Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001279

Physical Location & Seq

Genomic Coordinates Forward (+)

18674678 .. 18676181

Gene Structure 1504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG195800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAACCGAACTGGCCCAATGATTTTGTAAACTGGCCCAATTACTCAAATTCCAAAAACCCTAAATTAAACCCCTTTGGTTTCCCATTTCCCAAATCCCAAACTCCAACCATGGCTTGGCGCGGTGGATCGTCCCTGTCGAGATCTCTGATCTCCGCCGCAAGAACCTCCACCGTCCGATCACCTCCGTCGATCTCATCCCTCCCTCGCTCTCCTCCGCTCCGTAATATGGCCTCCGCCACTCGCCGGACTCTCTTCTCTCTCCCCGCCAATGTGGGACAGCTGGCCTGCGCTCAGTCGCTGCTGCCGTTCCACAGCGCCGTCGCCTCCGTTCGTATGACCAGTCACATCTCCGGCGAAGTGCGCGCTTTCTGCGAGTTGTCTCAGGGTACCTCCATTGATCCCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.75

Weight (kDa)

11.45

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265
fragaria_vesca	FvH4_1g16960 FvH4_1g16960 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800
malus_domestica	MD02G1179900.v1.1 MD10G1099700.v1.1
prunus_persica	Prupe.6G226300_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1
pyrus_communis	pycom02g14580 pycom05g09150 pycom10g08580
rosa_chinensis	RchiOBHm_Chr2g0107061 RchiOBHm_Chr6g0254531
rosa_multiflora	Rmu_sc0002116.1_g000003 Rmu_sc0004298.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136650 Rroxscaffold_7G00210700
rosa_rugosa	Rorug02G0140100 Rorug02G0140100 Rorug05G0553000 Rorug05G0553100 Rorug05G0553200
rosa_samantha	Rh2AG190900 Rh2BG202600 Rh2CG195800 Rh2DG198100 Rh6AG070100 Rh6BG062600 Rh6CG062500 Rh6DG059500
rosa_wichuraiana	Rw2G015060 Rw6G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccBSI	CCGCTC	1 cut(s)	220
AccII	CGCG	2 cut(s)	123, 366
AciI	CCGC	6 cut(s)	123, 156, 159, 218, 237, 267
AclWI	GGATC	2 cut(s)	136, 395
AcsI	RAATTY	1 cut(s)	49
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	3 cut(s)	117, 229, 246
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	2 cut(s)	136, 395
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	4 cut(s)	14, 35, 231, 285
ApeKI	GCWGC	2 cut(s)	301, 304
ApoI	RAATTY	1 cut(s)	49
Asp718I	GGTACC	1 cut(s)	389
AspLEI	GCGC	5 cut(s)	123, 293, 320, 366, 368
AspS9I	GGNCC	2 cut(s)	15, 36
AsuHPI	GGTGA	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	389
BbvI	GCAGC	2 cut(s)	288, 291
BceAI	ACGGC	2 cut(s)	292, 305
BcoDI	GTCTC	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	321
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	3 cut(s)	159, 302, 305
BlsI	GCNGC	3 cut(s)	160, 303, 306
BmgT120I	GGNCC	2 cut(s)	15, 36
BmiI	GGNNCC	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 229, 246
Bse1I	ACTGG	3 cut(s)	17, 38, 342
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	3 cut(s)	117, 229, 246
BseMII	CTCAG	2 cut(s)	308, 398
BseNI	ACTGG	3 cut(s)	17, 38, 342
BsePI	GCGCGC	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	288, 291
Bsh1236I	CGCG	2 cut(s)	123, 366
BshFI	GGCC	4 cut(s)	16, 37, 233, 287
BshNI	GGYRCC	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	247, 354
BslFI	GGGAC	2 cut(s)	118, 291
BslI	CCNNNNNNNGG	3 cut(s)	117, 229, 246
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	118, 291
BsnI	GGCC	4 cut(s)	16, 37, 233, 287
Bsp143I	GATC	6 cut(s)	128, 143, 150, 179, 192, 400
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	6 cut(s)	123, 156, 159, 218, 237, 267
BspANI	GGCC	4 cut(s)	16, 37, 233, 287
BspCNI	CTCAG	2 cut(s)	307, 397
BspFNI	CGCG	2 cut(s)	123, 366
BspLI	GGNNCC	1 cut(s)	391
BspPI	GGATC	2 cut(s)	136, 395
BspT107I	GGYRCC	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	220
BsrI	ACTGG	3 cut(s)	17, 38, 342
BssECI	CCNNGG	1 cut(s)	111
BssHII	GCGCGC	1 cut(s)	364
BssMI	GATC	6 cut(s)	128, 143, 150, 179, 192, 400
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	285, 289, 366
BstDEI	CTNAG	2 cut(s)	294, 384
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	197
BstFNI	CGCG	2 cut(s)	123, 366
