Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001279

Physical Location & Seq

Genomic Coordinates Forward (+)

12156734 .. 12157584

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCTTGGCGCTCAGCTGGTTCGCTGTCTCGGTCATTGGTGTCCAACGCAAGGGTTTCGTCGCTCCGCTCGGCGCCCCCTCTCCGTCGCCTCCGCCCGCCGTCGCTCTCCACTCCTCGTCGCCTCTTCGCTTCTCCCAGGAACTTGGGTGAACTGGGATGCATACAATCGCTTTTGCCAATGCACTGCATGACGGCTGCAACCTGCCTCACATCTCACCTGGCTGCCAACGTGCGGGGTTGTTGCGAGTTGTCACACGGTACCTTCTGCCGCACTTGTCAGGATCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.45

Weight (kDa)

11.27

Isoelectric Point (pI)

76.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265
fragaria_vesca	FvH4_1g16960 FvH4_1g16960 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800
malus_domestica	MD02G1179900.v1.1 MD10G1099700.v1.1
prunus_persica	Prupe.6G226300_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1
pyrus_communis	pycom02g14580 pycom05g09150 pycom10g08580
rosa_chinensis	RchiOBHm_Chr2g0107061 RchiOBHm_Chr6g0254531
rosa_multiflora	Rmu_sc0002116.1_g000003 Rmu_sc0004298.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136650 Rroxscaffold_7G00210700
rosa_rugosa	Rorug02G0140100 Rorug02G0140100 Rorug05G0553000 Rorug05G0553100 Rorug05G0553200
rosa_samantha	Rh2AG190900 Rh2BG202600 Rh2CG195800 Rh2DG198100 Rh6AG070100 Rh6BG062600 Rh6CG062500 Rh6DG059500
rosa_wichuraiana	Rw2G015060 Rw6G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	2 cut(s)	73, 260
AccBSI	CCGCTC	1 cut(s)	69
AciI	CCGC	5 cut(s)	67, 94, 98, 235, 271
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	2 cut(s)	51, 234
AjnI	CCWGG	2 cut(s)	137, 219
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	197, 224
Asp718I	GGTACC	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	12, 76
AsuHPI	GGTGA	2 cut(s)	161, 209
BanI	GGYRCC	2 cut(s)	73, 260
BbvI	GCAGC	2 cut(s)	184, 211
BceAI	ACGGC	2 cut(s)	85, 210
BcgI	CGANNNNNNTGC	2 cut(s)	39, 73
BciT130I	CCWGG	2 cut(s)	139, 221
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	289
BfoI	RGCGCY	2 cut(s)	13, 77
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	3 cut(s)	198, 225, 271
BlpI	GCTNAGC	1 cut(s)	13
BlsI	GCNGC	3 cut(s)	199, 226, 272
Bme1390I	CCNGG	2 cut(s)	139, 221
BmiI	GGNNCC	2 cut(s)	75, 262
BmrFI	CCNGG	2 cut(s)	139, 221
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 234
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	139, 221
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	51, 234
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	184, 211
BshNI	GGYRCC	2 cut(s)	73, 260
BslI	CCNNNNNNNGG	2 cut(s)	51, 234
BsmAI	GTCTC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	283
Bsp1720I	GCTNAGC	1 cut(s)	13
BspACI	CCGC	5 cut(s)	67, 94, 98, 235, 271
BspCNI	CTCAG	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	75, 262
BspMI	ACCTGC	1 cut(s)	212
BspT107I	GGYRCC	2 cut(s)	73, 260
BsrBI	CCGCTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	283
BssNI	GRCGYC	1 cut(s)	74
Bst2UI	CCWGG	2 cut(s)	139, 221
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	164
BstH2I	RGCGCY	2 cut(s)	13, 77
BstHHI	GCGC	2 cut(s)	12, 76
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	283
BstNI	CCWGG	2 cut(s)	139, 221
BstSCI	CCNGG	2 cut(s)	137, 219
BstV1I	GCAGC	2 cut(s)	184, 211
BstXI	CCANNNNNNTGG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	164
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	98
CfoI	GCGC	2 cut(s)	12, 76
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	4 cut(s)	5, 17, 197, 224
CviKI_1	RGCY	4 cut(s)	5, 17, 197, 224
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	1 cut(s)	13
DinI	GGCGCC	1 cut(s)	75
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	137, 219
EcoT22I	ATGCAT	1 cut(s)	164
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
FaeI	CATG	1 cut(s)	193
FaiI	YATR	2 cut(s)	164, 191
FatI	CATG	1 cut(s)	189
FauI	CCCGC	2 cut(s)	105, 228
Fnu4HI	GCNGC	3 cut(s)	198, 225, 271
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	3 cut(s)	198, 225, 271
FspBI	CTAG	1 cut(s)	289
GlaI	GCGC	2 cut(s)	11, 75
GluI	GCNGC	3 cut(s)	198, 225, 271
HaeII	RGCGCY	2 cut(s)	13, 77
HhaI	GCGC	2 cut(s)	12, 76
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	2 cut(s)	10, 74
HinP1I	GCGC	2 cut(s)	10, 74
HphI	GGTGA	2 cut(s)	161, 209
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	4 cut(s)	64, 90, 106, 123
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	162, 184, 189, 200
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	2 cut(s)	10, 74
KasI	GGCGCC	1 cut(s)	73
KpnI	GGTACC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	8 cut(s)	3, 124, 140, 151, 206, 217, 233, 266
Lsp1109I	GCAGC	2 cut(s)	184, 211
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	289
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	1 cut(s)	285
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	118
Mly113I	GGCGCC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	5 cut(s)	90, 101, 126, 134, 218
Mph1103I	ATGCAT	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	139, 221
MvaI	CCWGG	2 cut(s)	139, 221
NarI	GGCGCC	1 cut(s)	74
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	75, 262
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	199, 226, 272
PluTI	GGCGCC	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	137, 219
PspGI	CCWGG	2 cut(s)	137, 219
PspN4I	GGNNCC	2 cut(s)	75, 262
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SatI	GCNGC	3 cut(s)	198, 225, 271
Sau3AI	GATC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	139, 221
SetI	ASST	5 cut(s)	19, 206, 222, 234, 266
SfaNI	GCATC	1 cut(s)	149
SfoI	GGCGCC	1 cut(s)	75
SsiI	CCGC	5 cut(s)	67, 94, 98, 235, 271
SspDI	GGCGCC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	289
StyD4I	CCNGG	2 cut(s)	137, 219
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	234
TaqII	GACCGA	1 cut(s)	21
TauI	GCSGC	1 cut(s)	273
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	2 cut(s)	197, 224
Tsp45I	GTSAC	1 cut(s)	252
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	191
XspI	CTAG	1 cut(s)	289
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.