Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001279

Physical Location & Seq

Genomic Coordinates Forward (+)

16113206 .. 16117818

Gene Structure 4613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1099700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCTTGGCGCTCAGCTGGTTCGCTTTCTCGGTCATTGGTGTCCACCGCTAGGGTTTCGTCGCTTCGCTTGGCGCCCCCTCTCCGTCGCCTCCGCCCGCCGTCTCTCTCTACTCCTCGTCGCCTCTTCGCTTCTCCCAGGAACATGGGAGAGCTGGGATGCATACAATCGCTTCTGCCAATGCACAACGTGACGGCTGCAACCTGCCTCACATCTCACCTGGCTGCCAATGCGCGGGGGTGTTGCGAGTTGTCACACGGGAGGAATGGAAAAGATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

9.95

Weight (kDa)

11.7

Isoelectric Point (pI)

69.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265
fragaria_vesca	FvH4_1g16960 FvH4_1g16960 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800
malus_domestica	MD02G1179900.v1.1 MD10G1099700.v1.1
prunus_persica	Prupe.6G226300_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1
pyrus_communis	pycom02g14580 pycom05g09150 pycom10g08580
rosa_chinensis	RchiOBHm_Chr2g0107061 RchiOBHm_Chr6g0254531
rosa_multiflora	Rmu_sc0002116.1_g000003 Rmu_sc0004298.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136650 Rroxscaffold_7G00210700
rosa_rugosa	Rorug02G0140100 Rorug02G0140100 Rorug05G0553000 Rorug05G0553100 Rorug05G0553200
rosa_samantha	Rh2AG190900 Rh2BG202600 Rh2CG195800 Rh2DG198100 Rh6AG070100 Rh6BG062600 Rh6CG062500 Rh6DG059500
rosa_wichuraiana	Rw2G015060 Rw6G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	73
AccII	CGCG	1 cut(s)	235
AciI	CCGC	4 cut(s)	48, 94, 98, 235
AcyI	GRCGYC	1 cut(s)	74
AdeI	CACNNNGTG	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	51, 234
AjnI	CCWGG	2 cut(s)	137, 219
AluBI	AGCT	2 cut(s)	17, 154
AluI	AGCT	2 cut(s)	17, 154
Alw26I	GTCTC	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	197, 224
AspLEI	GCGC	3 cut(s)	12, 76, 235
AsuHPI	GGTGA	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	184, 211
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	2 cut(s)	85, 210
BciT130I	CCWGG	2 cut(s)	139, 221
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	51
BfoI	RGCGCY	2 cut(s)	13, 77
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	2 cut(s)	198, 225
BlpI	GCTNAGC	1 cut(s)	13
BlsI	GCNGC	2 cut(s)	199, 226
Bme1390I	CCNGG	2 cut(s)	139, 221
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	139, 221
BmsI	GCATC	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 234
BseBI	CCWGG	2 cut(s)	139, 221
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	51, 234
BseMII	CTCAG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	184, 211
BseYI	CCCAGC	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	51, 234
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
Bsp1720I	GCTNAGC	1 cut(s)	13
BspACI	CCGC	4 cut(s)	48, 94, 98, 235
BspCNI	CTCAG	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	137
BssNI	GRCGYC	1 cut(s)	74
Bst2UI	CCWGG	2 cut(s)	139, 221
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	235
BstH2I	RGCGCY	2 cut(s)	13, 77
BstHHI	GCGC	3 cut(s)	12, 76, 235
BstMAI	GTCTC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	2 cut(s)	139, 221
BstSCI	CCNGG	2 cut(s)	137, 219
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	184, 211
BstXI	CCANNNNNNTGG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	164
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	98
CfoI	GCGC	3 cut(s)	12, 76, 235
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	5 cut(s)	5, 17, 154, 197, 224
CviKI_1	RGCY	5 cut(s)	5, 17, 154, 197, 224
DdeI	CTNAG	1 cut(s)	13
DinI	GGCGCC	1 cut(s)	75
DraIII	CACNNNGTG	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	137, 219
EcoT22I	ATGCAT	1 cut(s)	164
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	146, 164
FatI	CATG	1 cut(s)	144
FauI	CCCGC	2 cut(s)	105, 228
Fnu4HI	GCNGC	2 cut(s)	198, 225
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	198, 225
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	3 cut(s)	11, 75, 234
GluI	GCNGC	2 cut(s)	198, 225
GsaI	CCCAGC	1 cut(s)	158
HaeII	RGCGCY	2 cut(s)	13, 77
HhaI	GCGC	3 cut(s)	12, 76, 235
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	3 cut(s)	10, 74, 233
HinP1I	GCGC	3 cut(s)	10, 74, 233
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	45
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	3 cut(s)	64, 90, 123
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	3 cut(s)	162, 184, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	3 cut(s)	10, 74, 233
KasI	GGCGCC	1 cut(s)	73
LpnPI	CCDG	7 cut(s)	3, 124, 140, 151, 206, 217, 233
Lsp1109I	GCAGC	2 cut(s)	184, 211
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	190, 252
MboII	GAAGA	1 cut(s)	118
Mly113I	GGCGCC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	90, 101, 126, 134, 218, 255
Mph1103I	ATGCAT	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	139, 221
MvaI	CCWGG	2 cut(s)	139, 221
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	230
NarI	GGCGCC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	190, 252
NsiI	ATGCAT	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	199, 226
PluTI	GGCGCC	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	137, 219
PspFI	CCCAGC	1 cut(s)	154
PspGI	CCWGG	2 cut(s)	137, 219
PspN4I	GGNNCC	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	17
SatI	GCNGC	2 cut(s)	198, 225
ScrFI	CCNGG	2 cut(s)	139, 221
SetI	ASST	5 cut(s)	19, 156, 192, 206, 222
SfaNI	GCATC	1 cut(s)	149
SfoI	GGCGCC	1 cut(s)	75
SsiI	CCGC	4 cut(s)	48, 94, 98, 235
SspDI	GGCGCC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	137, 219
TaiI	ACGT	1 cut(s)	192
TaqII	GACCGA	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	190, 252
TseI	GCWGC	2 cut(s)	197, 224
Tsp45I	GTSAC	2 cut(s)	190, 252
TspGWI	ACGGA	1 cut(s)	74
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.