Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002815

Physical Location & Seq

Genomic Coordinates Reverse (-)

21807965 .. 21809076

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20290.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGAAGAGGAGGAGGAGGAGGACATTCTTCTTTTGGGAATTACAGAAACCCATGTCTGACTATGCACCAACCATGGGCTTCTTTGCTGGTTTATGGCATCAAGCGCGTCGAGGGCAGGTCCTGGCCTTCTCCTATCCGAGGCCGTCTCTGGATTCATGCCACTGCTAAGGTTCCTGATGAAGCTACAATCAAGGCAATGGAGGAATTCTACCGAGAAATTTATCCAGTTGAAGGAATCATCGATCTTAGATTTCCGGAACATTACCCCGTTTCCCTGACTTTTAGGTATTCTAAGGTGTGTCGAAGTGGCTGGATGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASCH

Protein Analysis

108

Amino Acids

12.36

Weight (kDa)

9.55

Isoelectric Point (pI)

64.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20410 AT2G20410
fragaria_vesca	FvH4_6g02180 FvH4_6g02180
malus_domestica	MD04G1229000.v1.1 MD12G1246100.v1.1
prunus_persica	Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1
pyrus_communis	pycom04g20290
rosa_chinensis	RchiOBHm_Chr3g0449951 RchiOBHm_Chr6g0274061
rosa_laevigata	RLG00000025772 RLG00000032996
rosa_multiflora	Rmu_co8322955.1_g000001 Rmu_sc0002646.1_g000003 Rmu_sc0008674.1_g000001 Rmu_sc0008896.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427740
rosa_rugosa	Rorug02G0624200
rosa_samantha	Rh3AG023300 Rh3BG024000 Rh3CG023000 Rh3DG023800 Rh5CG297500 Rh6BG165100 Rh6CG198200 Rh6DG150800
rosa_wichuraiana	Rw3G001870 Rw6G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	108
AccII	CGCG	1 cut(s)	108
AccIII	TCCGGA	1 cut(s)	256
AcsI	RAATTY	2 cut(s)	206, 219
AfiI	CCNNNNNNNGG	3 cut(s)	76, 140, 233
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	2 cut(s)	125, 142
ApoI	RAATTY	2 cut(s)	206, 219
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	120
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
Bpu10I	CCTNAGC	1 cut(s)	168
Bsa29I	ATCGAT	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	74, 139
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 140, 233
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	124
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	74, 139
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	3 cut(s)	76, 140, 233
BseMI	GCAATG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	4 cut(s)	24, 27, 30, 33
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	127, 144
BshVI	ATCGAT	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	3 cut(s)	76, 140, 233
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	127, 144
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	244
Bsp19I	CCATGG	1 cut(s)	74
BspANI	GGCC	2 cut(s)	127, 144
BspDI	ATCGAT	1 cut(s)	243
BspEI	TCCGGA	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	174
BspMI	ACCTGC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	74, 139
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	168, 248, 294
BstDSI	CCRYGG	1 cut(s)	74
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 114
BstNI	CCWGG	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	122
BstUI	CGCG	1 cut(s)	108
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	127, 144
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	108
CaiI	CAGNNNCTG	1 cut(s)	123
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	243
CseI	GACGC	1 cut(s)	97
CviAII	CATG	3 cut(s)	54, 75, 158
CviJI	RGCY	5 cut(s)	80, 127, 144, 185, 312
CviKI_1	RGCY	5 cut(s)	80, 127, 144, 185, 312
DdeI	CTNAG	3 cut(s)	168, 248, 294
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	120
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	3 cut(s)	57, 78, 161
FaiI	YATR	5 cut(s)	55, 65, 76, 96, 159
FatI	CATG	3 cut(s)	53, 74, 157
GlaI	GCGC	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	127, 144
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	57, 78, 161
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	154, 237
HpaII	CCGG	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	60, 140
Hpy188III	TCNNGA	3 cut(s)	151, 176, 257
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	138, 227
HpyCH4V	TGCA	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 114
HpyF3I	CTNAG	3 cut(s)	168, 248, 294
Hsp92II	CATG	3 cut(s)	57, 78, 161
HspAI	GCGC	1 cut(s)	106
Kpn2I	TCCGGA	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	244
LweI	GCATC	1 cut(s)	108
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	18, 21
MluCI	AATT	3 cut(s)	40, 206, 219
MnlI	CCTC	7 cut(s)	5, 8, 11, 14, 106, 134, 196
MroI	TCCGGA	1 cut(s)	256
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	105, 114
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	57, 78, 161
NlaIV	GGNNCC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	154, 237
PpuMI	RGGWCCY	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	120
PspPPI	RGGWCCY	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	5 cut(s)	122, 174, 187, 290, 300
SfaNI	GCATC	1 cut(s)	108
SinI	GGWCC	1 cut(s)	120
Sse9I	AATT	3 cut(s)	40, 206, 219
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	74
TaqI	TCGA	3 cut(s)	111, 243, 304
TasI	AATT	3 cut(s)	40, 206, 219
TfiI	GAWTC	2 cut(s)	154, 237
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	146, 195
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	120
XagI	CCTNNNNNAGG	1 cut(s)	138
XapI	RAATTY	2 cut(s)	206, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.