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	5 cut(s)	123, 293, 320, 366, 368
BstKTI	GATC	6 cut(s)	131, 146, 153, 182, 195, 403
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	6 cut(s)	128, 143, 150, 179, 192, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 372
BstUI	CGCG	2 cut(s)	123, 366
BstV1I	GCAGC	2 cut(s)	288, 291
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	4 cut(s)	16, 37, 233, 287
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	285, 289, 366
CaiI	CAGNNNCTG	1 cut(s)	301
CfoI	GCGC	5 cut(s)	123, 293, 320, 366, 368
Cfr13I	GGNCC	2 cut(s)	15, 36
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	6 cut(s)	16, 37, 116, 233, 283, 287
CviKI_1	RGCY	6 cut(s)	16, 37, 116, 233, 283, 287
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	294, 384
DpnI	GATC	6 cut(s)	130, 145, 152, 181, 194, 402
DpnII	GATC	6 cut(s)	128, 143, 150, 179, 192, 400
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	2 cut(s)	145, 226
Eco130I	CCWWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	115
FaiI	YATR	3 cut(s)	113, 230, 338
FaqI	GGGAC	2 cut(s)	118, 291
FatI	CATG	1 cut(s)	111
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	159, 302, 305
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	159, 302, 305
GlaI	GCGC	5 cut(s)	122, 292, 319, 365, 367
GluI	GCNGC	3 cut(s)	159, 302, 305
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	4 cut(s)	16, 37, 233, 287
HapII	CCGG	2 cut(s)	247, 354
HhaI	GCGC	5 cut(s)	123, 293, 320, 366, 368
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	5 cut(s)	121, 291, 318, 364, 366
HinP1I	GCGC	5 cut(s)	121, 291, 318, 364, 366
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	2 cut(s)	247, 354
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	150, 179
Hpy188III	TCNNGA	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	2 cut(s)	193, 326
HpyCH4III	ACNGT	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 372
HpyF3I	CTNAG	2 cut(s)	294, 384
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	5 cut(s)	121, 291, 318, 364, 366
KpnI	GGTACC	1 cut(s)	393
Kzo9I	GATC	6 cut(s)	128, 143, 150, 179, 192, 400
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	8 cut(s)	19, 149, 260, 269, 301, 355, 367, 371
Lsp1109I	GCAGC	2 cut(s)	288, 291
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	6 cut(s)	130, 145, 152, 181, 194, 402
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	6 cut(s)	128, 143, 150, 179, 192, 400
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	3 cut(s)	40, 49, 65
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	8 cut(s)	178, 195, 212, 216, 225, 244, 337, 403
MseI	TTAA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	2 cut(s)	247, 354
MvnI	CGCG	2 cut(s)	123, 366
MwoI	GCNNNNNNNGC	2 cut(s)	363, 372
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	6 cut(s)	128, 143, 150, 179, 192, 400
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	344
PauI	GCGCGC	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 305
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	160, 303, 306
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	2 cut(s)	15, 36
PstNI	CAGNNNCTG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	143
PteI	GCGCGC	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	3 cut(s)	159, 302, 305
Sau3AI	GATC	6 cut(s)	128, 143, 150, 179, 192, 400
Sau96I	GGNCC	2 cut(s)	15, 36
SchI	GAGTC	1 cut(s)	244
SetI	ASST	4 cut(s)	170, 187, 285, 395
Sse9I	AATT	3 cut(s)	40, 49, 65
SsiI	CCGC	6 cut(s)	123, 156, 159, 218, 237, 267
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	140, 191
TasI	AATT	3 cut(s)	40, 49, 65
TauI	GCSGC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	2 cut(s)	301, 304
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	177, 212, 319
Van91I	CCANNNNNTGG	1 cut(s)	117
XapI	RAATTY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.