AT2G20410

ASCH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002815
Physical Location & Seq
Forward (+)
8802091 .. 8804422
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20410.1

Sequence Viewer

Length: 1020 bp
ATGAGTCGTGGGAATTACAAGAACCCGTGCTTGACCATGCATCAGCCATGGGCATCACTTCTCGTCCATGGTATCAAACGCATCGAAGGCAGATCCTGGCCTTCCCCAATTCGAGGCCGTTTATGGATTCATGCTGCAAGTAAAGTACCTGATGAAGCTACTATCAAAGCAATGGAAGAGTTTTACCAACAAATTTATGCTGTTGATGGGATCACTGATATTCAATTCCCCCAACATTACCCTGTTTCAAGACTAATTGGATGTGTTGAGGTTGTTGGATGTGTCACCTCCGATGAGCTTCAGAACTGGGATGCTTTACCTCAAGGGGTGAGGCTTGAAGGACAAACTAACTTTTGTTGGCTATGTGAGAAGCCACAGAAACTGATTATTCCATTTGAGATGCGTGGGTACCAGGGCGTCTATAACTTAGAGAATAAGATTTATGTAGCAGCAGCTAGAGGTCTTATGCCTTCTCAAAACTCTTTTAAGGTGAAATTCCCTCTTCCTGACCCAAAAGACCCGTTTTCCTTAAAACCTGGTTCTATTCCTTGTACAATGCAAGAGAAGAAAGAACTTGATTCAAAGCAAGTTACCAGCCTCACAGCTGCAATCAAGCAAGTTACCAGCCTCACAGCTGCAATCGCCGGTGCAAAAGCAGCGGCGACACAATTTTCTAAGAAGGGACAAAGTCTCCAAACAAATAATATATTTGATTACACAACAAGAAGCAAGAGCAAAGTTATTGAAGATGAAGCAGCAGAATCCCTAGATAACCCGGTTCTTGGTTCTGGTGGAACGTCTGACCGTACTTATAGAACAAGAAGCAAGAACAGAGGCACACAGATGGGTGAAGAAGTATGTAGTGAAAGCAGCAACAGCAGCAGCAAAGTTGAATCTAGTCAAAGAAGTGCAGTCACAAAGAGTGAGGACAGGAATACAAGAATTGGTGAAAGAAGGTTTGATCCTGGATCTGCCCGGATCATGGCCGCTGCAATTAGGAACTTGAAGCCACCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ASCH

Protein Analysis

339

Amino Acids

37.57

Weight (kDa)

