Rorug05G0553200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001279
Physical Location & Seq
Reverse (-)
74112370 .. 74113602
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0553200.1

Sequence Viewer

Length: 1233 bp
ATGGAGGAGGAGGAGGAGCTGAACTTTGACCTCCCTGAACATATAATTCTGCAGATTCTGTGTAGGTTGCCAGTCAAGTCTTTGATTCGATTCAGTTGTGTATCGAAAAGGTGGCGTAGTATCATAATTTCTGACCCACAATTTAGAAAAGCCCACCTCAAACTAGCATCTGAGCAGCGAAGCATTACTAAGAGACTCATTCTCTCCGTATCCCCTTCTGTTTCCATTAGAGATCATCAATCACAAACCAGAGTTGATCAACCCCTTCGAATTCAATCCTTAGAAAGTTTATTTGGAGATAATTCTTCGGTCACAAATCTCACCTTCCCATCCGAGGAGCATTGCAGAATTAATATACTGGGTTCGTGCAACGGGTTGGTAGTTCTAGGTAATTCTTACAAAGAATGGTCCATTTGGAACCCATCAACTAGGTTCTTCCGCAAAATTCCTGCTCCAGACTTTTCATCAGTAACGAAAAAGTCTAGAATATTTGAACCAGATACGTATGGTTTTGGTTATGTCTCATCCACTGATGACTACAAACTTGTTTTTGTAGTCCACATTGGTGGTTCTCATTACGCTGTTTCTGCACCGGATGTTAAGATCTTCATATTCTCAGTGAGAGCTAACTGTTGGAAAATTAGTGAAGTTTCTCGCTGGCCATTCCTCAAGTACAAACCGACTAGTGACTGTGGAACTCTTTCAAATGAAGCGATCCATTGGGTTAACCAATACTATGTCTATCTACAAGACTACATTGAAGCAATTGATGTCTGTGCTTTTGATTTGGAAAATGAGGAGTTCCGTAAAGTGCCTATTCCTTGTTTTAAGCAAGATGATGATCGAAATTGCGATAGAAGAATGCGGACTGTTGTTCATTCAGGAGGATGCCTTTGCGTTTCGTCTCAGACTATTCATGATAGGAGTGGGGATATTGAATTGTGGATGATGAGAGATTACGGGGTGTCCAATTCATGGGCGAAACTCTACAAATTTAGCAAGTATGATTTACCGGTTCCGCTTACAGGATATTATGGTTGGGATCTAAGTTTGGTTACAGAAAGTAGTGGTTCAATTGTGATCAATTTTGAGAACAAGGAGTTGCTCAGGATTGAATGCCATAAAGAAGAGAAGCCGGTCTGTGTCGGCCGTTATAGGCTTGAGGAGGTGTCTGAGTGTAACTTTTTTAACGCGACTGTATATGATGAAACTCTAATTTCAGCACCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

410

Amino Acids

47.36

Weight (kDa)

5.99

Isoelectric Point (pI)

