Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001279

Physical Location & Seq

Genomic Coordinates Reverse (-)

23044633 .. 23046131

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G226300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCGTGGCGATCTGGGTCATCGCTATCAAGGTCTCTAATCTCAACAGCAAGAGCTTCAACAATCCGGTCATCTCCATCAATCTCGTCCCTTCCTCGCTCTCCGCTTCATAATCTCCGGACCAGCTCGCGCCGTTCCCTCTTCTCCCTCCCAGTGAATGTGAGCCAATTAGCCTGCGCGCAATCGCTGATGCCATTGCACAGCGCACTAGCCTCGGCCCGGCTCACAAGCCACATTTCCGTCGAAGCGCGCCATTGTTGCGAGCTGTCTCAGGGTACCTCCATTGATCCCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.46

Weight (kDa)

11.63

Isoelectric Point (pI)

96.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265
fragaria_vesca	FvH4_1g16960 FvH4_1g16960 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800
malus_domestica	MD02G1179900.v1.1 MD10G1099700.v1.1
prunus_persica	Prupe.6G226300_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1
pyrus_communis	pycom02g14580 pycom05g09150 pycom10g08580
rosa_chinensis	RchiOBHm_Chr2g0107061 RchiOBHm_Chr6g0254531
rosa_multiflora	Rmu_sc0002116.1_g000003 Rmu_sc0004298.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136650 Rroxscaffold_7G00210700
rosa_rugosa	Rorug02G0140100 Rorug02G0140100 Rorug05G0553000 Rorug05G0553100 Rorug05G0553200
rosa_samantha	Rh2AG190900 Rh2BG202600 Rh2CG195800 Rh2DG198100 Rh6AG070100 Rh6BG062600 Rh6CG062500 Rh6DG059500
rosa_wichuraiana	Rw2G015060 Rw6G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	3 cut(s)	130, 179, 250
AccIII	TCCGGA	1 cut(s)	117
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	60
AluBI	AGCT	3 cut(s)	56, 126, 265
AluI	AGCT	3 cut(s)	56, 126, 265
Alw26I	GTCTC	2 cut(s)	39, 273
AlwI	GGATC	1 cut(s)	281
Aor13HI	TCCGGA	1 cut(s)	117
AoxI	GGCC	1 cut(s)	216
Asp718I	GGTACC	1 cut(s)	275
AspLEI	GCGC	6 cut(s)	132, 179, 181, 206, 250, 252
AspS9I	GGNCC	2 cut(s)	120, 217
AsuC2I	CCSGG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	275
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	39, 273
BfaI	CTAG	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	120, 217
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	220
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	2 cut(s)	66, 117
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	194
BseAI	TCCGGA	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	152
BsePI	GCGCGC	2 cut(s)	177, 248
Bsh1236I	CGCG	3 cut(s)	130, 179, 250
BshFI	GGCC	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	275
BsiSI	CCGG	3 cut(s)	67, 118, 220
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	39, 273
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	218
Bso31I	GGTCTC	1 cut(s)	39
Bsp13I	TCCGGA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	11, 286
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	1 cut(s)	283
BspEI	TCCGGA	1 cut(s)	117
BspFNI	CGCG	3 cut(s)	130, 179, 250
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	213
BssHII	GCGCGC	2 cut(s)	177, 248
BssMI	GATC	2 cut(s)	11, 286
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	5 cut(s)	128, 175, 179, 250, 263
BstDEI	CTNAG	1 cut(s)	270
BstFNI	CGCG	3 cut(s)	130, 179, 250
BstHHI	GCGC	6 cut(s)	132, 179, 181, 206, 250, 252
BstKTI	GATC	2 cut(s)	14, 289
BstMAI	GTCTC	2 cut(s)	39, 273
BstMBI	GATC	2 cut(s)	11, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	218
BstUI	CGCG	3 cut(s)	130, 179, 250
BsuRI	GGCC	1 cut(s)	218
BtgZI	GCGATG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	5 cut(s)	128, 175, 179, 250, 263
CfoI	GCGC	6 cut(s)	132, 179, 181, 206, 250, 252
Cfr13I	GGNCC	2 cut(s)	120, 217
Csp6I	GTAC	1 cut(s)	276
CviJI	RGCY	9 cut(s)	56, 126, 165, 173, 212, 218, 223, 231, 265
CviKI_1	RGCY	9 cut(s)	56, 126, 165, 173, 212, 218, 223, 231, 265
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	13, 288
DpnII	GATC	2 cut(s)	11, 286
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	120
FaiI	YATR	1 cut(s)	111
FaqI	GGGAC	1 cut(s)	73
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	6 cut(s)	131, 178, 180, 205, 249, 251
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	3 cut(s)	67, 118, 220
HhaI	GCGC	6 cut(s)	132, 179, 181, 206, 250, 252
Hin6I	GCGC	6 cut(s)	130, 177, 179, 204, 248, 250
HinP1I	GCGC	6 cut(s)	130, 177, 179, 204, 248, 250
HpaII	CCGG	3 cut(s)	67, 118, 220
Hpy188III	TCNNGA	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	101
HpyCH4V	TGCA	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	270
HspAI	GCGC	6 cut(s)	130, 177, 179, 204, 248, 250
Kpn2I	TCCGGA	1 cut(s)	117
KpnI	GGTACC	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	11, 286
LpnPI	CCDG	7 cut(s)	80, 131, 136, 165, 187, 233, 257
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	209
MalI	GATC	2 cut(s)	13, 288
MboI	GATC	2 cut(s)	11, 286
MboII	GAAGA	1 cut(s)	133
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	5 cut(s)	105, 149, 158, 223, 289
MroI	TCCGGA	1 cut(s)	117
MspI	CCGG	3 cut(s)	67, 118, 220
MspR9I	CCNGG	1 cut(s)	220
MvnI	CGCG	3 cut(s)	130, 179, 250
MwoI	GCNNNNNNNGC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	2 cut(s)	11, 286
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	194
PauI	GCGCGC	2 cut(s)	177, 248
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	120, 217
PteI	GCGCGC	2 cut(s)	177, 248
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
Sau3AI	GATC	2 cut(s)	11, 286
Sau96I	GGNCC	2 cut(s)	120, 217
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	5 cut(s)	35, 58, 128, 267, 281
SfaNI	GCATC	1 cut(s)	180
SinI	GGWCC	1 cut(s)	120
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	218
TaqI	TCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	167
TscAI	CASTG	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	98
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	120
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.