9.21

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASCH PF04266 11 - 106 1.2e-09 ASCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 408
AciI CCGC 2 cut(s) 659, 987
AclWI GGATC 5 cut(s) 87, 218, 956, 976, 986
AcoI YGGCCR 1 cut(s) 984
AcsI RAATTY 2 cut(s) 192, 494
AcuI CTGAAG 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 4 cut(s) 147, 410, 553, 808
AfiI CCNNNNNNNGG 3 cut(s) 113, 782, 982
AgsI TTSAA 7 cut(s) 224, 249, 338, 582, 746, 893, 1006
AjnI CCWGG 4 cut(s) 95, 411, 535, 964
AluBI AGCT 5 cut(s) 158, 298, 455, 605, 635
AluI AGCT 5 cut(s) 158, 298, 455, 605, 635
Alw26I GTCTC 1 cut(s) 695
AlwI GGATC 5 cut(s) 87, 218, 956, 976, 986
AlwNI CAGNNNCTG 2 cut(s) 96, 382
AoxI GGCC 3 cut(s) 98, 115, 984
ApoI RAATTY 2 cut(s) 192, 494
Asp718I GGTACC 1 cut(s) 408
AsuC2I CCSGG 2 cut(s) 776, 976
AsuHPI GGTGA 5 cut(s) 277, 340, 502, 860, 959
BanI GGYRCC 1 cut(s) 408
BccI CCATC 2 cut(s) 200, 838
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 4 cut(s) 97, 413, 537, 966
BcnI CCSGG 2 cut(s) 776, 976
BcoDI GTCTC 1 cut(s) 695
BfaI CTAG 3 cut(s) 456, 767, 897
Bme1390I CCNGG 6 cut(s) 97, 413, 537, 776, 966, 976
BmiI GGNNCC 1 cut(s) 410
BmrFI CCNGG 6 cut(s) 97, 413, 537, 776, 966, 976
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 5 cut(s) 49, 62, 90, 301, 390
BmuI ACTGGG 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 306
BpuMI CCSGG 2 cut(s) 776, 976
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 3 cut(s) 47, 67, 412
BsaXI ACNNNNNCTCC 2 cut(s) 675, 705
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 782, 982
Bse118I RCCGGY 1 cut(s) 644
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 4 cut(s) 97, 413, 537, 966
BseDI CCNNGG 3 cut(s) 47, 67, 412
BseGI GGATG 3 cut(s) 266, 284, 316
BseLI CCNNNNNNNGG 3 cut(s) 113, 782, 982
BseMI GCAATG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 930
BshFI GGCC 3 cut(s) 100, 117, 986
BshNI GGYRCC 1 cut(s) 408
BsiSI CCGG 3 cut(s) 645, 776, 976
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 3 cut(s) 113, 782, 982
BsmAI GTCTC 1 cut(s) 695
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 3 cut(s) 100, 117, 986
Bsp1407I TGTACA 1 cut(s) 551
Bsp143I GATC 5 cut(s) 92, 210, 961, 968, 978
Bsp19I CCATGG 2 cut(s) 47, 67
BspACI CCGC 2 cut(s) 659, 987
BspANI GGCC 3 cut(s) 100, 117, 986
BspLI GGNNCC 1 cut(s) 410
BspPI GGATC 5 cut(s) 87, 218, 956, 976, 986
BspT107I GGYRCC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 644
BsrGI TGTACA 1 cut(s) 551
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 644
BssECI CCNNGG 3 cut(s) 47, 67, 412
BssMI GATC 5 cut(s) 92, 210, 961, 968, 978
BssNI GRCGYC 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 47, 67
Bst2UI CCWGG 4 cut(s) 97, 413, 537, 966
Bst4CI ACNGT 1 cut(s) 806
Bst6I CTCTTC 2 cut(s) 171, 507
BstACI GRCGYC 1 cut(s) 417
BstAUI TGTACA 1 cut(s) 551
BstDEI CTNAG 2 cut(s) 427, 675
BstDSI CCRYGG 2 cut(s) 47, 67
BstF5I GGATG 3 cut(s) 266, 284, 316
BstKTI GATC 5 cut(s) 95, 213, 964, 971, 981
BstMAI GTCTC 1 cut(s) 695
BstMBI GATC 5 cut(s) 92, 210, 961, 968, 978
BstMWI GCNNNNNNNGC 5 cut(s) 87, 641, 656, 876, 879
BstNI CCWGG 4 cut(s) 97, 413, 537, 966
BstSCI CCNGG 6 cut(s) 95, 411, 535, 774, 964, 974
BstX2I RGATCY 2 cut(s) 92, 968
BstYI RGATCY 2 cut(s) 92, 968
BsuRI GGCC 3 cut(s) 100, 117, 986
BtgI CCRYGG 2 cut(s) 47, 67
BtsCI GGATG 3 cut(s) 266, 284, 316
BtsIMutI CAGTG 1 cut(s) 213
CaiI CAGNNNCTG 2 cut(s) 96, 382
Cfr10I RCCGGY 1 cut(s) 644
CseI GACGC 1 cut(s) 406
CsiI ACCWGGT 1 cut(s) 535
Csp6I GTAC 4 cut(s) 146, 409, 552, 807
CviAII CATG 5 cut(s) 37, 48, 68, 131, 982
CviQI GTAC 4 cut(s) 146, 409, 552, 807
DdeI CTNAG 2 cut(s) 427, 675
DpnI GATC 5 cut(s) 94, 212, 963, 970, 980
DpnII GATC 5 cut(s) 92, 210, 961, 968, 978
EaeI YGGCCR 1 cut(s) 984
Eam1104I CTCTTC 2 cut(s) 171, 507
EarI CTCTTC 2 cut(s) 171, 507