59.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 46 2.9e-12 F-box domain
F-box-like PF12937 10 - 45 1.9e-09 F-box-like
FBA_3 PF08268 102 - 328 2.2e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 975
AccII CGCG 1 cut(s) 1193
AciI CCGC 3 cut(s) 439, 865, 1019
AclWI GGATC 2 cut(s) 709, 1050
AcoI YGGCCR 2 cut(s) 659, 1147
AcsI RAATTY 3 cut(s) 270, 444, 992
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 3 cut(s) 334, 975, 1025
AgeI ACCGGT 1 cut(s) 1012
AgsI TTSAA 7 cut(s) 275, 494, 705, 761, 938, 1074, 1115
AhlI ACTAGT 1 cut(s) 683
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AleI CACNNNNGTG 1 cut(s) 564
AluBI AGCT 2 cut(s) 19, 626
AluI AGCT 2 cut(s) 19, 626
Alw26I GTCTC 3 cut(s) 187, 526, 909
AlwI GGATC 2 cut(s) 709, 1050
AlwNI CAGNNNCTG 1 cut(s) 58
AoxI GGCC 2 cut(s) 659, 1147
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 3 cut(s) 270, 444, 992
AseI ATTAAT 1 cut(s) 351
AsiGI ACCGGT 1 cut(s) 1012
Asp700I GAANNNNTTC 1 cut(s) 700
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 1 cut(s) 313
AsuII TTCGAA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 408
BalI TGGCCA 1 cut(s) 661
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 337, 430
BceAI ACGGC 1 cut(s) 1134
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 2 cut(s) 256, 1080
BcoDI GTCTC 3 cut(s) 187, 526, 909
BcuI ACTAGT 1 cut(s) 683
BfaI CTAG 5 cut(s) 164, 386, 429, 483, 684
BfmI CTRYAG 1 cut(s) 50
BfuI GTATCC 1 cut(s) 220
BglII AGATCT 1 cut(s) 603
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 2 cut(s) 419, 1017
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 176, 878
BmuI ACTGGG 1 cut(s) 368
BpmI CTGGAG 1 cut(s) 438
Bpu10I CCTNAGC 1 cut(s) 1106
Bpu14I TTCGAA 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 653, 1181
BsaAI YACGTR 1 cut(s) 504
BsaBI GATNNNNATC 1 cut(s) 840
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 2 cut(s) 592, 1012
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 975, 1025
Bse118I RCCGGY 2 cut(s) 1012, 1135
Bse1I ACTGG 2 cut(s) 71, 363
Bse3DI GCAATG 1 cut(s) 340
Bse8I GATNNNNATC 1 cut(s) 840
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 5 cut(s) 329, 524, 601, 893, 951
BseJI GATNNNNATC 1 cut(s) 840
BseLI CCNNNNNNNGG 3 cut(s) 334, 975, 1025
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 5 cut(s) 162, 630, 920, 1120, 1164
BseNI ACTGG 2 cut(s) 71, 363
BseRI GAGGAG 7 cut(s) 20, 23, 26, 29, 350, 812, 1178
BseX3I CGGCCG 1 cut(s) 1147
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 1193
Bsh1285I CGRYCG 1 cut(s) 1150
BshFI GGCC 2 cut(s) 661, 1149
BshTI ACCGGT 1 cut(s) 1012
BsiEI CGRYCG 1 cut(s) 1150
BsiSI CCGG 3 cut(s) 593, 1013, 1136
BslI CCNNNNNNNGG 3 cut(s) 334, 975, 1025
BsmAI GTCTC 3 cut(s) 187, 526, 909
BsmBI CGTCTC 1 cut(s) 909
BsmI GAATGC 2 cut(s) 867, 1121
BsnI GGCC 2 cut(s) 661, 1149
Bsp119I TTCGAA 1 cut(s) 268
Bsp143I GATC 7 cut(s) 232, 256, 603, 714, 841, 1042, 1080
BspACI CCGC 3 cut(s) 439, 865, 1019
BspANI GGCC 2 cut(s) 661, 1149
BspCNI CTCAG 5 cut(s) 163, 629, 919, 1119, 1165
BspFNI CGCG 1 cut(s) 1193
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 2 cut(s) 419, 1017
BspMAI CTGCAG 1 cut(s) 54
