Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

1359617 .. 1362306

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G019000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGTGAAGAAGTCAAGGTAGTGGTTCCAGAGTCAGTGTTGAAAAAGAGGAAGAGGGAAGAGGAGTGGGCTTTGGCAAAGAAACAGGGGCTTGAAGCTGCCAAAAAAAAGAATGCTGACAATCGGAAGCTAATTTACAACCGAGCAAAGCAATATTCTGAGGAGTACAAGGAACAGGAAAAGGAGTTGATCCGGTTGAAGCGTGAGGCTAAGTTGAAAGGTGGATTTTATGTTGATCCAGAGGCTAAGCTGTTGTTCATCATTCGAATTCGTGGTATCAATGCAATTGACCCAAAGACCAAGAAGATTTTGCAACTCTTGCGTTTGAGACAGATCTTTAATGGTGTCTTCCTGAAAGTTAACAAGGCCACCCTCAACATGCTTCACAGGGTTGAACCTTATGTCACTTATGGGTATCCCAACTTGAAGAGTGTAAAAGAGCTGATATACAAGAGAGGTTATGGAAAGCTTAACAAGCAGAGAACTGCCTTGACCGACAACTCTATTGTCGAGCAGGCTTTGGGCAAGCACGGCATTATCTGCACGGAAGATCTTATTCATGAGATCTTGACAGTTGGACCTCACTTTAAGGAAGCAAACAACTTTCTATGGCCATTCAAGCTGAAGGCACCACTGGGTGGCCTTAAGAAGAAGAGGAACCACTATGTTGAAGGTGGAGATGCCGGAAACCGTGAGAATTACATCAACGAGCTTATTAGAAGAATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

244

Amino Acids

28.26

Weight (kDa)

