Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001279

Physical Location & Seq

Genomic Coordinates Reverse (-)

74326840 .. 74328131

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTTGGCGCGGTGGATCGTCCCTGTCGAGATCTCTGATCTCCGCCGCAAGAACCTCCACCGTCCGATCACCTCCGTCGATCTCATCCCTCCCTCGCTCTCCTCCGCTCCGTAATATGGCCTCCGCCACTCGCCGGACTCTCTTCTCTCTCCCCGCCAATGTGGGACAGCTGGCCTGCGCTCAGTCGCTGCTGCCATTCCACAGCGCCGTCGCCTCCGTTCGTATGACCAGTCACATCTCCGGCGAAGCGCGCGCTTTCTGCGAGTTGTCTCAGGGTACCTCCATTGATCCCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.4

Weight (kDa)

11.82

Isoelectric Point (pI)

79.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265
fragaria_vesca	FvH4_1g16960 FvH4_1g16960 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800
malus_domestica	MD02G1179900.v1.1 MD10G1099700.v1.1
prunus_persica	Prupe.6G226300_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1
pyrus_communis	pycom02g14580 pycom05g09150 pycom10g08580
rosa_chinensis	RchiOBHm_Chr2g0107061 RchiOBHm_Chr6g0254531
rosa_multiflora	Rmu_sc0002116.1_g000003 Rmu_sc0004298.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136650 Rroxscaffold_7G00210700
rosa_rugosa	Rorug02G0140100 Rorug02G0140100 Rorug05G0553000 Rorug05G0553100 Rorug05G0553200
rosa_samantha	Rh2AG190900 Rh2BG202600 Rh2CG195800 Rh2DG198100 Rh6AG070100 Rh6BG062600 Rh6CG062500 Rh6DG059500
rosa_wichuraiana	Rw2G015060 Rw6G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	109
AccII	CGCG	3 cut(s)	12, 253, 255
AciI	CCGC	6 cut(s)	12, 45, 48, 107, 126, 156
AclWI	GGATC	2 cut(s)	25, 284
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	2 cut(s)	118, 135
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	25, 284
AlwNI	CAGNNNCTG	1 cut(s)	190
AoxI	GGCC	2 cut(s)	120, 174
ApeKI	GCWGC	2 cut(s)	190, 193
Asp718I	GGTACC	1 cut(s)	278
AspLEI	GCGC	6 cut(s)	12, 182, 209, 253, 255, 257
AsuHPI	GGTGA	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	177, 180
BceAI	ACGGC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	210
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	3 cut(s)	48, 191, 194
BlsI	GCNGC	3 cut(s)	49, 192, 195
BmiI	GGNNCC	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 135
Bse1I	ACTGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	118, 135
BseMII	CTCAG	2 cut(s)	197, 287
BseNI	ACTGG	1 cut(s)	231
BsePI	GCGCGC	2 cut(s)	251, 253
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	177, 180
Bsh1236I	CGCG	3 cut(s)	12, 253, 255
BshFI	GGCC	2 cut(s)	122, 176
BshNI	GGYRCC	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	136, 243
BslFI	GGGAC	2 cut(s)	7, 180
BslI	CCNNNNNNNGG	2 cut(s)	118, 135
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	2 cut(s)	7, 180
BsnI	GGCC	2 cut(s)	122, 176
Bsp143I	GATC	6 cut(s)	17, 32, 39, 68, 81, 289
BspACI	CCGC	6 cut(s)	12, 45, 48, 107, 126, 156
BspANI	GGCC	2 cut(s)	122, 176
BspCNI	CTCAG	2 cut(s)	196, 286
BspFNI	CGCG	3 cut(s)	12, 253, 255
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	2 cut(s)	25, 284
BspT107I	GGYRCC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	231
BssHII	GCGCGC	2 cut(s)	251, 253
BssMI	GATC	6 cut(s)	17, 32, 39, 68, 81, 289
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	4 cut(s)	174, 178, 253, 255
BstDEI	CTNAG	2 cut(s)	183, 273
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	3 cut(s)	12, 253, 255
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	6 cut(s)	12, 182, 209, 253, 255, 257
BstKTI	GATC	6 cut(s)	20, 35, 42, 71, 84, 292
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	6 cut(s)	17, 32, 39, 68, 81, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 261
BstUI	CGCG	3 cut(s)	12, 253, 255
BstV1I	GCAGC	2 cut(s)	177, 180
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	122, 176
BtsCI	GGATG	1 cut(s)	86
Cac8I	GCNNGC	4 cut(s)	174, 178, 253, 255
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	6 cut(s)	12, 182, 209, 253, 255, 257
Csp6I	GTAC	1 cut(s)	279
CviJI	RGCY	4 cut(s)	5, 122, 172, 176
CviKI_1	RGCY	4 cut(s)	5, 122, 172, 176
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	2 cut(s)	183, 273
DpnI	GATC	6 cut(s)	19, 34, 41, 70, 83, 291
DpnII	GATC	6 cut(s)	17, 32, 39, 68, 81, 289
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EciI	GGCGGA	2 cut(s)	34, 115
FaiI	YATR	2 cut(s)	119, 227
FaqI	GGGAC	2 cut(s)	7, 180
FauI	CCCGC	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	48, 191, 194
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	3 cut(s)	48, 191, 194
GlaI	GCGC	6 cut(s)	11, 181, 208, 252, 254, 256
GluI	GCNGC	3 cut(s)	48, 191, 194
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	122, 176
HapII	CCGG	2 cut(s)	136, 243
HhaI	GCGC	6 cut(s)	12, 182, 209, 253, 255, 257
Hin6I	GCGC	6 cut(s)	10, 180, 207, 251, 253, 255
HinP1I	GCGC	6 cut(s)	10, 180, 207, 251, 253, 255
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	136, 243
HphI	GGTGA	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	39, 68
Hpy188III	TCNNGA	1 cut(s)	30
Hpy99I	CGWCG	2 cut(s)	82, 215
HpyCH4III	ACNGT	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 261
HpyF3I	CTNAG	2 cut(s)	183, 273
HspAI	GCGC	6 cut(s)	10, 180, 207, 251, 253, 255
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	6 cut(s)	17, 32, 39, 68, 81, 289
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	7 cut(s)	38, 149, 158, 190, 244, 256, 260
Lsp1109I	GCAGC	2 cut(s)	177, 180
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	6 cut(s)	19, 34, 41, 70, 83, 291
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	6 cut(s)	17, 32, 39, 68, 81, 289
MboII	GAAGA	1 cut(s)	136
MflI	RGATCY	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	8 cut(s)	67, 84, 101, 105, 114, 133, 226, 292
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	2 cut(s)	136, 243
MvnI	CGCG	3 cut(s)	12, 253, 255
MwoI	GCNNNNNNNGC	2 cut(s)	252, 261
NdeII	GATC	6 cut(s)	17, 32, 39, 68, 81, 289
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	233
PauI	GCGCGC	2 cut(s)	251, 253
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	49, 192, 195
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	32
PteI	GCGCGC	2 cut(s)	251, 253
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SatI	GCNGC	3 cut(s)	48, 191, 194
Sau3AI	GATC	6 cut(s)	17, 32, 39, 68, 81, 289
SchI	GAGTC	1 cut(s)	133
SetI	ASST	4 cut(s)	59, 76, 174, 284
SsiI	CCGC	6 cut(s)	12, 45, 48, 107, 126, 156
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	29, 80
TauI	GCSGC	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	190, 193
Tsp45I	GTSAC	1 cut(s)	233
TspGWI	ACGGA	3 cut(s)	66, 101, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.