Rh2BG202600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001279
Physical Location & Seq
Forward (+)
18722483 .. 18727502
5020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG202600.1

Sequence Viewer

Length: 264 bp
ATGGCCTCCGCCACTCGCCGGACTCTCTTCTCTCTCCCCGCCAATGTGGGACAGCTGGCCTGCGCTCAGTCGCTGCTGCCGTTCCACAGCGCCGTCGCCTCCGTTCGTATGACCAGTCACATCTCCGGCGAAGTGCGCGCTTTCTGCGAGTTGTCTCAGGGTACCTCCATTGATCCCTCTCATATTAAAATGAAACCTTTATCAGAAGTTCAGAACAGCAAGATTCTGATATCTGAGAATAAGCACGATAATATTCATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.44

Weight (kDa)

8.81

Isoelectric Point (pI)

64.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 161
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 9, 39
AclWI GGATC 1 cut(s) 167
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 18
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 73
AoxI GGCC 2 cut(s) 3, 57
ApeKI GCWGC 2 cut(s) 73, 76
Asp718I GGTACC 1 cut(s) 161
AspLEI GCGC 4 cut(s) 65, 92, 138, 140
BanI GGYRCC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 60, 63
BceAI ACGGC 2 cut(s) 64, 77
BcoDI GTCTC 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 93
BisI GCNGC 2 cut(s) 74, 77
BlsI GCNGC 2 cut(s) 75, 78
BmiI GGNNCC 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 3 cut(s) 80, 170, 225
BseNI ACTGG 1 cut(s) 114
BsePI GCGCGC 1 cut(s) 136
BseXI GCAGC 2 cut(s) 60, 63
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 5, 59
BshNI GGYRCC 1 cut(s) 161
BsiSI CCGG 2 cut(s) 19, 126
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 2 cut(s) 5, 59
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 2 cut(s) 9, 39
BspANI GGCC 2 cut(s) 5, 59
BspCNI CTCAG 3 cut(s) 79, 169, 226
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 161
BsrI ACTGG 1 cut(s) 114
BssHII GCGCGC 1 cut(s) 136
BssMI GATC 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 3 cut(s) 57, 61, 138
BstDEI CTNAG 3 cut(s) 66, 156, 234
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 4 cut(s) 65, 92, 138, 140
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 135, 144
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 60, 63
BsuRI GGCC 2 cut(s) 5, 59
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 3 cut(s) 57, 61, 138
CaiI CAGNNNCTG 1 cut(s) 73
CfoI GCGC 4 cut(s) 65, 92, 138, 140
Csp6I GTAC 1 cut(s) 162
CviJI RGCY 3 cut(s) 5, 55, 59
CviKI_1 RGCY 3 cut(s) 5, 55, 59
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 3 cut(s) 66, 156, 234
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco32I GATATC 1 cut(s) 231
EcoRV GATATC 1 cut(s) 231
FaiI YATR 3 cut(s) 110, 183, 262
FaqI GGGAC 1 cut(s) 63
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 74, 77
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 74, 77
GlaI GCGC 4 cut(s) 64, 91, 137, 139
GluI GCNGC 2 cut(s) 74, 77
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 5, 59
HapII CCGG 2 cut(s) 19, 126
HhaI GCGC 4 cut(s) 65, 92, 138, 140
Hin6I GCGC 4 cut(s) 63, 90, 136, 138
HinP1I GCGC 4 cut(s) 63, 90, 136, 138
HinfI GANTC 2 cut(s) 22, 223
HpaII CCGG 2 cut(s) 19, 126
Hpy188I TCNGA 4 cut(s) 205, 213, 228, 235
Hpy99I CGWCG 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 144
HpyF3I CTNAG 3 cut(s) 66, 156, 234
HspAI GCGC 4 cut(s) 63, 90, 136, 138
KpnI GGTACC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 32, 41, 73, 127, 139, 143
Lsp1109I GCAGC 2 cut(s) 60, 63
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 19
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 4 cut(s) 16, 109, 175, 187
MseI TTAA 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 2 cut(s) 19, 126
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 135, 144
NdeII GATC 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 116
PauI GCGCGC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 75, 78
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 73
PteI GCGCGC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 55
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 74, 77
Sau3AI GATC 1 cut(s) 172
SchI GAGTC 1 cut(s) 16
SetI ASST 3 cut(s) 57, 167, 199
SsiI CCGC 2 cut(s) 9, 39
SspI AATATT 1 cut(s) 253
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 73, 76
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 206, 245
TspGWI ACGGA 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.