AT4G34265

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001279
Physical Location & Seq
Forward (+)
16402129 .. 16403823
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34265.1

Sequence Viewer

Length: 285 bp
ATGGCATGGCGCAGTGCAGCACGCTCTTTCGTCTCCGCTACAGCTAGAGCTCCGTCTCTCCGATCTCCGCCGCCAACGCTTCCCCGCCTCCGTCCTTCCCAATCCTCTTTGCCCCGCCGCCGATTTGCCTCTTTCACTAATCCCAGGAATTTGGGAGAGCTAGGATGCACAGAGTCATTCTTGCCTCTGTACAATGTTGTGGCTGCAGCGAGACTCACATCTCACCTTAATGTTAATCTGCGAGCTTTCTGCGAACTCTCTAACGGGAATGGAAAAGATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.26

Weight (kDa)

11.71

Isoelectric Point (pI)

74.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 36, 68, 71, 85, 115, 118
AcsI RAATTY 1 cut(s) 148
AfaI GTAC 1 cut(s) 191
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 4 cut(s) 44, 50, 160, 245
AluI AGCT 4 cut(s) 44, 50, 160, 245
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 3 cut(s) 37, 60, 205
ApeKI GCWGC 3 cut(s) 17, 203, 206
ApoI RAATTY 1 cut(s) 148
AspLEI GCGC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 215
BanII GRGCYC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 3 cut(s) 29, 190, 218
BccI CCATC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BciT130I CCWGG 1 cut(s) 145
BcoDI GTCTC 3 cut(s) 37, 60, 205
BfaI CTAG 2 cut(s) 45, 161
BfmI CTRYAG 2 cut(s) 39, 204
BisI GCNGC 5 cut(s) 18, 71, 118, 204, 207
BlsI GCNGC 5 cut(s) 19, 72, 119, 205, 208
Bme1390I CCNGG 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 170
BseXI GCAGC 3 cut(s) 29, 190, 218
BsgI GTGCAG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 52
BsmAI GTCTC 3 cut(s) 37, 60, 205
BsmBI CGTCTC 2 cut(s) 37, 60
Bsp1286I GDGCHC 1 cut(s) 52
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 1 cut(s) 62
BspACI CCGC 6 cut(s) 36, 68, 71, 85, 115, 118
BspMAI CTGCAG 1 cut(s) 208
BsrGI TGTACA 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 145
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 22, 243
BstF5I GGATG 1 cut(s) 170
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 65
BstMAI GTCTC 3 cut(s) 37, 60, 205
BstMBI GATC 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 143
BstSFI CTRYAG 2 cut(s) 39, 204
BstV1I GCAGC 3 cut(s) 29, 190, 218
BstXI CCANNNNNNTGG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 22, 243
CfoI GCGC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 6
CviJI RGCY 5 cut(s) 44, 50, 160, 203, 245
CviKI_1 RGCY 5 cut(s) 44, 50, 160, 203, 245
CviQI GTAC 1 cut(s) 190
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 52
Esp3I CGTCTC 2 cut(s) 37, 60
FaeI CATG 1 cut(s) 9
FaiI YATR 1 cut(s) 7
FatI CATG 1 cut(s) 5
FauI CCCGC 2 cut(s) 92, 122
Fnu4HI GCNGC 5 cut(s) 18, 71, 118, 204, 207
FokI GGATG 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 5 cut(s) 18, 71, 118, 204, 207
FspBI CTAG 2 cut(s) 45, 161
GlaI GCGC 1 cut(s) 11
GluI GCNGC 5 cut(s) 18, 71, 118, 204, 207
HhaI GCGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 9
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 2 cut(s) 173, 213
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 17, 168, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
Hsp92II CATG 1 cut(s) 9
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 62
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 2 cut(s) 130, 157
Lsp1109I GCAGC 3 cut(s) 29, 190, 218
LweI GCATC 1 cut(s) 155
MaeI CTAG 2 cut(s) 45, 161
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 1 cut(s) 148
MlyI GAGTC 2 cut(s) 182, 207
MnlI CCTC 4 cut(s) 98, 115, 139, 195
MseI TTAA 2 cut(s) 228, 234
MslI CAYNNNNRTG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 1 cut(s) 62
NlaIII CATG 1 cut(s) 9
PkrI GCNGC 5 cut(s) 19, 72, 119, 205, 208
PleI GAGTC 2 cut(s) 181, 207
PpsI GAGTC 2 cut(s) 181, 207
Psp124BI GAGCTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PstI CTGCAG 1 cut(s) 208
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 228, 234
SatI GCNGC 5 cut(s) 18, 71, 118, 204, 207
Sau3AI GATC 1 cut(s) 62
SchI GAGTC 2 cut(s) 182, 207
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 1 cut(s) 52
SetI ASST 5 cut(s) 46, 52, 162, 228, 247
SfaNI GCATC 1 cut(s) 155
SfcI CTRYAG 2 cut(s) 39, 204
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 1 cut(s) 148
SsiI CCGC 6 cut(s) 36, 68, 71, 85, 115, 118
SspMI CTAG 2 cut(s) 45, 161
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 143
TasI AATT 1 cut(s) 148
TatI WGTACW 1 cut(s) 189
TauI GCSGC 2 cut(s) 73, 120
Tru1I TTAA 2 cut(s) 228, 234
Tru9I TTAA 2 cut(s) 228, 234
TscAI CASTG 1 cut(s) 19
TseI GCWGC 3 cut(s) 17, 203, 206
TspGWI ACGGA 2 cut(s) 42, 80
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 148
XspI CTAG 2 cut(s) 45, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.