Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002815

Physical Location & Seq

Genomic Coordinates Reverse (-)

73996359 .. 73996848

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0624200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTCTCAACCCTCTCAAGTTTTGCCTGCCAATGGTGGCAAATTTGTAGCTAGGGAGACCCAGGATGAAAGTAGCACAAGGCCAATTAATGTTGATGGGATTGATCAGGGACTGCTAGGGAGACCCGGCCATGATGAAAGTAGCACAAGGCCAATTAATGTTGATGGGATTGATCAGGGACTGGTTGACAAGATGGTGAAGACCATGTCTCAACCCTCTCAAGTTTTGCCTGCCAATGGTGGCAAATTTGTAGCTAGGGAGACCCAGGATGAAAGTAGCACAAGGCCAATTAATGTTGATGGGATTGATCAGGGACTGGTTGACAAGATGGTGTATGATGCTCTTATTTGGAGCTCAATTCATGGCCTTGTTGTTGGTGACAGGTCTCTGTTCAGAGGTCATCAACAATACCTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASCH

Protein Analysis

139

Amino Acids

15.1

Weight (kDa)

4.95

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20410 AT2G20410
fragaria_vesca	FvH4_6g02180 FvH4_6g02180
malus_domestica	MD04G1229000.v1.1 MD12G1246100.v1.1
prunus_persica	Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1
pyrus_communis	pycom04g20290
rosa_chinensis	RchiOBHm_Chr3g0449951 RchiOBHm_Chr6g0274061
rosa_laevigata	RLG00000025772 RLG00000032996
rosa_multiflora	Rmu_co8322955.1_g000001 Rmu_sc0002646.1_g000003 Rmu_sc0008674.1_g000001 Rmu_sc0008896.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427740
rosa_rugosa	Rorug02G0624200
rosa_samantha	Rh3AG023300 Rh3BG024000 Rh3CG023000 Rh3DG023800 Rh5CG297500 Rh6BG165100 Rh6CG198200 Rh6DG150800
rosa_wichuraiana	Rw3G001870 Rw6G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	41, 245
AfiI	CCNNNNNNNGG	2 cut(s)	32, 236
AjnI	CCWGG	3 cut(s)	60, 264, 411
AluBI	AGCT	3 cut(s)	50, 254, 354
AluI	AGCT	3 cut(s)	50, 254, 354
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	6 cut(s)	9, 50, 115, 213, 254, 390
AlwNI	CAGNNNCTG	3 cut(s)	112, 181, 316
AoxI	GGCC	5 cut(s)	80, 127, 149, 284, 364
ApoI	RAATTY	2 cut(s)	41, 245
AseI	ATTAAT	3 cut(s)	87, 156, 291
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	208, 389
BanII	GRGCYC	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	356
BccI	CCATC	5 cut(s)	89, 158, 187, 293, 322
BciT130I	CCWGG	3 cut(s)	62, 266, 413
BclI	TGATCA	3 cut(s)	103, 172, 307
BcnI	CCSGG	1 cut(s)	126
BcoDI	GTCTC	6 cut(s)	9, 50, 115, 213, 254, 390
BfaI	CTAG	3 cut(s)	51, 116, 255
Bme1390I	CCNGG	4 cut(s)	62, 126, 266, 413
BmrFI	CCNGG	4 cut(s)	62, 126, 266, 413
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	126
BsaI	GGTCTC	4 cut(s)	50, 115, 254, 390
BsaJI	CCNNGG	2 cut(s)	60, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 236
Bse1I	ACTGG	2 cut(s)	186, 321
BseBI	CCWGG	3 cut(s)	62, 266, 413
BseDI	CCNNGG	2 cut(s)	60, 264
BseGI	GGATG	2 cut(s)	70, 274
BseLI	CCNNNNNNNGG	2 cut(s)	32, 236
BseNI	ACTGG	2 cut(s)	186, 321
BshFI	GGCC	5 cut(s)	82, 129, 151, 286, 366
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	3 cut(s)	123, 192, 327
BslI	CCNNNNNNNGG	2 cut(s)	32, 236
BsmAI	GTCTC	6 cut(s)	9, 50, 115, 213, 254, 390
BsmFI	GGGAC	3 cut(s)	123, 192, 327
BsnI	GGCC	5 cut(s)	82, 129, 151, 286, 366
Bso31I	GGTCTC	4 cut(s)	50, 115, 254, 390
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	103, 172, 307
BspANI	GGCC	5 cut(s)	82, 129, 151, 286, 366
BspTNI	GGTCTC	4 cut(s)	50, 115, 254, 390
BsrI	ACTGG	2 cut(s)	186, 321
BssECI	CCNNGG	2 cut(s)	60, 264
BssMI	GATC	3 cut(s)	103, 172, 307
Bst2UI	CCWGG	3 cut(s)	62, 266, 413
