Rh2AG190900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001279
Physical Location & Seq
Forward (+)
18898996 .. 18899850
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG190900.1

Sequence Viewer

Length: 240 bp
ATGGCCTCCGCCACTCGCCGGACTCTCTTCTCTCTCCCCGCCAATGTGGGACAGCTGGCCTGCGCTCAGTCGCTGCTGCCGTTCCACAGCGCCGTCGCCTCCGTTCGTATGACCAGTCACATCTCCGGCGAAGTGCGCGCTTTCTGCGAGTTGTCTCAGGGTACCTCCATTGATCCCTCGTACTTGAGCATACTTGGGTTGGATCAACACAGCAAGAGTTGCTGCATTAGGTGGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.47

Weight (kDa)

8.51

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 161
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 9, 39
AclWI GGATC 2 cut(s) 167, 210
AfaI GTAC 2 cut(s) 163, 182
AfiI CCNNNNNNNGG 1 cut(s) 18
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 2 cut(s) 167, 210
AlwNI CAGNNNCTG 1 cut(s) 73
AoxI GGCC 2 cut(s) 3, 57
ApeKI GCWGC 3 cut(s) 73, 76, 222
Asp718I GGTACC 1 cut(s) 161
AspLEI GCGC 4 cut(s) 65, 92, 138, 140
BanI GGYRCC 1 cut(s) 161
BbvI GCAGC 3 cut(s) 60, 63, 209
BceAI ACGGC 2 cut(s) 64, 77
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 238
BfoI RGCGCY 1 cut(s) 93
BisI GCNGC 3 cut(s) 74, 77, 223
BlsI GCNGC 3 cut(s) 75, 78, 224
BmiI GGNNCC 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 80, 170
BseNI ACTGG 1 cut(s) 114
BsePI GCGCGC 1 cut(s) 136
BseXI GCAGC 3 cut(s) 60, 63, 209
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 5, 59
BshNI GGYRCC 1 cut(s) 161
BsiSI CCGG 2 cut(s) 19, 126
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 2 cut(s) 5, 59
Bsp143I GATC 2 cut(s) 172, 202
BspACI CCGC 2 cut(s) 9, 39
BspANI GGCC 2 cut(s) 5, 59
BspCNI CTCAG 2 cut(s) 79, 169
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 2 cut(s) 167, 210
BspT107I GGYRCC 1 cut(s) 161
BsrI ACTGG 1 cut(s) 114
BssHII GCGCGC 1 cut(s) 136
BssMI GATC 2 cut(s) 172, 202
Bst6I CTCTTC 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 219
BstC8I GCNNGC 3 cut(s) 57, 61, 138
BstDEI CTNAG 2 cut(s) 66, 156
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 4 cut(s) 65, 92, 138, 140
BstKTI GATC 2 cut(s) 175, 205
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 2 cut(s) 172, 202
BstMWI GCNNNNNNNGC 3 cut(s) 135, 144, 219
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 3 cut(s) 60, 63, 209
BsuRI GGCC 2 cut(s) 5, 59
Cac8I GCNNGC 3 cut(s) 57, 61, 138
CaiI CAGNNNCTG 1 cut(s) 73
CfoI GCGC 4 cut(s) 65, 92, 138, 140
Csp6I GTAC 2 cut(s) 162, 181
CviJI RGCY 4 cut(s) 5, 55, 59, 237
CviKI_1 RGCY 4 cut(s) 5, 55, 59, 237
CviQI GTAC 2 cut(s) 162, 181
DdeI CTNAG 2 cut(s) 66, 156
DpnI GATC 2 cut(s) 174, 204
DpnII GATC 2 cut(s) 172, 202
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
FaiI YATR 2 cut(s) 110, 191
FaqI GGGAC 1 cut(s) 63
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 74, 77, 223
Fsp4HI GCNGC 3 cut(s) 74, 77, 223
FspBI CTAG 1 cut(s) 238
GlaI GCGC 4 cut(s) 64, 91, 137, 139
GluI GCNGC 3 cut(s) 74, 77, 223
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 5, 59
HapII CCGG 2 cut(s) 19, 126
HhaI GCGC 4 cut(s) 65, 92, 138, 140
Hin6I GCGC 4 cut(s) 63, 90, 136, 138
HinP1I GCGC 4 cut(s) 63, 90, 136, 138
HinfI GANTC 1 cut(s) 22
HpaII CCGG 2 cut(s) 19, 126
Hpy99I CGWCG 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 144, 219
HpyF3I CTNAG 2 cut(s) 66, 156
HspAI GCGC 4 cut(s) 63, 90, 136, 138
KpnI GGTACC 1 cut(s) 165
Kzo9I GATC 2 cut(s) 172, 202
LpnPI CCDG 6 cut(s) 32, 41, 73, 127, 139, 143
Lsp1109I GCAGC 3 cut(s) 60, 63, 209
MaeI CTAG 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 174, 204
MboI GATC 2 cut(s) 172, 202
MboII GAAGA 1 cut(s) 19
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 16, 109, 175, 187
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 2 cut(s) 19, 126
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 135, 144, 219
NdeII GATC 2 cut(s) 172, 202
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 116
PauI GCGCGC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PkrI GCNGC 3 cut(s) 75, 78, 224
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 73
PteI GCGCGC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 55
RsaI GTAC 2 cut(s) 163, 182
RsaNI GTAC 2 cut(s) 162, 181
SatI GCNGC 3 cut(s) 74, 77, 223
Sau3AI GATC 2 cut(s) 172, 202
SchI GAGTC 1 cut(s) 16
SetI ASST 3 cut(s) 57, 167, 233
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
SsiI CCGC 2 cut(s) 9, 39
SspMI CTAG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 3 cut(s) 73, 76, 222
Tsp45I GTSAC 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 91
XspI CTAG 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.