Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001279

Physical Location & Seq

Genomic Coordinates Reverse (-)

10064290 .. 10066400

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG070100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTTTGCGCTCTGCTGGTTCGCTCTCTCGGTCCTTGGCCTCCACCGCTAGGGTTTCGCTCCACCGCTCCGCCCCAACTCTCCGGCGCCTACGCCCGCCGACCGCTCCGGCCACTCGCCGCTTCTCCTTCACCTCTCCCAGGAACTTGGGAGAACTGGGATGCACACAGTCGCTGCTGCATATGCGAGCTGCAACATGCCTCACATCTCACCTGACTGTCAATGCACGTGCTTGTTGCGAGTTGTCCCACGGAATTGGGATTGGGATTGATAGGAAGGAATGGAAAAGATGGGTGATGCGCTTGGACTTACGATCATCCAAAAGGCAGGAGAATGATGCATCTTTGGACTTGAAAGGCTTTTTGATCAATATAGCACAGTTGAGTACAACTAGATATTGGGGTGATCGTAGAGATTGGATACTCACTCTATTCAGTAGCGAGCGCTCGTGGACTTGGAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.63

Weight (kDa)

11.4

Isoelectric Point (pI)

66.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265
fragaria_vesca	FvH4_1g16960 FvH4_1g16960 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800
malus_domestica	MD02G1179900.v1.1 MD10G1099700.v1.1
prunus_persica	Prupe.6G226300_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1
pyrus_communis	pycom02g14580 pycom05g09150 pycom10g08580
rosa_chinensis	RchiOBHm_Chr2g0107061 RchiOBHm_Chr6g0254531
rosa_multiflora	Rmu_sc0002116.1_g000003 Rmu_sc0004298.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136650 Rroxscaffold_7G00210700
rosa_rugosa	Rorug02G0140100 Rorug02G0140100 Rorug05G0553000 Rorug05G0553100 Rorug05G0553200
rosa_samantha	Rh2AG190900 Rh2BG202600 Rh2CG195800 Rh2DG198100 Rh6AG070100 Rh6BG062600 Rh6CG062500 Rh6DG059500
rosa_wichuraiana	Rw2G015060 Rw6G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AccBSI	CCGCTC	2 cut(s)	69, 107
AciI	CCGC	6 cut(s)	48, 67, 72, 98, 105, 121
AcoI	YGGCCR	1 cut(s)	111
AcvI	CACGTG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	388
AfeI	AGCGCT	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	51, 141
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	446
AoxI	GGCC	2 cut(s)	39, 111
ApeKI	GCWGC	3 cut(s)	175, 178, 191
AspLEI	GCGC	4 cut(s)	12, 90, 303, 447
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	4 cut(s)	124, 203, 307, 416
AvaII	GGWCC	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	87
BauI	CACGAG	1 cut(s)	448
BbrPI	CACGTG	1 cut(s)	230
BbvI	GCAGC	3 cut(s)	162, 165, 178
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	142
BciVI	GTATCC	1 cut(s)	414
BclI	TGATCA	1 cut(s)	366
BfaI	CTAG	2 cut(s)	51, 393
BfoI	RGCGCY	2 cut(s)	91, 448
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	4 cut(s)	121, 176, 179, 192
BlsI	GCNGC	4 cut(s)	122, 177, 180, 193
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	167
BmsI	GCATC	4 cut(s)	152, 288, 328, 350
BmuI	ACTGGG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	88
BsaJI	CCNNGG	3 cut(s)	36, 140, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 141
Bse1I	ACTGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	3 cut(s)	36, 140, 250
BseGI	GGATG	2 cut(s)	167, 317
BseLI	CCNNNNNNNGG	2 cut(s)	51, 141
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	162, 165, 178
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	41, 113
BshNI	GGYRCC	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	85, 110
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	51, 141
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	41, 113
Bsp143I	GATC	3 cut(s)	314, 366, 406
BspACI	CCGC	6 cut(s)	48, 67, 72, 98, 105, 121
BspANI	GGCC	2 cut(s)	41, 113
BspLI	GGNNCC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	87
BsrBI	CCGCTC	2 cut(s)	69, 107
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	3 cut(s)	36, 140, 250
BssMI	GATC	3 cut(s)	314, 366, 406
BssNI	GRCGYC	1 cut(s)	88
BssSI	CACGAG	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	3 cut(s)	171, 220, 381
BstACI	GRCGYC	1 cut(s)	88
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	98, 189, 443
BstDSI	CCRYGG	1 cut(s)	250
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	167, 317
BstH2I	RGCGCY	2 cut(s)	91, 448
