Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001279

Physical Location & Seq

Genomic Coordinates Reverse (-)

9840092 .. 9842901

Gene Structure 2810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG062600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACCCACTCACAAAACCTTTACAAAACCCTCACAAAGGCTTTAGCCACAAACACTGTGAAAAGAGAAAAAATGGCTTTGCGCTCTGCTGGTTCGCTCTCTCGGTCCTTGGCCTCCACCGCTAGGGTTTCGCTCCACCGCTCCGCCCCAACTCTCCGGCGCCTCCGCCCGCCGACCGCTCCGGCCACTCGCCGCTTCTCCTTCACCTCTCCCAGGAACTTGGGAGAACTGGGATGCACACAGTCGCTGCTGCATATGCGAGCTGCAGCATGCCTCACATCTCACCTGACTGTCAATGCGCGTGCTTGTTGCGAGTTGTCCCACGGTACCTTCTGCCGTACTTGTCAGGATCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.98

Weight (kDa)

11.43

Isoelectric Point (pI)

68.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265
fragaria_vesca	FvH4_1g16960 FvH4_1g16960 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800
malus_domestica	MD02G1179900.v1.1 MD10G1099700.v1.1
prunus_persica	Prupe.6G226300_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1
pyrus_communis	pycom02g14580 pycom05g09150 pycom10g08580
rosa_chinensis	RchiOBHm_Chr2g0107061 RchiOBHm_Chr6g0254531
rosa_multiflora	Rmu_sc0002116.1_g000003 Rmu_sc0004298.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136650 Rroxscaffold_7G00210700
rosa_rugosa	Rorug02G0140100 Rorug02G0140100 Rorug05G0553000 Rorug05G0553100 Rorug05G0553200
rosa_samantha	Rh2AG190900 Rh2BG202600 Rh2CG195800 Rh2DG198100 Rh6AG070100 Rh6BG062600 Rh6CG062500 Rh6DG059500
rosa_wichuraiana	Rw2G015060 Rw6G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	326
AccB1I	GGYRCC	2 cut(s)	159, 326
AccBSI	CCGCTC	2 cut(s)	141, 179
AccII	CGCG	1 cut(s)	301
AciI	CCGC	7 cut(s)	120, 139, 144, 166, 170, 177, 193
AcoI	YGGCCR	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	2 cut(s)	328, 340
AfiI	CCNNNNNNNGG	3 cut(s)	37, 123, 213
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	247
AoxI	GGCC	2 cut(s)	111, 183
ApeKI	GCWGC	4 cut(s)	247, 250, 263, 266
Asp718I	GGTACC	1 cut(s)	326
AspLEI	GCGC	3 cut(s)	84, 162, 301
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	196, 275
AvaII	GGWCC	1 cut(s)	105
BanI	GGYRCC	2 cut(s)	159, 326
BbvI	GCAGC	4 cut(s)	234, 237, 250, 278
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	214
BfaI	CTAG	2 cut(s)	123, 355
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	163
BisI	GCNGC	5 cut(s)	193, 248, 251, 264, 267
BlsI	GCNGC	5 cut(s)	194, 249, 252, 265, 268
Bme1390I	CCNGG	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	161, 328
BmrFI	CCNGG	1 cut(s)	214
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	108, 212, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 123, 213
Bse1I	ACTGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	3 cut(s)	108, 212, 322
BseGI	GGATG	1 cut(s)	239
BseLI	CCNNNNNNNGG	3 cut(s)	37, 123, 213
BseNI	ACTGG	1 cut(s)	234
BseXI	GCAGC	4 cut(s)	234, 237, 250, 278
Bsh1236I	CGCG	1 cut(s)	301
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	113, 185
BshNI	GGYRCC	2 cut(s)	159, 326
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	157, 182
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	37, 123, 213
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	113, 185
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	7 cut(s)	120, 139, 144, 166, 170, 177, 193
BspANI	GGCC	2 cut(s)	113, 185
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	161, 328
BspMAI	CTGCAG	1 cut(s)	268
BspT107I	GGYRCC	2 cut(s)	159, 326
BsrBI	CCGCTC	2 cut(s)	141, 179
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	3 cut(s)	108, 212, 322
BssMI	GATC	1 cut(s)	349
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	4 cut(s)	58, 243, 292, 326
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	4 cut(s)	170, 261, 271, 303
BstDSI	CCRYGG	1 cut(s)	322