BspPI GGATC 2 cut(s) 709, 1050
BspT104I TTCGAA 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 340
BsrFI RCCGGY 2 cut(s) 1012, 1135
BsrI ACTGG 2 cut(s) 71, 363
BssAI RCCGGY 2 cut(s) 1012, 1135
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 7 cut(s) 232, 256, 603, 714, 841, 1042, 1080
Bst4CI ACNGT 4 cut(s) 632, 692, 871, 1198
Bst6I CTCTTC 1 cut(s) 1122
BstBAI YACGTR 1 cut(s) 504
BstBI TTCGAA 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 659
BstDEI CTNAG 8 cut(s) 171, 189, 280, 616, 906, 1046, 1106, 1173
BstF5I GGATG 5 cut(s) 329, 524, 601, 893, 951
BstFNI CGCG 1 cut(s) 1193
BstKTI GATC 7 cut(s) 235, 259, 606, 717, 844, 1045, 1083
BstMAI GTCTC 3 cut(s) 187, 526, 909
BstMBI GATC 7 cut(s) 232, 256, 603, 714, 841, 1042, 1080
BstMCI CGRYCG 1 cut(s) 1150
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstSFI CTRYAG 1 cut(s) 50
BstSNI TACGTA 1 cut(s) 504
BstUI CGCG 1 cut(s) 1193
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 603, 1042
BstXI CCANNNNNNTGG 1 cut(s) 566
BstYI RGATCY 2 cut(s) 603, 1042
BstZI CGGCCG 1 cut(s) 1147
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 661, 1149
BtsCI GGATG 5 cut(s) 329, 524, 601, 893, 951
BtsIMutI CAGTG 2 cut(s) 528, 624
Cac8I GCNNGC 1 cut(s) 659
CaiI CAGNNNCTG 1 cut(s) 58
CciI TCATGA 1 cut(s) 916
Cfr10I RCCGGY 2 cut(s) 1012, 1135
Cfr13I GGNCC 1 cut(s) 408
Csp6I GTAC 1 cut(s) 673
CspAI ACCGGT 1 cut(s) 1012
CviAII CATG 2 cut(s) 917, 975
CviJI RGCY 7 cut(s) 19, 152, 626, 661, 1135, 1149, 1159
CviKI_1 RGCY 7 cut(s) 19, 152, 626, 661, 1135, 1149, 1159
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 8 cut(s) 171, 189, 280, 616, 906, 1046, 1106, 1173
DpnI GATC 7 cut(s) 234, 258, 605, 716, 843, 1044, 1082
DpnII GATC 7 cut(s) 232, 256, 603, 714, 841, 1042, 1080
EaeI YGGCCR 2 cut(s) 659, 1147
EagI CGGCCG 1 cut(s) 1147
Eam1104I CTCTTC 1 cut(s) 1122
EarI CTCTTC 1 cut(s) 1122
EclXI CGGCCG 1 cut(s) 1147
Eco105I TACGTA 1 cut(s) 504
Eco47I GGWCC 1 cut(s) 408
Eco52I CGGCCG 1 cut(s) 1147
EcoRI GAATTC 1 cut(s) 270
Esp3I CGTCTC 1 cut(s) 909
FaeI CATG 2 cut(s) 920, 978
FatI CATG 2 cut(s) 916, 974
FbaI TGATCA 2 cut(s) 256, 1080
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 5 cut(s) 316, 511, 608, 900, 958
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 5 cut(s) 164, 386, 429, 483, 684
GluI GCNGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 2 cut(s) 661, 1149
HapII CCGG 3 cut(s) 593, 1013, 1136
Hin1II CATG 2 cut(s) 920, 978
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HinfI GANTC 4 cut(s) 55, 85, 90, 195
HpaI GTTAAC 1 cut(s) 727
HpaII CCGG 3 cut(s) 593, 1013, 1136
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 2 cut(s) 559, 727
Hpy188I TCNGA 5 cut(s) 133, 172, 334, 909, 1174
Hpy188III TCNNGA 5 cut(s) 455, 483, 882, 917, 1108
Hpy8I GTNNAC 2 cut(s) 559, 727
HpyAV CCTTC 3 cut(s) 225, 275, 334
HpyCH4III ACNGT 4 cut(s) 632, 692, 871, 1198
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 4 cut(s) 52, 345, 369, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 8 cut(s) 171, 189, 280, 616, 906, 1046, 1106, 1173
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 2 cut(s) 920, 978