BstC8I	GCNNGC	2 cut(s)	27, 231
BstF5I	GGATG	2 cut(s)	70, 274
BstKTI	GATC	3 cut(s)	106, 175, 310
BstMAI	GTCTC	6 cut(s)	9, 50, 115, 213, 254, 390
BstMBI	GATC	3 cut(s)	103, 172, 307
BstNI	CCWGG	3 cut(s)	62, 266, 413
BstSCI	CCNGG	4 cut(s)	60, 124, 264, 411
BstV2I	GAAGAC	1 cut(s)	206
BsuRI	GGCC	5 cut(s)	82, 129, 151, 286, 366
BtsCI	GGATG	2 cut(s)	70, 274
Cac8I	GCNNGC	2 cut(s)	27, 231
CaiI	CAGNNNCTG	3 cut(s)	112, 181, 316
CviAII	CATG	3 cut(s)	131, 205, 362
CviJI	RGCY	8 cut(s)	50, 82, 129, 151, 254, 286, 354, 366
CviKI_1	RGCY	8 cut(s)	50, 82, 129, 151, 254, 286, 354, 366
DpnI	GATC	3 cut(s)	105, 174, 309
DpnII	GATC	3 cut(s)	103, 172, 307
EaeI	YGGCCR	1 cut(s)	127
Ecl136II	GAGCTC	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	356
Eco31I	GGTCTC	4 cut(s)	50, 115, 254, 390
Eco53kI	GAGCTC	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	354
EcoRII	CCWGG	3 cut(s)	60, 264, 411
EcoT38I	GRGCYC	1 cut(s)	356
FaeI	CATG	3 cut(s)	134, 208, 365
FaiI	YATR	4 cut(s)	132, 206, 336, 363
FaqI	GGGAC	3 cut(s)	123, 192, 327
FatI	CATG	3 cut(s)	130, 204, 361
FbaI	TGATCA	3 cut(s)	103, 172, 307
FokI	GGATG	2 cut(s)	77, 281
FriOI	GRGCYC	1 cut(s)	356
FspBI	CTAG	3 cut(s)	51, 116, 255
HaeIII	GGCC	5 cut(s)	82, 129, 151, 286, 366
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	3 cut(s)	134, 208, 365
HincII	GTYRAC	2 cut(s)	187, 322
HindII	GTYRAC	2 cut(s)	187, 322
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	208, 389
Hpy166II	GTNNAC	2 cut(s)	187, 322
Hpy188I	TCNGA	1 cut(s)	395
Hpy8I	GTNNAC	2 cut(s)	187, 322
Hsp92II	CATG	3 cut(s)	134, 208, 365
Ksp22I	TGATCA	3 cut(s)	103, 172, 307
Kzo9I	GATC	3 cut(s)	103, 172, 307
LmnI	GCTCC	1 cut(s)	351
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	3 cut(s)	51, 116, 255
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	3 cut(s)	105, 174, 309
MboI	GATC	3 cut(s)	103, 172, 307
MboII	GAAGA	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	6 cut(s)	41, 84, 153, 245, 288, 357
MnlI	CCTC	3 cut(s)	22, 226, 389
MseI	TTAA	3 cut(s)	87, 156, 291
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	4 cut(s)	62, 126, 266, 413
MvaI	CCWGG	3 cut(s)	62, 266, 413
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	3 cut(s)	103, 172, 307
NlaIII	CATG	3 cut(s)	134, 208, 365
NmuCI	GTSAC	1 cut(s)	377
PflFI	GACNNNGTC	1 cut(s)	205
PshBI	ATTAAT	3 cut(s)	87, 156, 291
Psp124BI	GAGCTC	1 cut(s)	356
Psp6I	CCWGG	3 cut(s)	60, 264, 411
PspGI	CCWGG	3 cut(s)	60, 264, 411
PstNI	CAGNNNCTG	3 cut(s)	112, 181, 316
PsyI	GACNNNGTC	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	87, 156, 291
Sau3AI	GATC	3 cut(s)	103, 172, 307
ScrFI	CCNGG	4 cut(s)	62, 126, 266, 413
SduI	GDGCHC	1 cut(s)	356
SetI	ASST	6 cut(s)	52, 256, 356, 386, 400, 414
SfaNI	GCATC	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	15, 219
SmoI	CTYRAG	2 cut(s)	15, 219
Sse9I	AATT	6 cut(s)	41, 84, 153, 245, 288, 357
SspMI	CTAG	3 cut(s)	51, 116, 255
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	4 cut(s)	60, 124, 264, 411
TasI	AATT	6 cut(s)	41, 84, 153, 245, 288, 357
Tru1I	TTAA	3 cut(s)	87, 156, 291
Tru9I	TTAA	3 cut(s)	87, 156, 291
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	4 cut(s)	81, 150, 285, 350
Tth111I	GACNNNGTC	1 cut(s)	205
VspI	ATTAAT	3 cut(s)	87, 156, 291
XapI	RAATTY	2 cut(s)	41, 245
XspI	CTAG	3 cut(s)	51, 116, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.