FvH4_1g16960

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001279
Physical Location & Seq
Forward (+)
9808076 .. 9809418
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16960.t1

Sequence Viewer

Length: 285 bp
ATGGCTTTTCGCGGTGGAGCTTCCCTGTCAAGATCTCTGATCTCCGCCGCAAGAACCTCCGCCGTCCGATCATCTCCGTCGCTCGCATCCCTTCCTCGCTCTCCTCCCCTCCATAATCTCGCCTCCGCCACTCGCCGGAGCCTCTTCTCTCTCCCCGCCAATGTGGGACAGCTGGCCTGCGCTCAGTCGCTGCTGCCGCTCCACAGCGCCGTCGCCTCCGTTCGTATGACCAGTCACATCTCCGGCGAAGCGCGCGCTTTCTGCGAGCTGTCTCAGGGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

9.7

Weight (kDa)

11.9

Isoelectric Point (pI)

76.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 199
AccII CGCG 3 cut(s) 12, 253, 255
AciI CCGC 7 cut(s) 12, 45, 48, 60, 126, 156, 197
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 135
AluBI AGCT 3 cut(s) 20, 172, 268
AluI AGCT 3 cut(s) 20, 172, 268
Alw26I GTCTC 1 cut(s) 276
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 190, 193
AspLEI GCGC 5 cut(s) 182, 209, 253, 255, 257
BbvI GCAGC 2 cut(s) 177, 180
BceAI ACGGC 2 cut(s) 47, 194
BcoDI GTCTC 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 210
BglII AGATCT 1 cut(s) 32
BisI GCNGC 4 cut(s) 48, 191, 194, 197
BlsI GCNGC 4 cut(s) 49, 192, 195, 198
BmiI GGNNCC 1 cut(s) 140
BmsI GCATC 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 231
BsePI GCGCGC 2 cut(s) 251, 253
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 177, 180
Bsh1236I CGCG 3 cut(s) 12, 253, 255
BshFI GGCC 1 cut(s) 176
BsiSI CCGG 2 cut(s) 136, 243
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 32, 39, 68
BspACI CCGC 7 cut(s) 12, 45, 48, 60, 126, 156, 197
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 3 cut(s) 12, 253, 255
BspLI GGNNCC 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 199
BsrI ACTGG 1 cut(s) 231
BssHII GCGCGC 2 cut(s) 251, 253
BssMI GATC 3 cut(s) 32, 39, 68
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 6 cut(s) 84, 174, 178, 253, 255, 266
BstDEI CTNAG 2 cut(s) 183, 273
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 3 cut(s) 12, 253, 255
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 5 cut(s) 182, 209, 253, 255, 257
BstKTI GATC 3 cut(s) 35, 42, 71
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 3 cut(s) 32, 39, 68
BstMWI GCNNNNNNNGC 3 cut(s) 196, 252, 261
BstUI CGCG 3 cut(s) 12, 253, 255
BstV1I GCAGC 2 cut(s) 177, 180
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 6 cut(s) 84, 174, 178, 253, 255, 266
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 5 cut(s) 182, 209, 253, 255, 257
Csp6I GTAC 1 cut(s) 279
CviJI RGCY 6 cut(s) 5, 20, 141, 172, 176, 268
CviKI_1 RGCY 6 cut(s) 5, 20, 141, 172, 176, 268
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 2 cut(s) 183, 273
DpnI GATC 3 cut(s) 34, 41, 70
DpnII GATC 3 cut(s) 32, 39, 68
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 3 cut(s) 34, 49, 115
FaiI YATR 2 cut(s) 114, 227
FaqI GGGAC 1 cut(s) 180
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 4 cut(s) 48, 191, 194, 197
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 4 cut(s) 48, 191, 194, 197
GlaI GCGC 5 cut(s) 181, 208, 252, 254, 256
GluI GCNGC 4 cut(s) 48, 191, 194, 197
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 176
HapII CCGG 2 cut(s) 136, 243
HhaI GCGC 5 cut(s) 182, 209, 253, 255, 257
Hin6I GCGC 5 cut(s) 180, 207, 251, 253, 255
HinP1I GCGC 5 cut(s) 180, 207, 251, 253, 255
HpaII CCGG 2 cut(s) 136, 243
Hpy188I TCNGA 2 cut(s) 39, 68
Hpy188III TCNNGA 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 82, 215
HpyAV CCTTC 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 252, 261
HpyF3I CTNAG 2 cut(s) 183, 273
HspAI GCGC 5 cut(s) 180, 207, 251, 253, 255
Kzo9I GATC 3 cut(s) 32, 39, 68
LmnI GCTCC 3 cut(s) 17, 138, 204
LpnPI CCDG 7 cut(s) 38, 149, 158, 190, 244, 256, 260
Lsp1109I GCAGC 2 cut(s) 177, 180
LweI GCATC 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 233
MalI GATC 3 cut(s) 34, 41, 70
MbiI CCGCTC 1 cut(s) 199
MboI GATC 3 cut(s) 32, 39, 68
MboII GAAGA 1 cut(s) 136
MflI RGATCY 1 cut(s) 32
MnlI CCTC 7 cut(s) 67, 105, 114, 119, 133, 152, 226
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 2 cut(s) 136, 243
MvnI CGCG 3 cut(s) 12, 253, 255
MwoI GCNNNNNNNGC 3 cut(s) 196, 252, 261
NdeII GATC 3 cut(s) 32, 39, 68
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 233
PauI GCGCGC 2 cut(s) 251, 253
PkrI GCNGC 4 cut(s) 49, 192, 195, 198
PspN4I GGNNCC 1 cut(s) 140
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 32
PteI GCGCGC 2 cut(s) 251, 253
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SatI GCNGC 4 cut(s) 48, 191, 194, 197
Sau3AI GATC 3 cut(s) 32, 39, 68
SetI ASST 4 cut(s) 22, 59, 174, 270
SfaNI GCATC 1 cut(s) 95
SsiI CCGC 7 cut(s) 12, 45, 48, 60, 126, 156, 197
TauI GCSGC 2 cut(s) 50, 199
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 190, 193
Tsp45I GTSAC 1 cut(s) 233
TspGWI ACGGA 2 cut(s) 66, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.