Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008896.1

Orthogroup ID

OG0002815

Physical Location & Seq

Genomic Coordinates Reverse (-)

53473 .. 54117

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008896.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgggttcaatttcaaatggctttgatttccttttgatgttgatcgtgattttaattaagatatatgaagctgctattagaggtctcaccccggttgaagttcctctcccgcttaaatttccacttccaaatccacaagatccattttccttgaagccggggtctatatctgcaaatgttgatcaatctagaacatctgaagagggaagatcttcgagtctcaatgcagccatggctggtgcacaagcagctgctacacagttctccaaaaaagctcaaactaagccggcctatttttttcttccttcactttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASCH

Protein Analysis

105

Amino Acids

11.23

Weight (kDa)

8.89

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20410 AT2G20410
fragaria_vesca	FvH4_6g02180 FvH4_6g02180
malus_domestica	MD04G1229000.v1.1 MD12G1246100.v1.1
prunus_persica	Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1
pyrus_communis	pycom04g20290
rosa_chinensis	RchiOBHm_Chr3g0449951 RchiOBHm_Chr6g0274061
rosa_laevigata	RLG00000025772 RLG00000032996
rosa_multiflora	Rmu_co8322955.1_g000001 Rmu_sc0002646.1_g000003 Rmu_sc0008674.1_g000001 Rmu_sc0008896.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427740
rosa_rugosa	Rorug02G0624200
rosa_samantha	Rh3AG023300 Rh3BG024000 Rh3CG023000 Rh3DG023800 Rh5CG297500 Rh6BG165100 Rh6CG198200 Rh6DG150800
rosa_wichuraiana	Rw3G001870 Rw6G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	219
AgsI	TTSAA	4 cut(s)	9, 15, 98, 154
AluBI	AGCT	3 cut(s)	71, 251, 275
AluI	AGCT	3 cut(s)	71, 251, 275
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	2 cut(s)	89, 224
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	288
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	4 cut(s)	71, 227, 248, 251
ApoI	RAATTY	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	211
AsuC2I	CCSGG	2 cut(s)	92, 159
AsuHPI	GGTGA	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	4 cut(s)	58, 238, 239, 260
BclI	TGATCA	1 cut(s)	181
BcnI	CCSGG	2 cut(s)	92, 159
BcoDI	GTCTC	2 cut(s)	89, 224
BfaI	CTAG	1 cut(s)	189
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	4 cut(s)	72, 228, 249, 252
BlsI	GCNGC	4 cut(s)	73, 229, 250, 253
Bme1390I	CCNGG	2 cut(s)	92, 159
BmrFI	CCNGG	2 cut(s)	92, 159
BpuMI	CCSGG	2 cut(s)	92, 159
BsaBI	GATNNNNATC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	90, 158, 231
Bse118I	RCCGGY	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	3 cut(s)	90, 158, 231
BseJI	GATNNNNATC	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	4 cut(s)	58, 238, 239, 260
BshFI	GGCC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	3 cut(s)	92, 158, 287
BsmAI	GTCTC	2 cut(s)	89, 224
BsnI	GGCC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	4 cut(s)	42, 139, 181, 209
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	290
BspPI	GGATC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	3 cut(s)	90, 158, 231
BssMI	GATC	4 cut(s)	42, 139, 181, 209
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	231
BstKTI	GATC	4 cut(s)	45, 142, 184, 212
BstMAI	GTCTC	2 cut(s)	89, 224
BstMBI	GATC	4 cut(s)	42, 139, 181, 209
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 248
BstSCI	CCNGG	2 cut(s)	90, 157
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	4 cut(s)	58, 238, 239, 260
BstX2I	RGATCY	2 cut(s)	139, 209
BstYI	RGATCY	2 cut(s)	139, 209
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	286
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	9 cut(s)	21, 71, 157, 230, 236, 251, 275, 286, 290
CviKI_1	RGCY	9 cut(s)	21, 71, 157, 230, 236, 251, 275, 286, 290
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	4 cut(s)	44, 141, 183, 211
DpnII	GATC	4 cut(s)	42, 139, 181, 209
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	235
FaiI	YATR	4 cut(s)	64, 66, 167, 233
FatI	CATG	1 cut(s)	231
FauI	CCCGC	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	72, 228, 249, 252
Fsp4HI	GCNGC	4 cut(s)	72, 228, 249, 252
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	4 cut(s)	72, 228, 249, 252
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	3 cut(s)	92, 158, 287
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	3 cut(s)	92, 158, 287
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	46, 189
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	173, 227, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 248
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	235
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	42, 139, 181, 209
LpnPI	CCDG	4 cut(s)	105, 171, 222, 300
Lsp1109I	GCAGC	4 cut(s)	58, 238, 239, 260
MaeI	CTAG	1 cut(s)	189
MalI	GATC	4 cut(s)	44, 141, 183, 211
MboI	GATC	4 cut(s)	42, 139, 181, 209
MboII	GAAGA	4 cut(s)	204, 212, 219, 293
MflI	RGATCY	2 cut(s)	139, 209
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	9, 54, 116
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	3 cut(s)	74, 114, 196
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	211
MseI	TTAA	3 cut(s)	53, 57, 114
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	3 cut(s)	92, 158, 287
MspR9I	CCNGG	2 cut(s)	92, 159
MwoI	GCNNNNNNNGC	2 cut(s)	233, 248
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	2 cut(s)	92, 159
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	4 cut(s)	42, 139, 181, 209
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	235
PacI	TTAATTAA	1 cut(s)	57
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	211
PkrI	GCNGC	4 cut(s)	73, 229, 250, 253
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PsuI	RGATCY	2 cut(s)	139, 209
PvuII	CAGCTG	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	53, 57, 114
SatI	GCNGC	4 cut(s)	72, 228, 249, 252
Sau3AI	GATC	4 cut(s)	42, 139, 181, 209
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	92, 159
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	4 cut(s)	73, 85, 253, 277
Sse9I	AATT	3 cut(s)	9, 54, 116
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	90, 157
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	215
TasI	AATT	3 cut(s)	9, 54, 116
Tru1I	TTAA	3 cut(s)	53, 57, 114
Tru9I	TTAA	3 cut(s)	53, 57, 114
TseI	GCWGC	4 cut(s)	71, 227, 248, 251
TspDTI	ATGAA	1 cut(s)	81
VneI	GTGCAC	1 cut(s)	240
XapI	RAATTY	1 cut(s)	116
XbaI	TCTAGA	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.