Eco130I CCWWGG 2 cut(s) 47, 67
Eco57I CTGAAG 1 cut(s) 284
EcoRII CCWGG 4 cut(s) 95, 411, 535, 964
EcoT14I CCWWGG 2 cut(s) 47, 67
EcoT22I ATGCAT 1 cut(s) 42
ErhI CCWWGG 2 cut(s) 47, 67
FaeI CATG 5 cut(s) 40, 51, 71, 134, 985
FaqI GGGAC 1 cut(s) 696
FatI CATG 5 cut(s) 36, 47, 67, 130, 981
FokI GGATG 3 cut(s) 273, 291, 323
FspBI CTAG 3 cut(s) 456, 767, 897
HaeIII GGCC 3 cut(s) 100, 117, 986
HapII CCGG 3 cut(s) 645, 776, 976
HgaI GACGC 1 cut(s) 406
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 5 cut(s) 40, 51, 71, 134, 985
HinfI GANTC 5 cut(s) 4, 127, 578, 761, 893
HpaII CCGG 3 cut(s) 645, 776, 976
HphI GGTGA 5 cut(s) 277, 340, 502, 860, 959
Hpy188I TCNGA 3 cut(s) 292, 303, 802
Hpy188III TCNNGA 3 cut(s) 249, 506, 1017
HpyAV CCTTC 6 cut(s) 80, 111, 332, 480, 673, 948
HpyCH4III ACNGT 1 cut(s) 806
HpyCH4IV ACGT 1 cut(s) 797
HpyCH4V TGCA 8 cut(s) 40, 137, 559, 608, 638, 650, 911, 992
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 641, 656, 876, 879
HpyF3I CTNAG 2 cut(s) 427, 675
HpySE526I ACGT 1 cut(s) 797
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 5 cut(s) 40, 51, 71, 134, 985
KpnI GGTACC 1 cut(s) 412
Kzo9I GATC 5 cut(s) 92, 210, 961, 968, 978
LweI GCATC 5 cut(s) 49, 62, 90, 301, 390
MabI ACCWGGT 1 cut(s) 535
MaeI CTAG 3 cut(s) 456, 767, 897
MaeII ACGT 1 cut(s) 797
MaeIII GTNAC 4 cut(s) 283, 589, 619, 913
MalI GATC 5 cut(s) 94, 212, 963, 970, 980
MboI GATC 5 cut(s) 92, 210, 961, 968, 978
MboII GAAGA 5 cut(s) 188, 494, 577, 758, 863
MflI RGATCY 2 cut(s) 92, 968
MluCI AATT 9 cut(s) 13, 108, 192, 224, 255, 494, 668, 942, 993
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 256
Mph1103I ATGCAT 1 cut(s) 42
MseI TTAA 2 cut(s) 486, 530
MslI CAYNNNNRTG 1 cut(s) 842
MspA1I CMGCKG 4 cut(s) 605, 635, 659, 989
MspI CCGG 3 cut(s) 645, 776, 976
MspR9I CCNGG 6 cut(s) 97, 413, 537, 776, 966, 976
MvaI CCWGG 4 cut(s) 97, 413, 537, 966
MwoI GCNNNNNNNGC 5 cut(s) 87, 641, 656, 876, 879
NciI CCSGG 2 cut(s) 776, 976
NcoI CCATGG 2 cut(s) 47, 67
NdeII GATC 5 cut(s) 92, 210, 961, 968, 978
NlaIII CATG 5 cut(s) 40, 51, 71, 134, 985
NlaIV GGNNCC 1 cut(s) 410
NmuCI GTSAC 2 cut(s) 283, 913
NsiI ATGCAT 1 cut(s) 42
PfeI GAWTC 4 cut(s) 127, 578, 761, 893
PflFI GACNNNGTC 1 cut(s) 687
PfoI TCCNGGA 1 cut(s) 964
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 4 cut(s) 95, 411, 535, 964
PspGI CCWGG 4 cut(s) 95, 411, 535, 964
PspN4I GGNNCC 1 cut(s) 410
PstNI CAGNNNCTG 2 cut(s) 96, 382
PsuI RGATCY 2 cut(s) 92, 968
PsyI GACNNNGTC 1 cut(s) 687
PvuII CAGCTG 2 cut(s) 605, 635
RsaI GTAC 4 cut(s) 147, 410, 553, 808
RsaNI GTAC 4 cut(s) 146, 409, 552, 807
RseI CAYNNNNRTG 1 cut(s) 842
SaqAI TTAA 2 cut(s) 486, 530
Sau3AI GATC 5 cut(s) 92, 210, 961, 968, 978
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 6 cut(s) 97, 413, 537, 776, 966, 976
SexAI ACCWGGT 1 cut(s) 535
SfaNI GCATC 5 cut(s) 49, 62, 90, 301, 390
SgrAI CRCCGGYG 1 cut(s) 644
SmiMI CAYNNNNRTG 1 cut(s) 842
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
Sse9I AATT 9 cut(s) 13, 108, 192, 224, 255, 494, 668, 942, 993
SsiI CCGC 2 cut(s) 659, 987
SspMI CTAG 3 cut(s) 456, 767, 897
StyD4I CCNGG 6 cut(s) 95, 411, 535, 774, 964, 974
StyI CCWWGG 2 cut(s) 47, 67
TaaI ACNGT 1 cut(s) 806
TaiI ACGT 1 cut(s) 800
TaqI TCGA 2 cut(s) 84, 112
TasI AATT 9 cut(s) 13, 108, 192, 224, 255, 494, 668, 942, 993
TatI WGTACW 1 cut(s) 551
TauI GCSGC 2 cut(s) 662, 989
TfiI GAWTC 4 cut(s) 127, 578, 761, 893
Tru1I TTAA 2 cut(s) 486, 530
Tru9I TTAA 2 cut(s) 486, 530
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 2 cut(s) 283, 913
Tsp45I GTSAC 2 cut(s) 283, 913
TspDTI ATGAA 3 cut(s) 119, 168, 765
TspRI CASTG 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 687
XapI RAATTY 2 cut(s) 192, 494
XspI CTAG 3 cut(s) 456, 767, 897
Zsp2I ATGCAT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.