Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002815

Physical Location & Seq

Genomic Coordinates Forward (+)

32747343 .. 32750885

Gene Structure 3543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG297500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTGCCTGAAGGGGTGGGTGCGGTTAGAAGCACAAACCGATATGTGTTGGCTTTGCGAGCAGCCACAGGAATCAGGGAACCTGAGCAGAATGTTCAAAAGAAATTGGACAAAGCTGAGAAGGAGAGGGACACATATCTTGTGCAGCTTCGTCAATGTGAGAAAAGAATTGAGGAACTAAACAAGGAAGTGGAGGACGTCAGGAGAAAACATGAAACAGAAGTTGCGACTCATAACAAAAATTTGGAAATTCTTAAGAAAACTTTGGAGAATGAGTACAAAGGAAAATTGCAAGCTGTTGTGGACCAGCTGATGAACAAGCATACCTTAGAGGTGCAGACTCTCGACTTCACTGCTCAGCAAGCTGGTCAAATGATGCAAAGGGATCACTATGAACAGACTCAGAATATTATCCACCAAACTCATGAAAAAGCTATTGAAGTTATACTGGAGGATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.91

Weight (kDa)

6.18

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20410 AT2G20410
fragaria_vesca	FvH4_6g02180 FvH4_6g02180
malus_domestica	MD04G1229000.v1.1 MD12G1246100.v1.1
prunus_persica	Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1
pyrus_communis	pycom04g20290
rosa_chinensis	RchiOBHm_Chr3g0449951 RchiOBHm_Chr6g0274061
rosa_laevigata	RLG00000025772 RLG00000032996
rosa_multiflora	Rmu_co8322955.1_g000001 Rmu_sc0002646.1_g000003 Rmu_sc0008674.1_g000001 Rmu_sc0008896.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427740
rosa_rugosa	Rorug02G0624200
rosa_samantha	Rh3AG023300 Rh3BG024000 Rh3CG023000 Rh3DG023800 Rh5CG297500 Rh6BG165100 Rh6CG198200 Rh6DG150800
rosa_wichuraiana	Rw3G001870 Rw6G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	393
AcsI	RAATTY	2 cut(s)	241, 249
AcuI	CTGAAG	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	278
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	98, 440
AluBI	AGCT	6 cut(s)	116, 148, 296, 310, 365, 434
AluI	AGCT	6 cut(s)	116, 148, 296, 310, 365, 434
AlwI	GGATC	1 cut(s)	393
ApeKI	GCWGC	2 cut(s)	62, 145
ApoI	RAATTY	2 cut(s)	241, 249
AspS9I	GGNCC	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	74, 157
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	2 cut(s)	63, 146
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	2 cut(s)	64, 147
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	6, 81
BmsI	GCATC	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu1102I	GCTNAGC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bse1I	ACTGG	1 cut(s)	453
BseMII	CTCAG	4 cut(s)	75, 108, 371, 416
BseNI	ACTGG	1 cut(s)	453
BseXI	GCAGC	2 cut(s)	74, 157
BsgI	GTGCAG	2 cut(s)	164, 356
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	385, 454
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	4 cut(s)	76, 109, 370, 415
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	6, 81
BspPI	GGATC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	453
BssMI	GATC	2 cut(s)	385, 454
BssNI	GRCGYC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	198
BstAFI	CTTAAG	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	60, 294, 363
BstDEI	CTNAG	5 cut(s)	84, 117, 328, 357, 402
BstKTI	GATC	2 cut(s)	388, 457
BstMBI	GATC	2 cut(s)	385, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 362
BstV1I	GCAGC	2 cut(s)	74, 157
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	3 cut(s)	60, 294, 363
CciI	TCATGA	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	2 cut(s)	212, 425
CviJI	RGCY	8 cut(s)	53, 65, 116, 148, 296, 310, 365, 434
CviKI_1	RGCY	8 cut(s)	53, 65, 116, 148, 296, 310, 365, 434
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	5 cut(s)	84, 117, 328, 357, 402
DpnI	GATC	2 cut(s)	387, 456
DpnII	GATC	2 cut(s)	385, 454
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	30
FaeI	CATG	2 cut(s)	215, 428
FaiI	YATR	8 cut(s)	45, 136, 213, 234, 324, 393, 426, 446
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	211, 424
Fnu4HI	GCNGC	2 cut(s)	63, 146
Fsp4HI	GCNGC	2 cut(s)	63, 146
GluI	GCNGC	2 cut(s)	63, 146
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	215, 428
HinfI	GANTC	4 cut(s)	72, 229, 340, 400
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	405
Hpy188III	TCNNGA	3 cut(s)	202, 344, 425
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	5, 115
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	4 cut(s)	145, 292, 337, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 362
HpyF3I	CTNAG	5 cut(s)	84, 117, 328, 357, 402
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	215, 428
Kzo9I	GATC	2 cut(s)	385, 454
LpnPI	CCDG	8 cut(s)	21, 54, 61, 96, 187, 320, 351, 434
Lsp1109I	GCAGC	2 cut(s)	74, 157
LweI	GCATC	1 cut(s)	366
MaeII	ACGT	1 cut(s)	198
MalI	GATC	2 cut(s)	387, 456
MboI	GATC	2 cut(s)	385, 454
MluCI	AATT	5 cut(s)	104, 168, 241, 249, 287
MlyI	GAGTC	3 cut(s)	223, 334, 394
MnlI	CCTC	5 cut(s)	120, 166, 187, 325, 445
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	310
MspCI	CTTAAG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	59, 362
NdeII	GATC	2 cut(s)	385, 454
NlaIII	CATG	2 cut(s)	215, 428
NlaIV	GGNNCC	2 cut(s)	6, 81
PagI	TCATGA	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	64, 147
PleI	GAGTC	3 cut(s)	223, 334, 394
PpsI	GAGTC	3 cut(s)	223, 334, 394
PspN4I	GGNNCC	2 cut(s)	6, 81
PspPI	GGNCC	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	2 cut(s)	63, 146
Sau3AI	GATC	2 cut(s)	385, 454
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	3 cut(s)	223, 334, 394
SfaNI	GCATC	1 cut(s)	366
SinI	GGWCC	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	104, 168, 241, 249, 287
SsiI	CCGC	1 cut(s)	23
SspI	AATATT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	345
TasI	AATT	5 cut(s)	104, 168, 241, 249, 287
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	2 cut(s)	62, 145
TspDTI	ATGAA	4 cut(s)	228, 329, 408, 441
TspRI	CASTG	1 cut(s)	358
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	2 cut(s)	241, 249
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.