Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001279

Physical Location & Seq

Genomic Coordinates Forward (+)

15992987 .. 15994380

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1179900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGTGGCGATCTGGGTCGTCGTTGTCAAGGTCTCTGATCTCAACGGCAAGAGCTTCGACATTCCGGTCGTCTCCATCGATCTCATCTCTCCCTCGCGCTCCGCTTCGTAATCTCATCGGCAGCAGCTCCCGCCGCAACCTCTTCTCCCTCCCAGTCAATGTGGGCCAATTAGCTTGCGCGCAGTCGCTGATGCCATTGCACAGCGCCCTGGCTTCGGCTCGTCTCACAAGCCACATCTCCGTCGAAGCGCGGCATTGCTGCGAGCTGTCTCAGGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

9.98

Weight (kDa)

11.82

Isoelectric Point (pI)

87.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT2G15000 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265 AT4G34265
fragaria_vesca	FvH4_1g16960 FvH4_1g16960 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800 FvH4_2g04800
malus_domestica	MD02G1179900.v1.1 MD10G1099700.v1.1
prunus_persica	Prupe.6G226300_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1 Prupe.8G137400_v2.0.a1
pyrus_communis	pycom02g14580 pycom05g09150 pycom10g08580
rosa_chinensis	RchiOBHm_Chr2g0107061 RchiOBHm_Chr6g0254531
rosa_multiflora	Rmu_sc0002116.1_g000003 Rmu_sc0004298.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136650 Rroxscaffold_7G00210700
rosa_rugosa	Rorug02G0140100 Rorug02G0140100 Rorug05G0553000 Rorug05G0553100 Rorug05G0553200
rosa_samantha	Rh2AG190900 Rh2BG202600 Rh2CG195800 Rh2DG198100 Rh6AG070100 Rh6BG062600 Rh6CG062500 Rh6DG059500
rosa_wichuraiana	Rw2G015060 Rw6G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	67
AccII	CGCG	3 cut(s)	99, 182, 253
AciI	CCGC	4 cut(s)	104, 133, 136, 253
AfiI	CCNNNNNNNGG	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	4 cut(s)	56, 129, 176, 268
AluI	AGCT	4 cut(s)	56, 129, 176, 268
Alw26I	GTCTC	4 cut(s)	39, 78, 230, 276
AlwNI	CAGNNNCTG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	3 cut(s)	123, 126, 261
AspLEI	GCGC	5 cut(s)	101, 182, 184, 209, 253
AspS9I	GGNCC	1 cut(s)	166
BbvI	GCAGC	3 cut(s)	135, 138, 248
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	39, 73
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	4 cut(s)	39, 78, 230, 276
BfoI	RGCGCY	1 cut(s)	210
BisI	GCNGC	5 cut(s)	124, 127, 136, 254, 262
BlsI	GCNGC	5 cut(s)	125, 128, 137, 255, 263
Bme1390I	CCNGG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	2 cut(s)	197, 256
BseBI	CCWGG	1 cut(s)	212
BseCI	ATCGAT	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	2 cut(s)	197, 256
BseNI	ACTGG	1 cut(s)	155
BsePI	GCGCGC	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	135, 138, 248
Bsh1236I	CGCG	3 cut(s)	99, 182, 253
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	168
BshVI	ATCGAT	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	4 cut(s)	39, 78, 230, 276
BsmBI	CGTCTC	2 cut(s)	78, 230
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	11, 39, 81
BspACI	CCGC	4 cut(s)	104, 133, 136, 253
BspANI	GGCC	1 cut(s)	168
BspDI	ATCGAT	1 cut(s)	80
BspFNI	CGCG	3 cut(s)	99, 182, 253
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	197, 256
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	210
BssHII	GCGCGC	1 cut(s)	180
BssMI	GATC	3 cut(s)	11, 39, 81
Bst2UI	CCWGG	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	178, 182, 266
BstDEI	CTNAG	1 cut(s)	273
BstFNI	CGCG	3 cut(s)	99, 182, 253
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	5 cut(s)	101, 182, 184, 209, 253
BstKTI	GATC	3 cut(s)	14, 42, 84
BstMAI	GTCTC	4 cut(s)	39, 78, 230, 276
BstMBI	GATC	3 cut(s)	11, 39, 81
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 135
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstUI	CGCG	3 cut(s)	99, 182, 253
BstV1I	GCAGC	3 cut(s)	135, 138, 248
Bsu15I	ATCGAT	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	168
BsuTUI	ATCGAT	1 cut(s)	80
Cac8I	GCNNGC	3 cut(s)	178, 182, 266
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	5 cut(s)	101, 182, 184, 209, 253
Cfr13I	GGNCC	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	80
CviJI	RGCY	8 cut(s)	56, 129, 168, 176, 215, 221, 234, 268
CviKI_1	RGCY	8 cut(s)	56, 129, 168, 176, 215, 221, 234, 268
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	3 cut(s)	13, 41, 83
DpnII	GATC	3 cut(s)	11, 39, 81
DrdI	GACNNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	210
Esp3I	CGTCTC	2 cut(s)	78, 230
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	5 cut(s)	124, 127, 136, 254, 262
Fsp4HI	GCNGC	5 cut(s)	124, 127, 136, 254, 262
GlaI	GCGC	5 cut(s)	100, 181, 183, 208, 252
GluI	GCNGC	5 cut(s)	124, 127, 136, 254, 262
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	67
HhaI	GCGC	5 cut(s)	101, 182, 184, 209, 253
Hin6I	GCGC	5 cut(s)	99, 180, 182, 207, 251
HinP1I	GCGC	5 cut(s)	99, 180, 182, 207, 251
HpaII	CCGG	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	282
Hpy99I	CGWCG	2 cut(s)	25, 248
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 135
HpyF3I	CTNAG	1 cut(s)	273
HspAI	GCGC	5 cut(s)	99, 180, 182, 207, 251
Kzo9I	GATC	3 cut(s)	11, 39, 81
LmnI	GCTCC	2 cut(s)	106, 134
LpnPI	CCDG	5 cut(s)	80, 168, 197, 224, 260
Lsp1109I	GCAGC	3 cut(s)	135, 138, 248
LweI	GCATC	1 cut(s)	183
MalI	GATC	3 cut(s)	13, 41, 83
MboI	GATC	3 cut(s)	11, 39, 81
MboII	GAAGA	1 cut(s)	136
MluCI	AATT	1 cut(s)	170
MnlI	CCTC	3 cut(s)	105, 152, 161
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	3 cut(s)	99, 182, 253
MwoI	GCNNNNNNNGC	2 cut(s)	132, 135
NdeII	GATC	3 cut(s)	11, 39, 81
PauI	GCGCGC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PkrI	GCNGC	5 cut(s)	125, 128, 137, 255, 263
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	190
PteI	GCGCGC	1 cut(s)	180
SatI	GCNGC	5 cut(s)	124, 127, 136, 254, 262
Sau3AI	GATC	3 cut(s)	11, 39, 81
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	6 cut(s)	35, 58, 131, 144, 178, 270
SfaNI	GCATC	1 cut(s)	183
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	4 cut(s)	104, 133, 136, 253
StyD4I	CCNGG	1 cut(s)	210
TaqI	TCGA	3 cut(s)	59, 80, 246
TasI	AATT	1 cut(s)	170
TauI	GCSGC	2 cut(s)	138, 256
TseI	GCWGC	3 cut(s)	123, 126, 261
TspGWI	ACGGA	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.