Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002815

Physical Location & Seq

Genomic Coordinates Reverse (-)

43514726 .. 43517306

Gene Structure 2581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGCGGCGGGTTGGAGTTTGTAACATATATGAGACCCCATTTAACTATGATATCAACCACAAAGAGCTCCACCAGCAATTCCATGACAAGCCAACCAAAAAACTCACACAGTCACCACCAGCAATTCCTACGTCTCCAGCCTCACCGCCAACACCCAACTCATTACTCACCTCCTCTGCTCCCTTGCTCTTTCCTCATCAACCCCATTTCACTATTCTCTCTCTCTCTACCACTCCATCACCCCCCCCCCCCCCAACTGTTCTCTCTCTGGTGTGTTGAAGTAGTTGGATGTGTTAGACGCCAAGAGTTAGCTGGTTGGGAGATGGTACCTGAAGGGGTGCGGCTAGAAGCACAAACCGATATGTGTTGGCTTTGCGAGCAGCCACAGGTGTGTGTCTATAACTTGGAAAAGAAGCTTCTATTAGAGGTCTCACCCCGGTTGAAGTTTCTATTTCCACTTCCAAATCCACAAGATCCATTTTCCTTGAAGTCGGGGTCTATATCTGCAAACGTTGATCAATCTAGAACATCTGAAGTGGGAAGATCTTTGAGTCTCAATGCAGCCATAGCTGCTCAAACTTTCCCAACTACCTCTGTAAATGATGCAGCCAAATCTGTGACAGTTCCAATCAAGAGTGAATCTTTTGAACGGGGTAGAGCAATGACCGGTAATTTCAGTGAGAGCAATGACAGAAGAAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASCH

Protein Analysis

235

Amino Acids

26.28

Weight (kDa)