Ksp22I TGATCA 2 cut(s) 256, 1080
KspAI GTTAAC 1 cut(s) 727
Kzo9I GATC 7 cut(s) 232, 256, 603, 714, 841, 1042, 1080
LmnI GCTCC 3 cut(s) 16, 337, 457
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 2 cut(s) 176, 878
MaeI CTAG 5 cut(s) 164, 386, 429, 483, 684
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 5 cut(s) 310, 469, 686, 1054, 1178
MalI GATC 7 cut(s) 234, 258, 605, 716, 843, 1044, 1082
MboI GATC 7 cut(s) 232, 256, 603, 714, 841, 1042, 1080
MboII GAAGA 5 cut(s) 297, 427, 598, 870, 1139
MfeI CAATTG 2 cut(s) 765, 1074
MflI RGATCY 2 cut(s) 603, 1042
MlsI TGGCCA 1 cut(s) 661
MluNI TGGCCA 1 cut(s) 661
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 614
Mox20I TGGCCA 1 cut(s) 661
MroXI GAANNNNTTC 1 cut(s) 700
MscI TGGCCA 1 cut(s) 661
MseI TTAA 5 cut(s) 351, 600, 726, 828, 1188
MslI CAYNNNNRTG 2 cut(s) 564, 1228
Msp20I TGGCCA 1 cut(s) 661
MspI CCGG 3 cut(s) 593, 1013, 1136
MunI CAATTG 2 cut(s) 765, 1074
Mva1269I GAATGC 2 cut(s) 867, 1121
MvnI CGCG 1 cut(s) 1193
MwoI GCNNNNNNNGC 1 cut(s) 587
NdeII GATC 7 cut(s) 232, 256, 603, 714, 841, 1042, 1080
NlaIII CATG 2 cut(s) 920, 978
NlaIV GGNNCC 2 cut(s) 419, 1017
NmuCI GTSAC 2 cut(s) 310, 686
NspV TTCGAA 1 cut(s) 268
OliI CACNNNNGTG 1 cut(s) 564
PagI TCATGA 1 cut(s) 916
PctI GAATGC 2 cut(s) 867, 1121
PdmI GAANNNNTTC 1 cut(s) 700
PfeI GAWTC 3 cut(s) 55, 85, 90
PflMI CCANNNNNTGG 1 cut(s) 975
PinAI ACCGGT 1 cut(s) 1012
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
Ppu21I YACGTR 1 cut(s) 504
PshBI ATTAAT 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 419, 1017
PspPI GGNCC 1 cut(s) 408
PstI CTGCAG 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 2 cut(s) 603, 1042
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 2 cut(s) 564, 1228
SaqAI TTAA 5 cut(s) 351, 600, 726, 828, 1188
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 7 cut(s) 232, 256, 603, 714, 841, 1042, 1080
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 1 cut(s) 189
SfaNI GCATC 2 cut(s) 176, 878
SfcI CTRYAG 1 cut(s) 50
SfuI TTCGAA 1 cut(s) 268
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 564, 1228
SmlI CTYRAG 2 cut(s) 668, 1160
SmoI CTYRAG 2 cut(s) 668, 1160
SnaBI TACGTA 1 cut(s) 504
SpeI ACTAGT 1 cut(s) 683
SsiI CCGC 3 cut(s) 439, 865, 1019
SspI AATATT 1 cut(s) 489
SspMI CTAG 5 cut(s) 164, 386, 429, 483, 684
TaaI ACNGT 4 cut(s) 632, 692, 871, 1198
TaiI ACGT 1 cut(s) 506
TaqI TCGA 4 cut(s) 88, 104, 268, 844
TaqII GACCGA 1 cut(s) 298
TatI WGTACW 1 cut(s) 672
TfiI GAWTC 3 cut(s) 55, 85, 90
Tru1I TTAA 5 cut(s) 351, 600, 726, 828, 1188
Tru9I TTAA 5 cut(s) 351, 600, 726, 828, 1188
TscAI CASTG 2 cut(s) 535, 624
TseFI GTSAC 2 cut(s) 310, 686
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 2 cut(s) 310, 686
TspDTI ATGAA 7 cut(s) 453, 598, 723, 866, 905, 963, 1221
TspGWI ACGGA 2 cut(s) 196, 794
TspRI CASTG 2 cut(s) 535, 624
Van91I CCANNNNNTGG 1 cut(s) 975
VpaK11BI GGWCC 1 cut(s) 408
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 3 cut(s) 270, 444, 992
XbaI TCTAGA 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 700
XspI CTAG 5 cut(s) 164, 386, 429, 483, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.