Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001279

Physical Location & Seq

Genomic Coordinates Reverse (-)

6103603 .. 6106038

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG059500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCTTTGCGCTCTGCTGGTTCGCTCTCTCGGTCCTTGGCCTCCACCGCTAGGGTTTCGCTCCACCGCTCCGCCCCTACTCTCCGGCGCCTCCGCCCGCCGACCTCTCCGGCCACTCGCCGCTTCTCCTTCACCTCTCCCAGGAACTTGGGAGAACTGGGATGCACACAATCGCTGCTGCATTTGCGAGCTGCAACATGCCTCACATCCCACCTGACTGTCAATGCGCGTGCTTGTTGCGAGTTGTCCCACGGTACCTTCTGCCGTACTTGTCAGGATCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.25

Weight (kDa)

11.6

Isoelectric Point (pI)

78.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265
fragaria_vesca	FvH4_1g16960 FvH4_1g16960 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800
malus_domestica	MD02G1179900.v1.1 MD10G1099700.v1.1
prunus_persica	Prupe.6G226300_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1
pyrus_communis	pycom02g14580 pycom05g09150 pycom10g08580
rosa_chinensis	RchiOBHm_Chr2g0107061 RchiOBHm_Chr6g0254531
rosa_multiflora	Rmu_sc0002116.1_g000003 Rmu_sc0004298.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136650 Rroxscaffold_7G00210700
rosa_rugosa	Rorug02G0140100 Rorug02G0140100 Rorug05G0553000 Rorug05G0553100 Rorug05G0553200
rosa_samantha	Rh2AG190900 Rh2BG202600 Rh2CG195800 Rh2DG198100 Rh6AG070100 Rh6BG062600 Rh6CG062500 Rh6DG059500
rosa_wichuraiana	Rw2G015060 Rw6G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	2 cut(s)	87, 254
AccBSI	CCGCTC	1 cut(s)	69
AccII	CGCG	1 cut(s)	229
AciI	CCGC	6 cut(s)	48, 67, 72, 94, 98, 121
AcoI	YGGCCR	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	2 cut(s)	256, 268
AfiI	CCNNNNNNNGG	2 cut(s)	51, 141
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
AoxI	GGCC	2 cut(s)	39, 111
ApeKI	GCWGC	3 cut(s)	175, 178, 191
Asp718I	GGTACC	1 cut(s)	254
AspLEI	GCGC	3 cut(s)	12, 90, 229
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	33
BanI	GGYRCC	2 cut(s)	87, 254
BbvI	GCAGC	3 cut(s)	162, 165, 178
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	142
BfaI	CTAG	2 cut(s)	51, 283
BfoI	RGCGCY	1 cut(s)	91
BisI	GCNGC	4 cut(s)	121, 176, 179, 192
BlsI	GCNGC	4 cut(s)	122, 177, 180, 193
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	89, 256
BmrFI	CCNGG	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	88
BsaJI	CCNNGG	3 cut(s)	36, 140, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 141
Bse1I	ACTGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	3 cut(s)	36, 140, 250
BseGI	GGATG	2 cut(s)	167, 206
BseLI	CCNNNNNNNGG	2 cut(s)	51, 141
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	162, 165, 178
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	2 cut(s)	41, 113
BshNI	GGYRCC	2 cut(s)	87, 254
BsiSI	CCGG	2 cut(s)	85, 110
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	51, 141
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	41, 113
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	6 cut(s)	48, 67, 72, 94, 98, 121
BspANI	GGCC	2 cut(s)	41, 113
BspFNI	CGCG	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	89, 256
BspT107I	GGYRCC	2 cut(s)	87, 254
BsrBI	CCGCTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	3 cut(s)	36, 140, 250
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	220, 254
BstACI	GRCGYC	1 cut(s)	88
BstC8I	GCNNGC	3 cut(s)	98, 189, 231
BstDSI	CCRYGG	1 cut(s)	250
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	167, 206
BstFNI	CGCG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	3 cut(s)	12, 90, 229
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 184
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	140
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	3 cut(s)	162, 165, 178
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	41, 113
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	167, 206
Cac8I	GCNNGC	3 cut(s)	98, 189, 231
CfoI	GCGC	3 cut(s)	12, 90, 229
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	255, 267
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	4 cut(s)	5, 41, 113, 191
CviKI_1	RGCY	4 cut(s)	5, 41, 113, 191
CviQI	GTAC	2 cut(s)	255, 267
DinI	GGCGCC	1 cut(s)	89
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	111
EciI	GGCGGA	2 cut(s)	61, 83
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	89
EheI	GGCGCC	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	201
FaiI	YATR	1 cut(s)	199
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	197
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	121, 176, 179, 192
FokI	GGATG	2 cut(s)	174, 193
Fsp4HI	GCNGC	4 cut(s)	121, 176, 179, 192
FspBI	CTAG	2 cut(s)	51, 283
GlaI	GCGC	3 cut(s)	11, 89, 228
GluI	GCNGC	4 cut(s)	121, 176, 179, 192
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	41, 113
HapII	CCGG	2 cut(s)	85, 110
HhaI	GCGC	3 cut(s)	12, 90, 229
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	201
Hin6I	GCGC	3 cut(s)	10, 88, 227
HinP1I	GCGC	3 cut(s)	10, 88, 227
HpaII	CCGG	2 cut(s)	85, 110
HphI	GGTGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	139, 268
HpyCH4III	ACNGT	2 cut(s)	220, 254
HpyCH4V	TGCA	3 cut(s)	165, 181, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 184
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	201
HspAI	GCGC	3 cut(s)	10, 88, 227
KasI	GGCGCC	1 cut(s)	87
KpnI	GGTACC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	2 cut(s)	66, 74
LpnPI	CCDG	8 cut(s)	3, 98, 123, 127, 143, 154, 227, 260
Lsp1109I	GCAGC	3 cut(s)	162, 165, 178
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	2 cut(s)	51, 283
MalI	GATC	1 cut(s)	279
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	1 cut(s)	277
Mly113I	GGCGCC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	52, 101, 115, 145, 212
MspI	CCGG	2 cut(s)	85, 110
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	47, 184
NarI	GGCGCC	1 cut(s)	88
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	2 cut(s)	89, 256
NspI	RCATGY	1 cut(s)	201
PkrI	GCNGC	4 cut(s)	122, 177, 180, 193
PluTI	GGCGCC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	89, 256
PspPI	GGNCC	1 cut(s)	33
RsaI	GTAC	2 cut(s)	256, 268
RsaNI	GTAC	2 cut(s)	255, 267
SatI	GCNGC	4 cut(s)	121, 176, 179, 192
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	142
SetI	ASST	5 cut(s)	107, 137, 193, 216, 260
SfaNI	GCATC	1 cut(s)	152
SfoI	GGCGCC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	33
SsiI	CCGC	6 cut(s)	48, 67, 72, 94, 98, 121
SspDI	GGCGCC	1 cut(s)	87
SspMI	CTAG	2 cut(s)	51, 283
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	220, 254
TaqII	GACCGA	1 cut(s)	21
TauI	GCSGC	1 cut(s)	123
TseI	GCWGC	3 cut(s)	175, 178, 191
VpaK11BI	GGWCC	1 cut(s)	33
XagI	CCTNNNNNAGG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	201
XspI	CTAG	2 cut(s)	51, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.