCWGG	1 cut(s)	641
BciVI	GTATCC	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	2 cut(s)	149, 641
Bme18I	GGWCC	3 cut(s)	23, 556, 584
BmgT120I	GGNCC	4 cut(s)	23, 150, 556, 584
BmiI	GGNNCC	2 cut(s)	33, 636
BmrFI	CCNGG	2 cut(s)	149, 641
BmsI	GCATC	1 cut(s)	676
BpiI	GAAGAC	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	165, 639, 640
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	3 cut(s)	165, 639, 640
BseGI	GGATG	2 cut(s)	561, 735
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMI	GCAATG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	375
BshFI	GGCC	5 cut(s)	96, 152, 251, 374, 619
BshNI	GGYRCC	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	1 cut(s)	328
BsnI	GGCC	5 cut(s)	96, 152, 251, 374, 619
Bsp1286I	GDGCHC	2 cut(s)	79, 720
BspACI	CCGC	2 cut(s)	130, 492
BspANI	GGCC	5 cut(s)	96, 152, 251, 374, 619
BspLI	GGNNCC	2 cut(s)	33, 636
BspT107I	GGYRCC	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	165, 639, 640
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	2 cut(s)	580, 698
Bst6I	CTCTTC	3 cut(s)	47, 428, 653
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	561, 735
BstMAI	GTCTC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 625
BstNI	CCWGG	1 cut(s)	641
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	147, 639
BstV1I	GCAGC	1 cut(s)	375
BstV2I	GAAGAC	1 cut(s)	346
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	5 cut(s)	96, 152, 251, 374, 619
BtsCI	GGATG	2 cut(s)	561, 735
BtsIMutI	CAGTG	2 cut(s)	33, 48
Cfr13I	GGNCC	4 cut(s)	23, 150, 556, 584
CviAII	CATG	2 cut(s)	385, 566
DdeI	CTNAG	1 cut(s)	306
EaeI	YGGCCR	1 cut(s)	617
Eam1104I	CTCTTC	3 cut(s)	47, 428, 653
EarI	CTCTTC	3 cut(s)	47, 428, 653
Ecl136II	GAGCTC	1 cut(s)	718
Eco130I	CCWWGG	1 cut(s)	165
Eco147I	AGGCCT	1 cut(s)	96
Eco24I	GRGCYC	2 cut(s)	79, 720
Eco47I	GGWCC	3 cut(s)	23, 556, 584
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	718
EcoO109I	RGGNCCY	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	2 cut(s)	79, 720
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	388, 569
FaiI	YATR	9 cut(s)	162, 174, 237, 386, 393, 408, 468, 567, 672
FatI	CATG	2 cut(s)	384, 565
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	2 cut(s)	79, 720
Fsp4HI	GCNGC	1 cut(s)	389
GluI	GCNGC	1 cut(s)	389
HaeIII	GGCC	5 cut(s)	96, 152, 251, 374, 619
HapII	CCGG	1 cut(s)	148
Hin1II	CATG	2 cut(s)	388, 569
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	4 cut(s)	38, 101, 274, 282
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	2 cut(s)	241, 367
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	4 cut(s)	35, 271, 358, 724
Hpy8I	GTNNAC	2 cut(s)	241, 367
HpyAV	CCTTC	3 cut(s)	10, 217, 671
HpyCH4III	ACNGT	2 cut(s)	580, 698
HpyCH4V	TGCA	3 cut(s)	107, 319, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 625
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	388, 569
LmnI	GCTCC	1 cut(s)	67
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	1 cut(s)	676
MaeIII	GTNAC	1 cut(s)	409
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	2 cut(s)	79, 720
MlsI	TGGCCA	1 cut(s)	619
MluCI	AATT	5 cut(s)	427, 505, 510, 540, 733
MluNI	TGGCCA	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	9 cut(s)	58, 205, 241, 453, 547, 569, 592, 597, 720
Mox20I	TGGCCA	1 cut(s)	619
MscI	TGGCCA	1 cut(s)	619
MseI	TTAA	2 cut(s)	477, 624
Msp20I	TGGCCA	1 cut(s)	619
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	149, 641
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	2 cut(s)	325, 625
NciI	CCSGG	1 cut(s)	149
NlaIII	CATG	2 cut(s)	388, 569
NlaIV	GGNNCC	2 cut(s)	33, 636
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	1 cut(s)	388
PasI	CCCWGGG	1 cut(s)	640
PceI	AGGCCT	1 cut(s)	96
PfeI	GAWTC	4 cut(s)	38, 101, 274, 282
PkrI	GCNGC	1 cut(s)	390
PpuMI	RGGWCCY	1 cut(s)	556
Psp124BI	GAGCTC	1 cut(s)	720
Psp5II	RGGWCCY	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	2 cut(s)	33, 636
PspPI	GGNCC	4 cut(s)	23, 150, 556, 584
PspPPI	RGGWCCY	1 cut(s)	556
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	2 cut(s)	477, 624
SatI	GCNGC	1 cut(s)	389
Sau96I	GGNCC	4 cut(s)	23, 150, 556, 584
ScrFI	CCNGG	2 cut(s)	149, 641
SduI	GDGCHC	2 cut(s)	79, 720
SetI	ASST	7 cut(s)	222, 258, 561, 589, 630, 682, 720
SfaNI	GCATC	1 cut(s)	676
SinI	GGWCC	3 cut(s)	23, 556, 584
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	5 cut(s)	427, 505, 510, 540, 733
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	2 cut(s)	130, 492
SstI	GAGCTC	1 cut(s)	720
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	147, 639
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	580, 698
TaqI	TCGA	1 cut(s)	675
TasI	AATT	5 cut(s)	427, 505, 510, 540, 733
TfiI	GAWTC	4 cut(s)	38, 101, 274, 282
Tru1I	TTAA	2 cut(s)	477, 624
Tru9I	TTAA	2 cut(s)	477, 624
TscAI	CASTG	2 cut(s)	33, 48
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	2 cut(s)	192, 253
TspRI	CASTG	2 cut(s)	33, 48
VpaK11BI	GGWCC	3 cut(s)	23, 556, 584
XceI	RCATGY	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.