Rmu_sc0002116.1_g000003

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002116.1
OG0001279
Physical Location & Seq
Forward (+)
8593 .. 9503
911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002116.1_g000003.1.cds

Sequence Viewer

Length: 285 bp
atggcttggcgcggtggatcgtccctgtcgagatctctgatctccgccgcaagaacctctaccgtccgatcacctccgtcgatctcatccctccctcgctctcctccgctccgtaatatggcctccgccactcgccggactctcttctctctccccgccaatgtgggacagctggcctgcgctcagtcgctgctgccgttccacagcgccgtcgcctccgttcgtatgaccagtcacatctccggcgaagtgcgcgctttctgcgagttgtctcagggtacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.93

Weight (kDa)

12.0

Isoelectric Point (pI)

80.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 109
AccII CGCG 2 cut(s) 12, 255
AciI CCGC 6 cut(s) 12, 45, 48, 107, 126, 156
AclWI GGATC 1 cut(s) 25
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 118, 135
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 1 cut(s) 25
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 2 cut(s) 120, 174
ApeKI GCWGC 2 cut(s) 190, 193
AspLEI GCGC 5 cut(s) 12, 182, 209, 255, 257
AsuHPI GGTGA 1 cut(s) 63
BbvI GCAGC 2 cut(s) 177, 180
BceAI ACGGC 2 cut(s) 181, 194
BcoDI GTCTC 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 210
BglII AGATCT 1 cut(s) 32
BisI GCNGC 3 cut(s) 48, 191, 194
BlsI GCNGC 3 cut(s) 49, 192, 195
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 135
Bse1I ACTGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 118, 135
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 231
BsePI GCGCGC 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 177, 180
Bsh1236I CGCG 2 cut(s) 12, 255
BshFI GGCC 2 cut(s) 122, 176
BsiSI CCGG 2 cut(s) 136, 243
BslFI GGGAC 2 cut(s) 7, 180
BslI CCNNNNNNNGG 2 cut(s) 118, 135
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 2 cut(s) 7, 180
BsnI GGCC 2 cut(s) 122, 176
Bsp143I GATC 5 cut(s) 17, 32, 39, 68, 81
BspACI CCGC 6 cut(s) 12, 45, 48, 107, 126, 156
BspANI GGCC 2 cut(s) 122, 176
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 2 cut(s) 12, 255
BspPI GGATC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 231
BssHII GCGCGC 1 cut(s) 253
BssMI GATC 5 cut(s) 17, 32, 39, 68, 81
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 174, 178, 255
BstDEI CTNAG 2 cut(s) 183, 273
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 12, 255
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 5 cut(s) 12, 182, 209, 255, 257
BstKTI GATC 5 cut(s) 20, 35, 42, 71, 84
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 5 cut(s) 17, 32, 39, 68, 81
BstMWI GCNNNNNNNGC 2 cut(s) 252, 261
BstUI CGCG 2 cut(s) 12, 255
BstV1I GCAGC 2 cut(s) 177, 180
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 2 cut(s) 122, 176
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 3 cut(s) 174, 178, 255
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 5 cut(s) 12, 182, 209, 255, 257
Csp6I GTAC 1 cut(s) 279
CviJI RGCY 4 cut(s) 5, 122, 172, 176
CviKI_1 RGCY 4 cut(s) 5, 122, 172, 176
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 2 cut(s) 183, 273
DpnI GATC 5 cut(s) 19, 34, 41, 70, 83
DpnII GATC 5 cut(s) 17, 32, 39, 68, 81
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 2 cut(s) 34, 115
FaiI YATR 2 cut(s) 119, 227
FaqI GGGAC 2 cut(s) 7, 180
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 48, 191, 194
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 3 cut(s) 48, 191, 194
GlaI GCGC 5 cut(s) 11, 181, 208, 254, 256
GluI GCNGC 3 cut(s) 48, 191, 194
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 2 cut(s) 122, 176
HapII CCGG 2 cut(s) 136, 243
HhaI GCGC 5 cut(s) 12, 182, 209, 255, 257
Hin6I GCGC 5 cut(s) 10, 180, 207, 253, 255
HinP1I GCGC 5 cut(s) 10, 180, 207, 253, 255
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 136, 243
HphI GGTGA 1 cut(s) 63
Hpy188I TCNGA 2 cut(s) 39, 68
Hpy188III TCNNGA 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 82, 215
HpyCH4III ACNGT 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 261
HpyF3I CTNAG 2 cut(s) 183, 273
HspAI GCGC 5 cut(s) 10, 180, 207, 253, 255
Kzo9I GATC 5 cut(s) 17, 32, 39, 68, 81
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 7 cut(s) 38, 149, 158, 190, 244, 256, 260
Lsp1109I GCAGC 2 cut(s) 177, 180
MaeIII GTNAC 1 cut(s) 233
MalI GATC 5 cut(s) 19, 34, 41, 70, 83
MbiI CCGCTC 1 cut(s) 109
MboI GATC 5 cut(s) 17, 32, 39, 68, 81
MboII GAAGA 1 cut(s) 136
MflI RGATCY 1 cut(s) 32
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 7 cut(s) 67, 84, 101, 105, 114, 133, 226
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 2 cut(s) 136, 243
MvnI CGCG 2 cut(s) 12, 255
MwoI GCNNNNNNNGC 2 cut(s) 252, 261
NdeII GATC 5 cut(s) 17, 32, 39, 68, 81
NmuCI GTSAC 1 cut(s) 233
PauI GCGCGC 1 cut(s) 253
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 194
PkrI GCNGC 3 cut(s) 49, 192, 195
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 32
PteI GCGCGC 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SatI GCNGC 3 cut(s) 48, 191, 194
Sau3AI GATC 5 cut(s) 17, 32, 39, 68, 81
SchI GAGTC 1 cut(s) 133
SetI ASST 3 cut(s) 59, 76, 174
SsiI CCGC 6 cut(s) 12, 45, 48, 107, 126, 156
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 29, 80
TauI GCSGC 1 cut(s) 50
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 190, 193
Tsp45I GTSAC 1 cut(s) 233
TspGWI ACGGA 3 cut(s) 66, 101, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.