AT2G15000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001279
Physical Location & Seq
Reverse (-)
6480817 .. 6482425
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15000.3

Sequence Viewer

Length: 282 bp
ATGGCTTGGCGCAACGCAGGATCTGCCGCTCGTTCTTTCGTCTCCGCCACCGCAAGATCACCATCTCTCCGTTCTCCCACCACGGCGCTTCCTCGCCTCCGTCCTCCTCAATCCTCCTTACCTAGCCGTCGCTTCACCTTCTCATCACCTTCCAGGAATCTAGGAGCACTTGGTTGCACACAGTCGTTCTTGCCTCTGTACAGTGTTGTGGCTACTTCTCAACTCACATCTCACCTTAACGTTAACTTGCGAGCTTTCTGCGAGCTGTCTAACGGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

9.98

Weight (kDa)

12.0

Isoelectric Point (pI)

92.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 29
AciI CCGC 3 cut(s) 27, 45, 51
AclI AACGTT 1 cut(s) 240
AclWI GGATC 1 cut(s) 28
AfaI GTAC 2 cut(s) 200, 277
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 2 cut(s) 254, 265
AluI AGCT 2 cut(s) 254, 265
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 23
AspLEI GCGC 2 cut(s) 12, 88
AsuHPI GGTGA 4 cut(s) 51, 127, 138, 224
Bbv12I GWGCWC 1 cut(s) 169
BccI CCATC 1 cut(s) 70
BceAI ACGGC 2 cut(s) 99, 111
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BciT130I CCWGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 2 cut(s) 123, 161
BfoI RGCGCY 1 cut(s) 89
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse8I GATNNNNATC 1 cut(s) 61
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 169
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 2 cut(s) 20, 56
BspACI CCGC 3 cut(s) 27, 45, 51
BspPI GGATC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 20, 56
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 3 cut(s) 183, 203, 275
BstAPI GCANNNNNTGC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 252, 263
BstDSI CCRYGG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 2 cut(s) 12, 88
BstKTI GATC 2 cut(s) 23, 59
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 2 cut(s) 20, 56
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 252, 263
CaiI CAGNNNCTG 1 cut(s) 23
CfoI GCGC 2 cut(s) 12, 88
Csp6I GTAC 2 cut(s) 199, 276
CviJI RGCY 5 cut(s) 5, 126, 212, 254, 265
CviKI_1 RGCY 5 cut(s) 5, 126, 212, 254, 265
CviQI GTAC 2 cut(s) 199, 276
DpnI GATC 2 cut(s) 22, 58
DpnII GATC 2 cut(s) 20, 56
EciI GGCGGA 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 2 cut(s) 123, 161
GlaI GCGC 2 cut(s) 11, 87
GluI GCNGC 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 89
HhaI GCGC 2 cut(s) 12, 88
Hin6I GCGC 2 cut(s) 10, 86
HinP1I GCGC 2 cut(s) 10, 86
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 157
HpaI GTTAAC 1 cut(s) 244
HphI GGTGA 4 cut(s) 51, 127, 138, 224
Hpy166II GTNNAC 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 2 cut(s) 148, 159
HpyCH4III ACNGT 3 cut(s) 183, 203, 275
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 240
HspAI GCGC 2 cut(s) 10, 86
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 20, 56
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 3 cut(s) 3, 139, 166
MaeI CTAG 2 cut(s) 123, 161
MaeII ACGT 1 cut(s) 240
MalI GATC 2 cut(s) 22, 58
MbiI CCGCTC 1 cut(s) 29
MboI GATC 2 cut(s) 20, 56
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 169
MnlI CCTC 6 cut(s) 102, 107, 114, 117, 124, 204
MseI TTAA 2 cut(s) 237, 243
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 2 cut(s) 20, 56
PfeI GAWTC 1 cut(s) 157
PfoI TCCNGGA 1 cut(s) 152
PkrI GCNGC 1 cut(s) 28
Psp1406I AACGTT 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 2 cut(s) 200, 277
RsaNI GTAC 2 cut(s) 199, 276
SaqAI TTAA 2 cut(s) 237, 243
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 2 cut(s) 20, 56
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 1 cut(s) 169
SetI ASST 7 cut(s) 124, 140, 151, 237, 243, 256, 267
SsiI CCGC 3 cut(s) 27, 45, 51
SspMI CTAG 2 cut(s) 123, 161
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 3 cut(s) 183, 203, 275
TaiI ACGT 1 cut(s) 243
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 2 cut(s) 237, 243
Tru9I TTAA 2 cut(s) 237, 243
TscAI CASTG 1 cut(s) 208
TspGWI ACGGA 2 cut(s) 59, 89
TspRI CASTG 1 cut(s) 208
XspI CTAG 2 cut(s) 123, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.