8.81

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20410 AT2G20410
fragaria_vesca	FvH4_6g02180 FvH4_6g02180
malus_domestica	MD04G1229000.v1.1 MD12G1246100.v1.1
prunus_persica	Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1
pyrus_communis	pycom04g20290
rosa_chinensis	RchiOBHm_Chr3g0449951 RchiOBHm_Chr6g0274061
rosa_laevigata	RLG00000025772 RLG00000032996
rosa_multiflora	Rmu_co8322955.1_g000001 Rmu_sc0002646.1_g000003 Rmu_sc0008674.1_g000001 Rmu_sc0008896.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427740
rosa_rugosa	Rorug02G0624200
rosa_samantha	Rh3AG023300 Rh3BG024000 Rh3CG023000 Rh3DG023800 Rh5CG297500 Rh6BG165100 Rh6CG198200 Rh6DG150800
rosa_wichuraiana	Rw3G001870 Rw6G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	4 cut(s)	6, 9, 148, 343
AclI	AACGTT	1 cut(s)	513
AclWI	GGATC	1 cut(s)	470
AcuI	CTGAAG	2 cut(s)	354, 555
AcyI	GRCGYC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	330
AgeI	ACCGGT	1 cut(s)	668
AgsI	TTSAA	4 cut(s)	281, 445, 490, 650
AleI	CACNNNNGTG	1 cut(s)	391
AluBI	AGCT	4 cut(s)	69, 314, 418, 572
AluI	AGCT	4 cut(s)	69, 314, 418, 572
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	4 cut(s)	28, 140, 436, 560
AlwI	GGATC	1 cut(s)	470
ApeKI	GCWGC	4 cut(s)	382, 563, 572, 608
AsiGI	ACCGGT	1 cut(s)	668
Asp718I	GGTACC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	5 cut(s)	107, 137, 162, 233, 426
BanI	GGYRCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	4 cut(s)	394, 559, 575, 620
BccI	CCATC	2 cut(s)	246, 319
BclI	TGATCA	1 cut(s)	517
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	4 cut(s)	28, 140, 436, 560
BfaI	CTAG	2 cut(s)	347, 525
BglII	AGATCT	1 cut(s)	545
BisI	GCNGC	6 cut(s)	7, 344, 383, 564, 573, 609
BlsI	GCNGC	6 cut(s)	8, 345, 384, 565, 574, 610
Bme1390I	CCNGG	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	439
BmsI	GCATC	1 cut(s)	595
BpmI	CTGGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	439
BsaHI	GRCGYC	1 cut(s)	301
BsaI	GGTCTC	2 cut(s)	28, 436
BsaJI	CCNNGG	1 cut(s)	437
BsaWI	WCCGGW	1 cut(s)	668
Bse118I	RCCGGY	1 cut(s)	668
Bse3DI	GCAATG	2 cut(s)	669, 694
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	1 cut(s)	296
BseMI	GCAATG	2 cut(s)	669, 694
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	4 cut(s)	394, 559, 575, 620
BshNI	GGYRCC	1 cut(s)	328
BshTI	ACCGGT	1 cut(s)	668
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	439, 669
BsmAI	GTCTC	4 cut(s)	28, 140, 436, 560
BsmBI	CGTCTC	1 cut(s)	140
Bso31I	GGTCTC	2 cut(s)	28, 436
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	3 cut(s)	475, 517, 545
BspACI	CCGC	4 cut(s)	6, 9, 148, 343
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	2 cut(s)	28, 436
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	2 cut(s)	669, 694
BsrFI	RCCGGY	1 cut(s)	668
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	3 cut(s)	475, 517, 545
BssNI	GRCGYC	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	113, 261, 625
Bst6I	CTCTTC	1 cut(s)	694
BstACI	GRCGYC	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	3 cut(s)	478, 520, 548
BstMAI	GTCTC	4 cut(s)	28, 140, 436, 560
BstMBI	GATC	3 cut(s)	475, 517, 545
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 379, 569, 572
BstSCI	CCNGG	1 cut(s)	437
BstV1I	GCAGC	4 cut(s)	394, 559, 575, 620
BstX2I	RGATCY	2 cut(s)	475, 545
BstYI	RGATCY	2 cut(s)	475, 545
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	685
Cac8I	GCNNGC	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	668
CseI	GACGC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	329
CspAI	ACCGGT	1 cut(s)	668
CviAII	CATG	1 cut(s)	85
CviQI	GTAC	1 cut(s)	329
DpnI	GATC	3 cut(s)	477, 519, 547
DpnII	GATC	3 cut(s)	475, 517, 545
Eam1104I	CTCTTC	1 cut(s)	694
EarI	CTCTTC	1 cut(s)	694
Ecl136II	GAGCTC	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	71
Eco31I	GGTCTC	2 cut(s)	28, 436
Eco32I	GATATC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	69
Eco57I	CTGAAG	2 cut(s)	354, 555
EcoICRI	GAGCTC	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	71
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	1 cut(s)	88
FaiI	YATR	9 cut(s)	28, 30, 32, 50, 86, 365, 402, 503, 569
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	2
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	6 cut(s)	7, 344, 383, 564, 573, 609
FokI	GGATG	1 cut(s)	303
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	6 cut(s)	7, 344, 383, 564, 573, 609
FspBI	CTAG	2 cut(s)	347, 525
GluI	GCNGC	6 cut(s)	7, 344, 383, 564, 573, 609
GsuI	CTGGAG	1 cut(s)	122
HapII	CCGG	2 cut(s)	439, 669
HgaI	GACGC	1 cut(s)	309
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	2 cut(s)	553, 641
HpaII	CCGG	2 cut(s)	439, 669
HphI	GGTGA	5 cut(s)	107, 137, 162, 233, 426
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	2 cut(s)	525, 634
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	3 cut(s)	113, 261, 625
HpyCH4IV	ACGT	2 cut(s)	133, 513
HpyCH4V	TGCA	3 cut(s)	509, 563, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 379, 569, 572
HpySE526I	ACGT	2 cut(s)	133, 513
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	3 cut(s)	475, 517, 545
LmnI	GCTCC	2 cut(s)	74, 186
LpnPI	CCDG	9 cut(s)	88, 134, 152, 256, 300, 345, 374, 452, 682
Lsp1109I	GCAGC	4 cut(s)	394, 559, 575, 620
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	2 cut(s)	347, 525
MaeII	ACGT	2 cut(s)	133, 513
MaeIII	GTNAC	3 cut(s)	22, 113, 619
MalI	GATC	3 cut(s)	477, 519, 547
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	3 cut(s)	475, 517, 545
MboII	GAAGA	2 cut(s)	555, 708
MflI	RGATCY	2 cut(s)	475, 545
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	3 cut(s)	79, 125, 673
MlyI	GAGTC	1 cut(s)	562
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	7 cut(s)	153, 183, 186, 206, 421, 604, 695
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	391
MspI	CCGG	2 cut(s)	439, 669
MspR9I	CCNGG	1 cut(s)	439
MwoI	GCNNNNNNNGC	4 cut(s)	75, 379, 569, 572
NciI	CCSGG	1 cut(s)	439
NdeII	GATC	3 cut(s)	475, 517, 545
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	113, 619
OliI	CACNNNNGTG	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	641
PinAI	ACCGGT	1 cut(s)	668
PkrI	GCNGC	6 cut(s)	8, 345, 384, 565, 574, 610
PleI	GAGTC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	71
Psp1406I	AACGTT	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	475, 545
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	391
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	6 cut(s)	7, 344, 383, 564, 573, 609
Sau3AI	GATC	3 cut(s)	475, 517, 545
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	1 cut(s)	439
SduI	GDGCHC	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	391
Sse9I	AATT	3 cut(s)	79, 125, 673
SsiI	CCGC	4 cut(s)	6, 9, 148, 343
SspMI	CTAG	2 cut(s)	347, 525
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	437
TaaI	ACNGT	3 cut(s)	113, 261, 625
TaiI	ACGT	2 cut(s)	136, 516
TasI	AATT	3 cut(s)	79, 125, 673
TauI	GCSGC	2 cut(s)	9, 346
TfiI	GAWTC	1 cut(s)	641
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	685
TseFI	GTSAC	2 cut(s)	113, 619
TseI	GCWGC	4 cut(s)	382, 563, 572, 608
Tsp45I	GTSAC	2 cut(s)	113, 619
TspRI	CASTG	1 cut(s)	685
XbaI	TCTAGA	1 cut(s)	524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XspI	CTAG	2 cut(s)	347, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.