Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002815

Physical Location & Seq

Genomic Coordinates Reverse (-)

33056347 .. 33056942

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG198200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGTACCTGAAGGGGTGGGTTTACTTGGTGCGGCTAGAAGCACAAACCGATATGTGTTGGCTTTGCAAGTAGCCACAGAAACTGTTAATGCTGATCGAGATGCGTGGCTACCAAGATATATGAAGCTGCTATTAGAGGTCTCACCCTGGTTGAAGTTTCTATTTCCACTTCCAAATCCACAAGATCCGTTTTCCTTGAAGCCGGGGTCTATATCTGCAACCGTTGATCAATCTAGAACATCTGAAGCTGGAAGATCTTTGAGTCTTAATGCAGCCATAGCTGGTGCACGAGCAGCTGCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASCH

Protein Analysis

101

Amino Acids

10.82

Weight (kDa)

9.69

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20410 AT2G20410
fragaria_vesca	FvH4_6g02180 FvH4_6g02180
malus_domestica	MD04G1229000.v1.1 MD12G1246100.v1.1
prunus_persica	Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1
pyrus_communis	pycom04g20290
rosa_chinensis	RchiOBHm_Chr3g0449951 RchiOBHm_Chr6g0274061
rosa_laevigata	RLG00000025772 RLG00000032996
rosa_multiflora	Rmu_co8322955.1_g000001 Rmu_sc0002646.1_g000003 Rmu_sc0008674.1_g000001 Rmu_sc0008896.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427740
rosa_rugosa	Rorug02G0624200
rosa_samantha	Rh3AG023300 Rh3BG024000 Rh3CG023000 Rh3DG023800 Rh5CG297500 Rh6BG165100 Rh6CG198200 Rh6DG150800
rosa_wichuraiana	Rw3G001870 Rw6G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	179
AcuI	CTGAAG	2 cut(s)	30, 264
AfaI	GTAC	1 cut(s)	6
AgsI	TTSAA	2 cut(s)	154, 199
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	4 cut(s)	127, 248, 281, 296
AluI	AGCT	4 cut(s)	127, 248, 281, 296
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	145
Alw44I	GTGCAC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	83
ApaLI	GTGCAC	1 cut(s)	285
ApeKI	GCWGC	4 cut(s)	127, 272, 293, 296
Asp718I	GGTACC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	135
BaeGI	GKGCMC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	3 cut(s)	114, 283, 284
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	36, 234
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	5 cut(s)	33, 128, 273, 294, 297
BlsI	GCNGC	5 cut(s)	34, 129, 274, 295, 298
Bme1390I	CCNGG	2 cut(s)	148, 204
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	148, 204
BmsI	GCATC	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	146, 203
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	146, 203
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	3 cut(s)	114, 283, 284
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	145
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	4 cut(s)	94, 184, 226, 254
BspACI	CCGC	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	146, 203
BssMI	GATC	4 cut(s)	94, 184, 226, 254
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	85, 223
BstKTI	GATC	4 cut(s)	97, 187, 229, 257
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	4 cut(s)	94, 184, 226, 254
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 293
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	2 cut(s)	146, 202
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	3 cut(s)	114, 283, 284
BstX2I	RGATCY	2 cut(s)	184, 254
BstYI	RGATCY	2 cut(s)	184, 254
CaiI	CAGNNNCTG	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	5
CviQI	GTAC	1 cut(s)	5
DpnI	GATC	4 cut(s)	96, 186, 228, 256
DpnII	GATC	4 cut(s)	94, 184, 226, 254
Eco31I	GGTCTC	1 cut(s)	145
Eco57I	CTGAAG	2 cut(s)	30, 264
EcoRII	CCWGG	1 cut(s)	146
FaiI	YATR	5 cut(s)	54, 120, 122, 212, 278
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	5 cut(s)	33, 128, 273, 294, 297
Fsp4HI	GCNGC	5 cut(s)	33, 128, 273, 294, 297
FspBI	CTAG	2 cut(s)	36, 234
GluI	GCNGC	5 cut(s)	33, 128, 273, 294, 297
HapII	CCGG	1 cut(s)	203
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	2 cut(s)	23, 287
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	98, 234
Hpy8I	GTNNAC	2 cut(s)	23, 287
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	2 cut(s)	85, 223
HpyCH4V	TGCA	4 cut(s)	67, 218, 272, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 293
KpnI	GGTACC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	94, 184, 226, 254
LpnPI	CCDG	6 cut(s)	21, 133, 160, 216, 234, 267
Lsp1109I	GCAGC	3 cut(s)	114, 283, 284
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	2 cut(s)	36, 234
MalI	GATC	4 cut(s)	96, 186, 228, 256
MboI	GATC	4 cut(s)	94, 184, 226, 254
MboII	GAAGA	1 cut(s)	264
MflI	RGATCY	2 cut(s)	184, 254
MhlI	GDGCHC	1 cut(s)	289
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	1 cut(s)	130
MseI	TTAA	2 cut(s)	87, 267
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	148, 204
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	278, 293
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	4 cut(s)	94, 184, 226, 254
NlaIV	GGNNCC	1 cut(s)	6
PkrI	GCNGC	5 cut(s)	34, 129, 274, 295, 298
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	2 cut(s)	184, 254
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SaqAI	TTAA	2 cut(s)	87, 267
SatI	GCNGC	5 cut(s)	33, 128, 273, 294, 297
Sau3AI	GATC	4 cut(s)	94, 184, 226, 254
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	148, 204
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	6 cut(s)	10, 129, 141, 250, 283, 298
SfaNI	GCATC	1 cut(s)	91
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	36, 234
StyD4I	CCNGG	2 cut(s)	146, 202
TaaI	ACNGT	2 cut(s)	85, 223
TaqI	TCGA	1 cut(s)	97
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	87, 267
Tru9I	TTAA	2 cut(s)	87, 267
TseI	GCWGC	4 cut(s)	127, 272, 293, 296
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	177
VneI	GTGCAC	1 cut(s)	285
XbaI	TCTAGA	1 cut(s)	233
XspI	CTAG	2 cut(s)	36, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.