Rh3DG023800

ASCH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002815
Physical Location & Seq
Forward (+)
1571236 .. 1574447
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG023800.1

Sequence Viewer

Length: 1026 bp
ATGCAGAAACTGTTAATTCCGTTTGAGATGCGTGGCTACCAAGGTGTCTATAACTTGGAAAAGAAGATATATGAAGCTGCTATTAGAGGTCTCACCCCGGTTGAAGTTCCTCTCCCAGTTAAATTTCCACTTCCAAATCCACAAGATCCATTTTCCTTGAAGCCAGGGTCTATATCTGCAAACGTTGATCAATCTAGAACATCTGAAGCGGGAAGATCTTCGAGTCTCAATGCAGCTATAGCTGGTGCACGAGCAGCTGCTACACAGTTCTCCAAAAAACCTCAAACTTTCCCAACTACCTCCCTAAATGATGCAGCCAAATCTGTGACAGTTCCAATCAAGAGTGAATCTTTTGAAGGAGGAAGAGCAATGACCGGTAATTTCAGTGAGAGCTCCAACAAAGAGTCAATGACATCAAATAACAAAGATCAAATCAGCAGCCGTAATCAACCTTCTTCTGGAGCTATTAGACCTCATCCTGGTGCACCTTCTAAGATATATGAAGCAGCTATTAGAGGTCTTACCCCTGTTGAAGTTCCCCTTAAAGTCAAATTTCCAGTTCCAAATCCAGAAGATCCATTTTCCTTGAAGCCAGGATTTATATCTGCTAATGTCGATCAATCTAGAACATCTGAAGTGGTAAGATCTTCTAGTCTCAATACAGCCATAGCTGGTGCACAAGCAGCTGATACACAGTTCTCCAAAAAAACTCAAACTTTCCCAACTACCTCCCTAAATAATGCCGCGGAATCTGTGATGACAGTTCCAATCAGGAGTGAGTCTTCTGAAGTGGGTAAAGTGACGTCTGCTAATTTTATTGAGAGTTCTAATAAGAGGTCTATGACATCAAATAACAAAGATCAAATCAGCAGAGGTGATCAACCTTCTTCTGGAGCTTTTAGACCTCATCCTGGTGCACCTTCTAAGGTACGTAGTTTCTTCTCTTGGAATTGCATAAATATATGTGAAATTGTGAATAATCAAGTGCATGTACACATGGGTTTCCATATTAAGAATTGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ASCH

Protein Analysis

341

Amino Acids

36.67

Weight (kDa)

