Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002815

Physical Location & Seq

Genomic Coordinates Forward (+)

26740781 .. 26745357

Gene Structure 4577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG165100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGTCCTGTCCAGGAGGGCGACATCCTCACCCTGCTCGAGTGCGGCTAGAAGCACAAAACAATATGTGTTAGCTTTGCGAGCAGCCACAGATGAGAATGAACTTCTTAAGCTTGTAAATAAGTATTACCCTGCAGATAGGTTAATGTCTTTTCTATATCAGATTTATATAACATATGCGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

61

Amino Acids

6.97

Weight (kDa)

9.52

Isoelectric Point (pI)

64.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20410 AT2G20410
fragaria_vesca	FvH4_6g02180 FvH4_6g02180
malus_domestica	MD04G1229000.v1.1 MD12G1246100.v1.1
prunus_persica	Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1
pyrus_communis	pycom04g20290
rosa_chinensis	RchiOBHm_Chr3g0449951 RchiOBHm_Chr6g0274061
rosa_laevigata	RLG00000025772 RLG00000032996
rosa_multiflora	Rmu_co8322955.1_g000001 Rmu_sc0002646.1_g000003 Rmu_sc0008674.1_g000001 Rmu_sc0008896.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427740
rosa_rugosa	Rorug02G0624200
rosa_samantha	Rh3AG023300 Rh3BG024000 Rh3CG023000 Rh3DG023800 Rh5CG297500 Rh6BG165100 Rh6CG198200 Rh6DG150800
rosa_wichuraiana	Rw3G001870 Rw6G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AflII	CTTAAG	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	74, 112
AluI	AGCT	2 cut(s)	74, 112
Ama87I	CYCGRG	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	21
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	13
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	132
BfrI	CTTAAG	1 cut(s)	107
BisI	GCNGC	2 cut(s)	45, 84
BlsI	GCNGC	2 cut(s)	46, 85
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	37
BspACI	CCGC	1 cut(s)	44
BspMAI	CTGCAG	1 cut(s)	136
BspTI	CTTAAG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	13
BstAFI	CTTAAG	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	81
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	4 cut(s)	47, 74, 86, 112
CviKI_1	RGCY	4 cut(s)	47, 74, 86, 112
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	11
FaiI	YATR	7 cut(s)	66, 157, 168, 170, 175, 177, 184
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	45, 84
FokI	GGATG	1 cut(s)	10
Fsp4HI	GCNGC	2 cut(s)	45, 84
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	2 cut(s)	45, 84
HhaI	GCGC	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	110
HphI	GGTGA	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HspAI	GCGC	1 cut(s)	179
LpnPI	CCDG	4 cut(s)	20, 25, 46, 144
Lsp1109I	GCAGC	1 cut(s)	95
MaeI	CTAG	1 cut(s)	48
MnlI	CCTC	2 cut(s)	9, 37
MseI	TTAA	2 cut(s)	108, 143
MspCI	CTTAAG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeI	CATATG	1 cut(s)	175
PaeR7I	CTCGAG	1 cut(s)	37
PfoI	TCCNGGA	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	46, 85
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	108, 143
SatI	GCNGC	2 cut(s)	45, 84
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	3 cut(s)	76, 114, 143
SfcI	CTRYAG	1 cut(s)	132
Sfr274I	CTCGAG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	37
SmlI	CTYRAG	2 cut(s)	37, 107
SmoI	CTYRAG	2 cut(s)	37, 107
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	11
TaqI	TCGA	1 cut(s)	38
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	2 cut(s)	108, 143
Tru9I	TTAA	2 cut(s)	108, 143
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	114
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	37
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.