BstENI	CCTNNNNNAGG	2 cut(s)	35, 211
BstF5I	GGATG	1 cut(s)	239
BstFNI	CGCG	1 cut(s)	301
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	3 cut(s)	84, 162, 301
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 256
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	4 cut(s)	234, 237, 250, 278
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	113, 185
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	4 cut(s)	170, 261, 271, 303
CaiI	CAGNNNCTG	1 cut(s)	247
CfoI	GCGC	3 cut(s)	84, 162, 301
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	327, 339
CviAII	CATG	1 cut(s)	270
CviJI	RGCY	6 cut(s)	41, 47, 77, 113, 185, 263
CviKI_1	RGCY	6 cut(s)	41, 47, 77, 113, 185, 263
CviQI	GTAC	2 cut(s)	327, 339
DinI	GGCGCC	1 cut(s)	161
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	183
EciI	GGCGGA	2 cut(s)	133, 155
Eco130I	CCWWGG	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	105
EcoNI	CCTNNNNNAGG	2 cut(s)	35, 211
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	161
EheI	GGCGCC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	273
FaiI	YATR	3 cut(s)	255, 257, 271
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	1 cut(s)	269
FauI	CCCGC	1 cut(s)	177
FauNDI	CATATG	1 cut(s)	255
Fnu4HI	GCNGC	5 cut(s)	193, 248, 251, 264, 267
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	5 cut(s)	193, 248, 251, 264, 267
FspBI	CTAG	2 cut(s)	123, 355
GlaI	GCGC	3 cut(s)	83, 161, 300
GluI	GCNGC	5 cut(s)	193, 248, 251, 264, 267
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	113, 185
HapII	CCGG	2 cut(s)	157, 182
HhaI	GCGC	3 cut(s)	84, 162, 301
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	273
Hin6I	GCGC	3 cut(s)	82, 160, 299
HinP1I	GCGC	3 cut(s)	82, 160, 299
HpaII	CCGG	2 cut(s)	157, 182
HphI	GGTGA	2 cut(s)	196, 275
Hpy188III	TCNNGA	1 cut(s)	347
HpyAV	CCTTC	2 cut(s)	211, 340
HpyCH4III	ACNGT	4 cut(s)	58, 243, 292, 326
HpyCH4V	TGCA	3 cut(s)	237, 253, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 256
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	273
HspAI	GCGC	3 cut(s)	82, 160, 299
KasI	GGCGCC	1 cut(s)	159
KpnI	GGTACC	1 cut(s)	330
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	3 cut(s)	138, 146, 184
LpnPI	CCDG	8 cut(s)	75, 170, 195, 199, 215, 226, 299, 332
Lsp1109I	GCAGC	4 cut(s)	234, 237, 250, 278
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	123, 355
MalI	GATC	1 cut(s)	351
MbiI	CCGCTC	2 cut(s)	141, 179
MboI	GATC	1 cut(s)	349
Mly113I	GGCGCC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	41, 124, 173, 217, 284
MspI	CCGG	2 cut(s)	157, 182
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	119, 256
NarI	GGCGCC	1 cut(s)	160
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	273
NlaIV	GGNNCC	2 cut(s)	161, 328
NspI	RCATGY	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	273
PkrI	GCNGC	5 cut(s)	194, 249, 252, 265, 268
PluTI	GGCGCC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	161, 328
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	328, 340
RsaNI	GTAC	2 cut(s)	327, 339
SatI	GCNGC	5 cut(s)	193, 248, 251, 264, 267
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	5 cut(s)	21, 209, 265, 288, 332
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	264
SfoI	GGCGCC	1 cut(s)	161
SinI	GGWCC	1 cut(s)	105
SphI	GCATGC	1 cut(s)	273
SsiI	CCGC	7 cut(s)	120, 139, 144, 166, 170, 177, 193
SspDI	GGCGCC	1 cut(s)	159
SspMI	CTAG	2 cut(s)	123, 355
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	4 cut(s)	58, 243, 292, 326
TaqII	GACCGA	1 cut(s)	93
TauI	GCSGC	1 cut(s)	195
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	4 cut(s)	247, 250, 263, 266
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	105
XagI	CCTNNNNNAGG	2 cut(s)	35, 211
XceI	RCATGY	1 cut(s)	273
XspI	CTAG	2 cut(s)	123, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.