Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001279

Physical Location & Seq

Genomic Coordinates Reverse (-)

6183955 .. 6186487

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG062500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCTAGTCCGCATCAGCTATCATACACCCGCGCCACACCATTACCCCAGTTACAAGTCAAAACCTACAAAACCCTCACAAAGCCCTTGGCTTTAGCCCTCACAAAGCCCTTGGCTTTAGCCACAAACACTGAAAAGAGGAAAATGGCTTTGCGCTCTGCTGGTTCGCTCTCTCGGTCCTTGGCCTCCACCGCTAGGGTTTCGCTCCACCGCTCCGCCCCTACTCTCCGGCGCCTCCGCCCGCCGACCTCTCCGGCCACTCGCCGCTTCTCCTTCACCTCTCCCAGGTCACCATTTCAATCTTCTCCTTTCTTAAATCGCCGATTGCAAATGAGTGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.66

Weight (kDa)

12.0

Isoelectric Point (pI)

98.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265
fragaria_vesca	FvH4_1g16960 FvH4_1g16960 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800
malus_domestica	MD02G1179900.v1.1 MD10G1099700.v1.1
prunus_persica	Prupe.6G226300_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1
pyrus_communis	pycom02g14580 pycom05g09150 pycom10g08580
rosa_chinensis	RchiOBHm_Chr2g0107061 RchiOBHm_Chr6g0254531
rosa_multiflora	Rmu_sc0002116.1_g000003 Rmu_sc0004298.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136650 Rroxscaffold_7G00210700
rosa_rugosa	Rorug02G0140100 Rorug02G0140100 Rorug05G0553000 Rorug05G0553100 Rorug05G0553200
rosa_samantha	Rh2AG190900 Rh2BG202600 Rh2CG195800 Rh2DG198100 Rh6AG070100 Rh6BG062600 Rh6CG062500 Rh6DG059500
rosa_wichuraiana	Rw2G015060 Rw6G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	231
AccBSI	CCGCTC	1 cut(s)	213
AccII	CGCG	1 cut(s)	33
AciI	CCGC	8 cut(s)	11, 31, 192, 211, 216, 238, 242, 265
AcoI	YGGCCR	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	232
AfiI	CCNNNNNNNGG	2 cut(s)	195, 285
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
AoxI	GGCC	2 cut(s)	183, 255
AspLEI	GCGC	3 cut(s)	35, 156, 234
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	268, 282
AvaII	GGWCC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	286
BfaI	CTAG	2 cut(s)	6, 195
BfoI	RGCGCY	1 cut(s)	235
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	286
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	22
BmuI	ACTGGG	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	232
BsaJI	CCNNGG	4 cut(s)	87, 111, 180, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 285
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	4 cut(s)	87, 111, 180, 284
BseLI	CCNNNNNNNGG	2 cut(s)	195, 285
BseNI	ACTGG	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	185, 257
BshNI	GGYRCC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	229, 254
BslI	CCNNNNNNNGG	2 cut(s)	195, 285
BsnI	GGCC	2 cut(s)	185, 257
BspACI	CCGC	8 cut(s)	11, 31, 192, 211, 216, 238, 242, 265
BspANI	GGCC	2 cut(s)	185, 257
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	231
BsrBI	CCGCTC	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	4 cut(s)	87, 111, 180, 284
BssNI	GRCGYC	1 cut(s)	232
BssT1I	CCWWGG	3 cut(s)	87, 111, 180
Bst2UI	CCWGG	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	242
BstEII	GGTNACC	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	3 cut(s)	35, 156, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	286
BstPI	GGTNACC	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	185, 257
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	3 cut(s)	35, 156, 234
Cfr13I	GGNCC	1 cut(s)	177
DinI	GGCGCC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	255
EciI	GGCGGA	2 cut(s)	205, 227
Eco130I	CCWWGG	3 cut(s)	87, 111, 180
Eco47I	GGWCC	1 cut(s)	177
Eco91I	GGTNACC	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	3 cut(s)	87, 111, 180
EgeI	GGCGCC	1 cut(s)	233
EheI	GGCGCC	1 cut(s)	233
ErhI	CCWWGG	3 cut(s)	87, 111, 180
FaiI	YATR	1 cut(s)	25
FauI	CCCGC	2 cut(s)	38, 249
Fnu4HI	GCNGC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	2 cut(s)	6, 195
GlaI	GCGC	3 cut(s)	34, 155, 233
GluI	GCNGC	1 cut(s)	265
HaeII	RGCGCY	1 cut(s)	235
HaeIII	GGCC	2 cut(s)	185, 257
HapII	CCGG	2 cut(s)	229, 254
HhaI	GCGC	3 cut(s)	35, 156, 234
Hin1I	GRCGYC	1 cut(s)	232
Hin6I	GCGC	3 cut(s)	33, 154, 232
HinP1I	GCGC	3 cut(s)	33, 154, 232
HpaII	CCGG	2 cut(s)	229, 254
HphI	GGTGA	2 cut(s)	268, 282
HpyAV	CCTTC	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	232
HspAI	GCGC	3 cut(s)	33, 154, 232
KasI	GGCGCC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	210, 218
LpnPI	CCDG	6 cut(s)	62, 147, 242, 267, 271, 298
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	2 cut(s)	6, 195
MaeIII	GTNAC	2 cut(s)	51, 288
MbiI	CCGCTC	1 cut(s)	213
MboII	GAAGA	1 cut(s)	294
Mly113I	GGCGCC	1 cut(s)	232
MnlI	CCTC	7 cut(s)	86, 110, 132, 196, 245, 259, 289
MseI	TTAA	1 cut(s)	314
MspI	CCGG	2 cut(s)	229, 254
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	191
NarI	GGCGCC	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	266
PluTI	GGCGCC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	286
SetI	ASST	5 cut(s)	21, 68, 251, 281, 290
SfaNI	GCATC	1 cut(s)	22
SfoI	GGCGCC	1 cut(s)	233
SinI	GGWCC	1 cut(s)	177
SsiI	CCGC	8 cut(s)	11, 31, 192, 211, 216, 238, 242, 265
SspDI	GGCGCC	1 cut(s)	231
SspMI	CTAG	2 cut(s)	6, 195
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	3 cut(s)	87, 111, 180
TaqII	GACCGA	1 cut(s)	165
TauI	GCSGC	1 cut(s)	267
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	288
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	177
XagI	CCTNNNNNAGG	1 cut(s)	283
XspI	CTAG	2 cut(s)	6, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.