BstHHI	GCGC	4 cut(s)	12, 90, 303, 447
BstKTI	GATC	3 cut(s)	317, 369, 409
BstMBI	GATC	3 cut(s)	314, 366, 406
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 184
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	162, 165, 178
BstXI	CCANNNNNNTGG	2 cut(s)	148, 257
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	41, 113
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	167, 317
Cac8I	GCNNGC	3 cut(s)	98, 189, 443
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	4 cut(s)	12, 90, 303, 447
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	5 cut(s)	5, 41, 113, 191, 360
CviKI_1	RGCY	5 cut(s)	5, 41, 113, 191, 360
CviQI	GTAC	1 cut(s)	387
DinI	GGCGCC	1 cut(s)	89
DpnI	GATC	3 cut(s)	316, 368, 408
DpnII	GATC	3 cut(s)	314, 366, 406
EaeI	YGGCCR	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	33
Eco47III	AGCGCT	1 cut(s)	446
Eco72I	CACGTG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	343
EgeI	GGCGCC	1 cut(s)	89
EheI	GGCGCC	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	201
FaiI	YATR	4 cut(s)	183, 185, 199, 374
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	197
FauI	CCCGC	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	366
Fnu4HI	GCNGC	4 cut(s)	121, 176, 179, 192
FokI	GGATG	2 cut(s)	174, 304
Fsp4HI	GCNGC	4 cut(s)	121, 176, 179, 192
FspBI	CTAG	2 cut(s)	51, 393
GlaI	GCGC	4 cut(s)	11, 89, 302, 446
GluI	GCNGC	4 cut(s)	121, 176, 179, 192
HaeII	RGCGCY	2 cut(s)	91, 448
HaeIII	GGCC	2 cut(s)	41, 113
HapII	CCGG	2 cut(s)	85, 110
HhaI	GCGC	4 cut(s)	12, 90, 303, 447
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	201
Hin6I	GCGC	4 cut(s)	10, 88, 301, 445
HinP1I	GCGC	4 cut(s)	10, 88, 301, 445
HpaII	CCGG	2 cut(s)	85, 110
HphI	GGTGA	4 cut(s)	124, 203, 307, 416
Hpy166II	GTNNAC	1 cut(s)	453
Hpy8I	GTNNAC	1 cut(s)	453
HpyAV	CCTTC	2 cut(s)	139, 271
HpyCH4III	ACNGT	3 cut(s)	171, 220, 381
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	5 cut(s)	165, 181, 194, 227, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 184
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	201
HspAI	GCGC	4 cut(s)	10, 88, 301, 445
KasI	GGCGCC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	3 cut(s)	314, 366, 406
LmnI	GCTCC	3 cut(s)	66, 74, 112
LpnPI	CCDG	8 cut(s)	3, 98, 123, 127, 143, 154, 227, 314
Lsp1109I	GCAGC	3 cut(s)	162, 165, 178
LweI	GCATC	4 cut(s)	152, 288, 328, 350
MaeI	CTAG	2 cut(s)	51, 393
MaeII	ACGT	1 cut(s)	229
MalI	GATC	3 cut(s)	316, 368, 408
MbiI	CCGCTC	2 cut(s)	69, 107
MboI	GATC	3 cut(s)	314, 366, 406
MluCI	AATT	1 cut(s)	255
Mly113I	GGCGCC	1 cut(s)	88
MnlI	CCTC	3 cut(s)	52, 145, 212
Mph1103I	ATGCAT	1 cut(s)	343
MspI	CCGG	2 cut(s)	85, 110
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	47, 184
NarI	GGCGCC	1 cut(s)	88
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	3 cut(s)	314, 366, 406
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	1 cut(s)	201
PkrI	GCNGC	4 cut(s)	122, 177, 180, 193
PluTI	GGCGCC	1 cut(s)	91
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	140
PspCI	CACGTG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SatI	GCNGC	4 cut(s)	121, 176, 179, 192
Sau3AI	GATC	3 cut(s)	314, 366, 406
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	142
SetI	ASST	4 cut(s)	137, 193, 216, 232
SfaNI	GCATC	4 cut(s)	152, 288, 328, 350
SfoI	GGCGCC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	33
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	6 cut(s)	48, 67, 72, 98, 105, 121
SspDI	GGCGCC	1 cut(s)	87
SspMI	CTAG	2 cut(s)	51, 393
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	3 cut(s)	171, 220, 381
TaiI	ACGT	1 cut(s)	232
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	255
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	123
TseI	GCWGC	3 cut(s)	175, 178, 191
TspGWI	ACGGA	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	33
XagI	CCTNNNNNAGG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	201
XspI	CTAG	2 cut(s)	51, 393
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.