9.9

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	628
AccB7I	CCANNNNNTGG	1 cut(s)	638
AclWI	GGATC	2 cut(s)	184, 230
AcoI	YGGCCR	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	644
AdeI	CACNNNGTG	1 cut(s)	638
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	638
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	8 cut(s)	43, 95, 199, 217, 395, 427, 619, 671
AluBI	AGCT	7 cut(s)	98, 130, 250, 442, 469, 622, 712
AluI	AGCT	7 cut(s)	98, 130, 250, 442, 469, 622, 712
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	184, 230
AoxI	GGCC	3 cut(s)	366, 611, 640
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	628
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BbsI	GAAGAC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	547
BciVI	GTATCC	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	322
BfrI	CTTAAG	1 cut(s)	644
BfuI	GTATCC	1 cut(s)	426
BglII	AGATCT	3 cut(s)	333, 550, 564
BisI	GCNGC	1 cut(s)	99
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	3 cut(s)	27, 630, 659
BmrI	ACTGGG	1 cut(s)	644
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	1 cut(s)	644
BpiI	GAAGAC	1 cut(s)	340
Bpu1102I	GCTNAGC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	639
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	639
BseRI	GAGGAG	2 cut(s)	77, 176
BseXI	GCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	526
BshFI	GGCC	3 cut(s)	368, 613, 642
BshNI	GGYRCC	1 cut(s)	628
BsiSI	CCGG	2 cut(s)	193, 684
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	368, 613, 642
Bsp119I	TTCGAA	1 cut(s)	265
Bsp143I	GATC	5 cut(s)	189, 235, 333, 550, 564
Bsp1720I	GCTNAGC	1 cut(s)	246
BspANI	GGCC	3 cut(s)	368, 613, 642
BspCNI	CTCAG	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	3 cut(s)	27, 630, 659
BspPI	GGATC	2 cut(s)	184, 230
BspT104I	TTCGAA	1 cut(s)	265
BspT107I	GGYRCC	1 cut(s)	628
BspTI	CTTAAG	1 cut(s)	644
BsrI	ACTGG	1 cut(s)	639
BssMI	GATC	5 cut(s)	189, 235, 333, 550, 564
Bst4CI	ACNGT	2 cut(s)	574, 692
Bst6I	CTCTTC	4 cut(s)	47, 54, 422, 647
BstAFI	CTTAAG	1 cut(s)	644
BstAPI	GCANNNNNTGC	2 cut(s)	319, 540
BstBI	TTCGAA	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	516, 527
BstDEI	CTNAG	3 cut(s)	159, 210, 246
BstKTI	GATC	5 cut(s)	192, 238, 336, 553, 567
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	5 cut(s)	189, 235, 333, 550, 564
BstMWI	GCNNNNNNNGC	5 cut(s)	319, 475, 531, 540, 619
BstNSI	RCATGY	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	3 cut(s)	333, 550, 564
BstYI	RGATCY	3 cut(s)	333, 550, 564
BsuI	GTATCC	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	368, 613, 642
BtsIMutI	CAGTG	2 cut(s)	42, 632
Cac8I	GCNNGC	2 cut(s)	516, 527
CciI	TCATGA	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	2 cut(s)	379, 560
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	3 cut(s)	159, 210, 246
DpnI	GATC	5 cut(s)	191, 237, 335, 552, 566
DpnII	GATC	5 cut(s)	189, 235, 333, 550, 564
DraIII	CACNNNGTG	1 cut(s)	638
EaeI	YGGCCR	1 cut(s)	611
Eam1104I	CTCTTC	4 cut(s)	47, 54, 422, 647
EarI	CTCTTC	4 cut(s)	47, 54, 422, 647
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	644
EcoRI	GAATTC	1 cut(s)	267
FaeI	CATG	2 cut(s)	382, 563
FaiI	YATR	9 cut(s)	231, 380, 402, 411, 448, 462, 561, 610, 666
FatI	CATG	2 cut(s)	378, 559
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	368, 613, 642
HapII	CCGG	2 cut(s)	193, 684
Hin1II	CATG	2 cut(s)	382, 563
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	1 cut(s)	32
HpaI	GTTAAC	1 cut(s)	361
HpaII	CCGG	2 cut(s)	193, 684
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	126, 160
Hpy188III	TCNNGA	5 cut(s)	29, 239, 352, 560, 568
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	619, 665
HpyCH4III	ACNGT	2 cut(s)	574, 692
HpyCH4V	TGCA	3 cut(s)	284, 313, 543
HpyF10VI	GCNNNNNNNGC	5 cut(s)	319, 475, 531, 540, 619
HpyF3I	CTNAG	3 cut(s)	159, 210, 246
Hsp92II	CATG	2 cut(s)	382, 563
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	5 cut(s)	189, 235, 333, 550, 564
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	670
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	5 cut(s)	191, 237, 335, 552, 566
MboI	GATC	5 cut(s)	189, 235, 333, 550, 564
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	3 cut(s)	333, 550, 564
MlsI	TGGCCA	1 cut(s)	613
MluCI	AATT	5 cut(s)	132, 267, 285, 697, 727
MluNI	TGGCCA	1 cut(s)	613
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	556
Mox20I	TGGCCA	1 cut(s)	613
MscI	TGGCCA	1 cut(s)	613
MseI	TTAA	5 cut(s)	339, 360, 471, 588, 645
Msp20I	TGGCCA	1 cut(s)	613
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	2 cut(s)	193, 684
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	118
MwoI	GCNNNNNNNGC	5 cut(s)	319, 475, 531, 540, 619
NdeII	GATC	5 cut(s)	189, 235, 333, 550, 564
NlaIII	CATG	2 cut(s)	382, 563
NlaIV	GGNNCC	3 cut(s)	27, 630, 659
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	265
PagI	TCATGA	1 cut(s)	559
PctI	GAATGC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	638
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PspN4I	GGNNCC	3 cut(s)	27, 630, 659
PspPI	GGNCC	1 cut(s)	578
PsuI	RGATCY	3 cut(s)	333, 550, 564
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	5 cut(s)	339, 360, 471, 588, 645
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	5 cut(s)	189, 235, 333, 550, 564
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	1 cut(s)	41
SfaNI	GCATC	1 cut(s)	670
SfuI	TTCGAA	1 cut(s)	265
SinI	GGWCC	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	5 cut(s)	132, 267, 285, 697, 727
SspI	AATATT	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	574, 692
TaqI	TCGA	2 cut(s)	265, 510
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	5 cut(s)	132, 267, 285, 697, 727
TatI	WGTACW	1 cut(s)	165
Tru1I	TTAA	5 cut(s)	339, 360, 471, 588, 645
Tru9I	TTAA	5 cut(s)	339, 360, 471, 588, 645
TscAI	CASTG	2 cut(s)	42, 639
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	2 cut(s)	247, 548
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	2 cut(s)	42, 639
Van91I	CCANNNNNTGG	1 cut(s)	638
Vha464I	CTTAAG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	267
XceI	RCATGY	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.