Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002815

Physical Location & Seq

Genomic Coordinates Forward (+)

21796535 .. 21803804

Gene Structure 7270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG150800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGTACCTAAAGCCCTGAAGGGGTGGATATATGAAGCTGCTATTAGAGGTCTTACCCCGGTTGAAGTTCCTCTCCCGCTTAAATTTTCACTTCCAAATCCACAAGATCCATTTTCCTTGAAGCCGGGGTCTATATCTGCAAACGTTGATCAATCTAGAACATCTGAAGAGGGAAGATCTTCGAGTATCAATGCAGCCATAGCTGGTGCACAAGCAGCTGCTACACATTTAGATGAGAATGAACTTCTTAAGCTTGTAAATAAGTATTACCCTGCAGATAGGAGGACGGCCACAACACTCATTGGTGGATCCAGAAATTTAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASCH

Protein Analysis

108

Amino Acids

11.58

Weight (kDa)

9.1

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20410 AT2G20410
fragaria_vesca	FvH4_6g02180 FvH4_6g02180
malus_domestica	MD04G1229000.v1.1 MD12G1246100.v1.1
prunus_persica	Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1
pyrus_communis	pycom04g20290
rosa_chinensis	RchiOBHm_Chr3g0449951 RchiOBHm_Chr6g0274061
rosa_laevigata	RLG00000025772 RLG00000032996
rosa_multiflora	Rmu_co8322955.1_g000001 Rmu_sc0002646.1_g000003 Rmu_sc0008674.1_g000001 Rmu_sc0008896.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427740
rosa_rugosa	Rorug02G0624200
rosa_samantha	Rh3AG023300 Rh3BG024000 Rh3CG023000 Rh3DG023800 Rh5CG297500 Rh6BG165100 Rh6CG198200 Rh6DG150800
rosa_wichuraiana	Rw3G001870 Rw6G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	77
AclI	AACGTT	1 cut(s)	144
AclWI	GGATC	3 cut(s)	101, 303, 316
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	83, 316
AcuI	CTGAAG	2 cut(s)	38, 186
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	21
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	65, 121
AluBI	AGCT	4 cut(s)	38, 203, 218, 253
AluI	AGCT	4 cut(s)	38, 203, 218, 253
Alw21I	GWGCWC	1 cut(s)	211
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	3 cut(s)	101, 303, 316
AoxI	GGCC	1 cut(s)	288
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	4 cut(s)	38, 194, 215, 218
ApoI	RAATTY	2 cut(s)	83, 316
Asp700I	GAANNNNTTC	1 cut(s)	178
Asp718I	GGTACC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	59, 126
BaeGI	GKGCMC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	4 cut(s)	25, 205, 206, 227
BceAI	ACGGC	1 cut(s)	303
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	2 cut(s)	59, 126
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	248
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	4 cut(s)	39, 195, 216, 219
BlsI	GCNGC	4 cut(s)	40, 196, 217, 220
Bme1390I	CCNGG	2 cut(s)	59, 126
BmiI	GGNNCC	2 cut(s)	6, 310
BmrFI	CCNGG	2 cut(s)	59, 126
BpuMI	CCSGG	2 cut(s)	59, 126
BsaJI	CCNNGG	2 cut(s)	57, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	57, 125
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	4 cut(s)	25, 205, 206, 227
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	59, 125
BslI	CCNNNNNNNGG	1 cut(s)	21
BsnI	GGCC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	4 cut(s)	106, 148, 176, 308
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	6, 310
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	3 cut(s)	101, 303, 316
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	57, 125
BssMI	GATC	4 cut(s)	106, 148, 176, 308
Bst6I	CTCTTC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	248
BstKTI	GATC	4 cut(s)	109, 151, 179, 311
BstMBI	GATC	4 cut(s)	106, 148, 176, 308
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 215
BstSCI	CCNGG	2 cut(s)	57, 124
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	4 cut(s)	25, 205, 206, 227
BstX2I	RGATCY	3 cut(s)	106, 176, 308
BstYI	RGATCY	3 cut(s)	106, 176, 308
BsuRI	GGCC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	5
CviJI	RGCY	8 cut(s)	14, 38, 124, 197, 203, 218, 253, 290
CviKI_1	RGCY	8 cut(s)	14, 38, 124, 197, 203, 218, 253, 290
CviQI	GTAC	1 cut(s)	5
DpnI	GATC	4 cut(s)	108, 150, 178, 310
DpnII	GATC	4 cut(s)	106, 148, 176, 308
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco57I	CTGAAG	2 cut(s)	38, 186
FaiI	YATR	4 cut(s)	31, 33, 134, 200
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	39, 195, 216, 219
Fsp4HI	GCNGC	4 cut(s)	39, 195, 216, 219
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	4 cut(s)	39, 195, 216, 219
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	2 cut(s)	59, 125
HindIII	AAGCTT	1 cut(s)	251
HpaII	CCGG	2 cut(s)	59, 125
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	156, 312
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	140, 194, 209, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 215
HpySE526I	ACGT	1 cut(s)	144
KpnI	GGTACC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	4 cut(s)	106, 148, 176, 308
LpnPI	CCDG	5 cut(s)	29, 72, 138, 189, 285
Lsp1109I	GCAGC	4 cut(s)	25, 205, 206, 227
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	144
MalI	GATC	4 cut(s)	108, 150, 178, 310
MboI	GATC	4 cut(s)	106, 148, 176, 308
MboII	GAAGA	3 cut(s)	171, 179, 186
MflI	RGATCY	3 cut(s)	106, 176, 308
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	2 cut(s)	83, 316
MnlI	CCTC	4 cut(s)	41, 81, 163, 276
MroXI	GAANNNNTTC	1 cut(s)	178
MseI	TTAA	4 cut(s)	81, 249, 320, 325
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	218
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	2 cut(s)	59, 125
MspR9I	CCNGG	2 cut(s)	59, 126
MwoI	GCNNNNNNNGC	2 cut(s)	200, 215
NciI	CCSGG	2 cut(s)	59, 126
NdeII	GATC	4 cut(s)	106, 148, 176, 308
NlaIV	GGNNCC	2 cut(s)	6, 310
PdmI	GAANNNNTTC	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	40, 196, 217, 220
Psp1406I	AACGTT	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	6, 310
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	3 cut(s)	106, 176, 308
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	81, 249, 320, 325
SatI	GCNGC	4 cut(s)	39, 195, 216, 219
Sau3AI	GATC	4 cut(s)	106, 148, 176, 308
ScrFI	CCNGG	2 cut(s)	59, 126
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	7 cut(s)	10, 40, 52, 147, 205, 220, 255
SfcI	CTRYAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	83, 316
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	57, 124
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	182
TasI	AATT	2 cut(s)	83, 316
Tru1I	TTAA	4 cut(s)	81, 249, 320, 325
Tru9I	TTAA	4 cut(s)	81, 249, 320, 325
TseI	GCWGC	4 cut(s)	38, 194, 215, 218
TspDTI	ATGAA	2 cut(s)	48, 255
Vha464I	CTTAAG	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	207
XapI	RAATTY	2 cut(s)	83, 316
XbaI	TCTAGA	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.