Rw2G015060

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001279
Physical Location & Seq
Forward (+)
17367363 .. 17368272
910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G015060.1

Sequence Viewer

Length: 240 bp
ATGGCTTGGCGCGGTGGATCGTCCCTGTCGAGATCTCTGATCTCCGCCGCAAGAACCTCTACCGTCCGATCACCTCCGTCGATCTCATCCCTCCCTCGCTCTCCTCCGCTCCGTAATATGGCCTCCCTGGCCTGCGCTCAGTCGCTGCTGCCGTTCCACAGCGCCGTCGCCTCCGTTCGTATGACCAGTCACATCTCCGGCGAAGTGCGCGCTTTCTGCGAGTTGTCTCAGGGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.31

Weight (kDa)

11.78

Isoelectric Point (pI)

83.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 109
AccII CGCG 2 cut(s) 12, 210
AciI CCGC 4 cut(s) 12, 45, 48, 107
AclWI GGATC 1 cut(s) 25
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 118
AjnI CCWGG 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 25
AlwNI CAGNNNCTG 1 cut(s) 145
AoxI GGCC 2 cut(s) 120, 129
ApeKI GCWGC 2 cut(s) 145, 148
AspLEI GCGC 5 cut(s) 12, 137, 164, 210, 212
AsuHPI GGTGA 1 cut(s) 63
BbvI GCAGC 2 cut(s) 132, 135
BceAI ACGGC 2 cut(s) 136, 149
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 165
BglI GCCNNNNNGGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 32
BisI GCNGC 3 cut(s) 48, 146, 149
BlsI GCNGC 3 cut(s) 49, 147, 150
Bme1390I CCNGG 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 186
BsePI GCGCGC 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 132, 135
Bsh1236I CGCG 2 cut(s) 12, 210
BshFI GGCC 2 cut(s) 122, 131
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 7
BsnI GGCC 2 cut(s) 122, 131
Bsp143I GATC 5 cut(s) 17, 32, 39, 68, 81
BspACI CCGC 4 cut(s) 12, 45, 48, 107
BspANI GGCC 2 cut(s) 122, 131
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 2 cut(s) 12, 210
BspPI GGATC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 126
BssHII GCGCGC 1 cut(s) 208
BssMI GATC 5 cut(s) 17, 32, 39, 68, 81
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 64
BstC8I GCNNGC 2 cut(s) 133, 210
BstDEI CTNAG 2 cut(s) 138, 228
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 12, 210
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 5 cut(s) 12, 137, 164, 210, 212
BstKTI GATC 5 cut(s) 20, 35, 42, 71, 84
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 5 cut(s) 17, 32, 39, 68, 81
BstMWI GCNNNNNNNGC 3 cut(s) 128, 207, 216
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstUI CGCG 2 cut(s) 12, 210
BstV1I GCAGC 2 cut(s) 132, 135
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 2 cut(s) 122, 131
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 133, 210
CaiI CAGNNNCTG 1 cut(s) 145
CfoI GCGC 5 cut(s) 12, 137, 164, 210, 212
Csp6I GTAC 1 cut(s) 234
CviJI RGCY 3 cut(s) 5, 122, 131
CviKI_1 RGCY 3 cut(s) 5, 122, 131
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 2 cut(s) 138, 228
DpnI GATC 5 cut(s) 19, 34, 41, 70, 83
DpnII GATC 5 cut(s) 17, 32, 39, 68, 81
EciI GGCGGA 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 126
FaiI YATR 2 cut(s) 119, 182
FaqI GGGAC 1 cut(s) 7
Fnu4HI GCNGC 3 cut(s) 48, 146, 149
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 3 cut(s) 48, 146, 149
GlaI GCGC 5 cut(s) 11, 136, 163, 209, 211
GluI GCNGC 3 cut(s) 48, 146, 149
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 2 cut(s) 122, 131
HapII CCGG 1 cut(s) 198
HhaI GCGC 5 cut(s) 12, 137, 164, 210, 212
Hin6I GCGC 5 cut(s) 10, 135, 162, 208, 210
HinP1I GCGC 5 cut(s) 10, 135, 162, 208, 210
HpaII CCGG 1 cut(s) 198
HphI GGTGA 1 cut(s) 63
Hpy188I TCNGA 2 cut(s) 39, 68
Hpy188III TCNNGA 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 82, 170
HpyCH4III ACNGT 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 207, 216
HpyF3I CTNAG 2 cut(s) 138, 228
HspAI GCGC 5 cut(s) 10, 135, 162, 208, 210
Kzo9I GATC 5 cut(s) 17, 32, 39, 68, 81
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 7 cut(s) 38, 113, 140, 145, 199, 211, 215
Lsp1109I GCAGC 2 cut(s) 132, 135
MaeIII GTNAC 1 cut(s) 188
MalI GATC 5 cut(s) 19, 34, 41, 70, 83
MbiI CCGCTC 1 cut(s) 109
MboI GATC 5 cut(s) 17, 32, 39, 68, 81
MflI RGATCY 1 cut(s) 32
MnlI CCTC 7 cut(s) 67, 84, 101, 105, 114, 133, 181
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 2 cut(s) 12, 210
MwoI GCNNNNNNNGC 3 cut(s) 128, 207, 216
NdeII GATC 5 cut(s) 17, 32, 39, 68, 81
NmuCI GTSAC 1 cut(s) 188
PauI GCGCGC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 149
PkrI GCNGC 3 cut(s) 49, 147, 150
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 32
PteI GCGCGC 1 cut(s) 208
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SatI GCNGC 3 cut(s) 48, 146, 149
Sau3AI GATC 5 cut(s) 17, 32, 39, 68, 81
ScrFI CCNGG 1 cut(s) 128
SetI ASST 2 cut(s) 59, 76
SfiI GGCCNNNNNGGCC 1 cut(s) 128
SsiI CCGC 4 cut(s) 12, 45, 48, 107
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 29, 80
TauI GCSGC 1 cut(s) 50
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 2 cut(s) 145, 148
Tsp45I GTSAC 1 cut(s) 188
TspGWI ACGGA 3 cut(s) 66, 101, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.