Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001279

Physical Location & Seq

Genomic Coordinates Reverse (-)

3723468 .. 3726961

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04800.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCTTTGCGCTCTGCTGGTTCGCTCTCTCGGTCCTTGGCCTCCGCCGCTAGGGTTTCGCTCCACCGCTCCGCCCCAACTCTCCGGCGCCTCCGCCCGCCCACTGCTCCCGCCGCTCGCCGCTTCTCCTTCACCTCTCCCAGGAACCTGGGAGAACTGGGATGCGCACAGTCGCTGCTGCCAATGCGAACTGCAACATGCCTCACATCTCACCTGACTGTCAATATGCGTGCTTGTTGCGAGCTGTCTCACGGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.21

Weight (kDa)

11.85

Isoelectric Point (pI)

74.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265
fragaria_vesca	FvH4_1g16960 FvH4_1g16960 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800
malus_domestica	MD02G1179900.v1.1 MD10G1099700.v1.1
prunus_persica	Prupe.6G226300_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1
pyrus_communis	pycom02g14580 pycom05g09150 pycom10g08580
rosa_chinensis	RchiOBHm_Chr2g0107061 RchiOBHm_Chr6g0254531
rosa_multiflora	Rmu_sc0002116.1_g000003 Rmu_sc0004298.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136650 Rroxscaffold_7G00210700
rosa_rugosa	Rorug02G0140100 Rorug02G0140100 Rorug05G0553000 Rorug05G0553100 Rorug05G0553200
rosa_samantha	Rh2AG190900 Rh2BG202600 Rh2CG195800 Rh2DG198100 Rh6AG070100 Rh6BG062600 Rh6CG062500 Rh6DG059500
rosa_wichuraiana	Rw2G015060 Rw6G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	166
AccB1I	GGYRCC	1 cut(s)	87
AccBSI	CCGCTC	2 cut(s)	69, 116
AciI	CCGC	9 cut(s)	45, 48, 67, 72, 94, 98, 111, 114, 121
AcyI	GRCGYC	1 cut(s)	88
AfiI	CCNNNNNNNGG	2 cut(s)	51, 141
AjnI	CCWGG	2 cut(s)	140, 147
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	252
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	175, 178
AspLEI	GCGC	3 cut(s)	12, 90, 167
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	124, 203
AvaII	GGWCC	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	162, 165
BciT130I	CCWGG	2 cut(s)	142, 149
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	91
BisI	GCNGC	5 cut(s)	48, 114, 121, 176, 179
BlsI	GCNGC	5 cut(s)	49, 115, 122, 177, 180
Bme1390I	CCNGG	2 cut(s)	142, 149
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	89, 146
BmrFI	CCNGG	2 cut(s)	142, 149
BmrI	ACTGGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	88
BsaJI	CCNNGG	3 cut(s)	36, 140, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 141
Bse1I	ACTGG	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	142, 149
BseDI	CCNNGG	3 cut(s)	36, 140, 148
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	51, 141
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	162, 165
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	51, 141
BsmAI	GTCTC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	41
BspACI	CCGC	9 cut(s)	45, 48, 67, 72, 94, 98, 111, 114, 121
BspANI	GGCC	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	89, 146
BspT107I	GGYRCC	1 cut(s)	87
BsrBI	CCGCTC	2 cut(s)	69, 116
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	3 cut(s)	36, 140, 148
BssNI	GRCGYC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	142, 149
Bst4CI	ACNGT	2 cut(s)	171, 220
BstACI	GRCGYC	1 cut(s)	88
BstC8I	GCNNGC	4 cut(s)	98, 118, 231, 242
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	3 cut(s)	12, 90, 167
BstMAI	GTCTC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 113, 184
BstNI	CCWGG	2 cut(s)	142, 149
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	140, 147
BstV1I	GCAGC	2 cut(s)	162, 165
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	4 cut(s)	98, 118, 231, 242
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	3 cut(s)	12, 90, 167
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	3 cut(s)	5, 41, 244
CviKI_1	RGCY	3 cut(s)	5, 41, 244
DinI	GGCGCC	1 cut(s)	89
EciI	GGCGGA	3 cut(s)	34, 61, 83
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	140, 147
EcoT14I	CCWWGG	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	89
EheI	GGCGCC	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	201
FaiI	YATR	2 cut(s)	199, 227
FatI	CATG	1 cut(s)	197
FauI	CCCGC	2 cut(s)	105, 118
Fnu4HI	GCNGC	5 cut(s)	48, 114, 121, 176, 179
FokI	GGATG	1 cut(s)	174
Fsp4HI	GCNGC	5 cut(s)	48, 114, 121, 176, 179
FspAI	RTGCGCAY	1 cut(s)	166
FspBI	CTAG	1 cut(s)	51
FspI	TGCGCA	1 cut(s)	166
GlaI	GCGC	3 cut(s)	11, 89, 166
GluI	GCNGC	5 cut(s)	48, 114, 121, 176, 179
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	85
HhaI	GCGC	3 cut(s)	12, 90, 167
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	201
Hin6I	GCGC	3 cut(s)	10, 88, 165
HinP1I	GCGC	3 cut(s)	10, 88, 165
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	2 cut(s)	124, 203
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	171, 220
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 113, 184
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	201
HspAI	GCGC	3 cut(s)	10, 88, 165
KasI	GGCGCC	1 cut(s)	87
LmnI	GCTCC	3 cut(s)	66, 74, 112
LpnPI	CCDG	8 cut(s)	3, 98, 127, 134, 143, 154, 161, 227
Lsp1109I	GCAGC	2 cut(s)	162, 165
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	51
MbiI	CCGCTC	2 cut(s)	69, 116
Mly113I	GGCGCC	1 cut(s)	88
MnlI	CCTC	4 cut(s)	52, 101, 145, 212
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	142, 149
MvaI	CCWGG	2 cut(s)	142, 149
MwoI	GCNNNNNNNGC	3 cut(s)	47, 113, 184
NarI	GGCGCC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	2 cut(s)	89, 146
NsbI	TGCGCA	1 cut(s)	166
NspI	RCATGY	1 cut(s)	201
PkrI	GCNGC	5 cut(s)	49, 115, 122, 177, 180
PluTI	GGCGCC	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	140, 147
PspGI	CCWGG	2 cut(s)	140, 147
PspN4I	GGNNCC	2 cut(s)	89, 146
PspPI	GGNCC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	175
SatI	GCNGC	5 cut(s)	48, 114, 121, 176, 179
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	142, 149
SetI	ASST	4 cut(s)	137, 150, 216, 246
SfaNI	GCATC	1 cut(s)	152
SfoI	GGCGCC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	33
SsiI	CCGC	9 cut(s)	45, 48, 67, 72, 94, 98, 111, 114, 121
SspDI	GGCGCC	1 cut(s)	87
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	140, 147
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	171, 220
TaqII	GACCGA	1 cut(s)	21
TauI	GCSGC	3 cut(s)	50, 116, 123
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	2 cut(s)	175, 178
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	33
XagI	CCTNNNNNAGG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	201
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.