Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002815

Physical Location & Seq

Genomic Coordinates Reverse (-)

35239675 .. 35241487

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24587

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGAAGCTGCTATTAGAGGTCTCACCCTGGTTGAAGTTTCTATTTCCACTTCCAAATCCACAAGATCCATTTTCCTTGAAGCCGGGGTCTATATCTGCAAACGTTGATCAATCTAGAACATCTGAAGCTGGAAGATCTTTGAGTCTCAATGCAGCCATAGCTGGTGCACGAGCAGCTGCTAAACAGTTCTCCAAAAAAGCTCAAACTTTTCCAACTACCTCCGTAAATGATGCAGCTAAATCTGTGACAGTTCCAATCATTTTTCTGGAAGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASCH

Protein Analysis

92

Amino Acids

9.86

Weight (kDa)

9.6

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20410 AT2G20410
fragaria_vesca	FvH4_6g02180 FvH4_6g02180
malus_domestica	MD04G1229000.v1.1 MD12G1246100.v1.1
prunus_persica	Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1
pyrus_communis	pycom04g20290
rosa_chinensis	RchiOBHm_Chr3g0449951 RchiOBHm_Chr6g0274061
rosa_laevigata	RLG00000025772 RLG00000032996
rosa_multiflora	Rmu_co8322955.1_g000001 Rmu_sc0002646.1_g000003 Rmu_sc0008674.1_g000001 Rmu_sc0008896.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427740
rosa_rugosa	Rorug02G0624200
rosa_samantha	Rh3AG023300 Rh3BG024000 Rh3CG023000 Rh3DG023800 Rh5CG297500 Rh6BG165100 Rh6CG198200 Rh6DG150800
rosa_wichuraiana	Rw3G001870 Rw6G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	102
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	34, 79
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	6 cut(s)	7, 128, 161, 176, 200, 236
AluI	AGCT	6 cut(s)	7, 128, 161, 176, 200, 236
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	25, 149
Alw44I	GTGCAC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	59
ApaLI	GTGCAC	1 cut(s)	165
ApeKI	GCWGC	5 cut(s)	7, 152, 173, 176, 233
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	4 cut(s)	163, 164, 185, 245
BciT130I	CCWGG	1 cut(s)	28
BclI	TGATCA	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	25, 149
BfaI	CTAG	1 cut(s)	114
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	5 cut(s)	8, 153, 174, 177, 234
BlsI	GCNGC	5 cut(s)	9, 154, 175, 178, 235
Bme1390I	CCNGG	2 cut(s)	28, 84
BmrFI	CCNGG	2 cut(s)	28, 84
BmsI	GCATC	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	26, 83
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	26, 83
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	4 cut(s)	163, 164, 185, 245
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	25, 149
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	64, 106, 134
BspPI	GGATC	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	264
BspTNI	GGTCTC	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	26, 83
BssMI	GATC	3 cut(s)	64, 106, 134
BssSI	CACGAG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	186, 250
Bst6I	CTCTTC	1 cut(s)	264
BstKTI	GATC	3 cut(s)	67, 109, 137
BstMAI	GTCTC	2 cut(s)	25, 149
BstMBI	GATC	3 cut(s)	64, 106, 134
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 173
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	26, 82
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	4 cut(s)	163, 164, 185, 245
BstX2I	RGATCY	2 cut(s)	64, 134
BstYI	RGATCY	2 cut(s)	64, 134
CviJI	RGCY	9 cut(s)	7, 82, 128, 155, 161, 176, 200, 236, 274
CviKI_1	RGCY	9 cut(s)	7, 82, 128, 155, 161, 176, 200, 236, 274
DpnI	GATC	3 cut(s)	66, 108, 136
DpnII	GATC	3 cut(s)	64, 106, 134
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	26
FaiI	YATR	3 cut(s)	92, 158, 277
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	5 cut(s)	8, 153, 174, 177, 234
Fsp4HI	GCNGC	5 cut(s)	8, 153, 174, 177, 234
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	5 cut(s)	8, 153, 174, 177, 234
HapII	CCGG	1 cut(s)	83
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	114, 266
Hpy8I	GTNNAC	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	186, 250
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	98, 152, 167, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 173
HpySE526I	ACGT	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	64, 106, 134
LguI	GCTCTTC	1 cut(s)	264
LpnPI	CCDG	6 cut(s)	13, 40, 96, 114, 147, 251
Lsp1109I	GCAGC	4 cut(s)	163, 164, 185, 245
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	3 cut(s)	66, 108, 136
MboI	GATC	3 cut(s)	64, 106, 134
MboII	GAAGA	1 cut(s)	144
MflI	RGATCY	2 cut(s)	64, 134
MhlI	GDGCHC	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	2 cut(s)	10, 229
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	28, 84
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	158, 173
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	3 cut(s)	64, 106, 134
NmuCI	GTSAC	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	264
PkrI	GCNGC	5 cut(s)	9, 154, 175, 178, 235
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Psp1406I	AACGTT	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PsuI	RGATCY	2 cut(s)	64, 134
PvuII	CAGCTG	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	264
SatI	GCNGC	5 cut(s)	8, 153, 174, 177, 234
Sau3AI	GATC	3 cut(s)	64, 106, 134
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	2 cut(s)	28, 84
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	9 cut(s)	9, 21, 105, 130, 163, 178, 202, 221, 238
SfaNI	GCATC	1 cut(s)	220
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	26, 82
TaaI	ACNGT	2 cut(s)	186, 250
TaiI	ACGT	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	5 cut(s)	7, 152, 173, 176, 233
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	165
XbaI	TCTAGA	1 cut(s)	113
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.