9.61

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 806
AccII CGCG 1 cut(s) 746
AciI CCGC 3 cut(s) 209, 744, 746
AclI AACGTT 1 cut(s) 183
AclWI GGATC 2 cut(s) 140, 569
AcsI RAATTY 2 cut(s) 122, 551
AcuI CTGAAG 3 cut(s) 225, 654, 807
AcyI GRCGYC 1 cut(s) 803
AfaI GTAC 2 cut(s) 930, 993
AfiI CCNNNNNNNGG 4 cut(s) 458, 479, 890, 911
AgeI ACCGGT 1 cut(s) 374
AgsI TTSAA 5 cut(s) 104, 160, 356, 533, 589
AjnI CCWGG 4 cut(s) 163, 478, 592, 910
Alw21I GWGCWC 5 cut(s) 250, 395, 487, 679, 919
Alw26I GTCTC 3 cut(s) 95, 230, 659
Alw44I GTGCAC 4 cut(s) 246, 483, 675, 915
AlwI GGATC 2 cut(s) 140, 569
AlwNI CAGNNNCTG 1 cut(s) 10
ApaLI GTGCAC 4 cut(s) 246, 483, 675, 915
ApeKI GCWGC 8 cut(s) 77, 233, 254, 257, 314, 438, 506, 683
ApoI RAATTY 2 cut(s) 122, 551
AsiGI ACCGGT 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 85, 887
BaeGI GKGCMC 4 cut(s) 250, 487, 679, 919
BanII GRGCYC 1 cut(s) 395
BarI GAAGNNNNNNTAC 2 cut(s) 436, 468
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 774
Bbv12I GWGCWC 5 cut(s) 250, 395, 487, 679, 919
BbvI GCAGC 8 cut(s) 64, 244, 245, 266, 326, 450, 518, 695
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 4 cut(s) 165, 480, 594, 912
BclI TGATCA 2 cut(s) 187, 877
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 3 cut(s) 95, 230, 659
BfaI CTAG 3 cut(s) 195, 624, 651
BfmI CTRYAG 1 cut(s) 237
BglII AGATCT 2 cut(s) 215, 644
BisI GCNGC 9 cut(s) 78, 234, 255, 258, 315, 439, 507, 684, 744
BlsI GCNGC 9 cut(s) 79, 235, 256, 259, 316, 440, 508, 685, 745
Bme1390I CCNGG 5 cut(s) 98, 165, 480, 594, 912
BmrFI CCNGG 5 cut(s) 98, 165, 480, 594, 912
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 18, 301
BmuI ACTGGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 774
BpmI CTGGAG 2 cut(s) 480, 912
BpuMI CCSGG 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 932
BsaBI GATNNNNATC 1 cut(s) 601
BsaHI GRCGYC 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 4 cut(s) 40, 96, 164, 744
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 4 cut(s) 458, 479, 890, 911
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 116, 557
Bse3DI GCAATG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 601
BseBI CCWGG 4 cut(s) 165, 480, 594, 912
BseDI CCNNGG 4 cut(s) 40, 96, 164, 744
BseGI GGATG 2 cut(s) 475, 907
BseJI GATNNNNATC 1 cut(s) 601
BseLI CCNNNNNNNGG 4 cut(s) 458, 479, 890, 911
BseMI GCAATG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 116, 557
BseSI GKGCMC 4 cut(s) 250, 487, 679, 919
BseXI GCAGC 8 cut(s) 64, 244, 245, 266, 326, 450, 518, 695
Bsh1236I CGCG 1 cut(s) 746
BshTI ACCGGT 1 cut(s) 374
BsiHKAI GWGCWC 5 cut(s) 250, 395, 487, 679, 919
BsiSI CCGG 2 cut(s) 98, 375
BslI CCNNNNNNNGG 4 cut(s) 458, 479, 890, 911
BsmAI GTCTC 3 cut(s) 95, 230, 659
Bso31I GGTCTC 1 cut(s) 95
Bsp1286I GDGCHC 5 cut(s) 250, 395, 487, 679, 919
Bsp1407I TGTACA 1 cut(s) 991
Bsp143I GATC 9 cut(s) 145, 187, 215, 427, 574, 616, 644, 859, 877
BspACI CCGC 3 cut(s) 209, 744, 746
BspFNI CGCG 1 cut(s) 746
BspPI GGATC 2 cut(s) 140, 569
BspQI GCTCTTC 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 374
BsrGI TGTACA 1 cut(s) 991
BsrI ACTGG 2 cut(s) 116, 557
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 4 cut(s) 40, 96, 164, 744
BssMI GATC 9 cut(s) 145, 187, 215, 427, 574, 616, 644, 859, 877
BssNI GRCGYC 1 cut(s) 803
BssSI CACGAG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 4 cut(s) 165, 480, 594, 912
Bst4CI ACNGT 5 cut(s) 12, 267, 331, 696, 763
Bst6I CTCTTC 1 cut(s) 358
BstACI GRCGYC 1 cut(s) 803
BstAUI TGTACA 1 cut(s) 991
BstBAI YACGTR 1 cut(s) 932
BstDEI CTNAG 2 cut(s) 492, 924
BstDSI CCRYGG 1 cut(s) 744
BstF5I GGATG 2 cut(s) 475, 907
BstFNI CGCG 1 cut(s) 746
BstKTI GATC 9 cut(s) 148, 190, 218, 430, 577, 619, 647, 862, 880
BstMAI GTCTC 3 cut(s) 95, 230, 659
BstMBI GATC 9 cut(s) 145, 187, 215, 427, 574, 616, 644, 859, 877
BstMWI GCNNNNNNNGC 3 cut(s) 239, 254, 683
BstNI CCWGG 4 cut(s) 165, 480, 594, 912
BstNSI RCATGY 1 cut(s) 992
BstSCI CCNGG 5 cut(s) 96, 163, 478, 592, 910
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 4 cut(s) 250, 487, 679, 919
BstSNI TACGTA 1 cut(s) 932
BstUI CGCG 1 cut(s) 746
BstV1I GCAGC 8 cut(s) 64, 244, 245, 266, 326, 450, 518, 695
BstV2I GAAGAC 1 cut(s) 774
BstX2I RGATCY 4 cut(s) 145, 215, 574, 644
BstYI RGATCY 4 cut(s) 145, 215, 574, 644
BtgI CCRYGG 1 cut(s) 744
BtsCI GGATG 2 cut(s) 475, 907
BtsIMutI CAGTG 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 374
Cfr42I CCGCGG 1 cut(s) 747
Csp6I GTAC 2 cut(s) 929, 992
CspAI ACCGGT 1 cut(s) 374
CviAII CATG 2 cut(s) 989, 997
CviQI GTAC 2 cut(s) 929, 992
DdeI CTNAG 2 cut(s) 492, 924
DpnI GATC 9 cut(s) 147, 189, 217, 429, 576, 618, 646, 861, 879
DpnII GATC 9 cut(s) 145, 187, 215, 427, 574, 616, 644, 859, 877
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
Ecl136II GAGCTC 1 cut(s) 393
Eco105I TACGTA 1 cut(s) 932
Eco130I CCWWGG 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 393
Eco57I CTGAAG 3 cut(s) 225, 654, 807
EcoICRI GAGCTC 1 cut(s) 393
EcoRII CCWGG 4 cut(s) 163, 478, 592, 910
EcoT14I CCWWGG 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 2 cut(s) 992, 1000
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 2 cut(s) 988, 996
FauI CCCGC 1 cut(s) 202
FbaI TGATCA 2 cut(s) 187, 877
Fnu4HI GCNGC 9 cut(s) 78, 234, 255, 258, 315, 439, 507, 684, 744
FokI GGATG 2 cut(s) 462, 894
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 9 cut(s) 78, 234, 255, 258, 315, 439, 507, 684, 744
FspBI CTAG 3 cut(s) 195, 624, 651
GluI GCNGC 9 cut(s) 78, 234, 255, 258, 315, 439, 507, 684, 744
GsuI CTGGAG 2 cut(s) 480, 912
HapII CCGG 2 cut(s) 98, 375
Hin1I GRCGYC 1 cut(s) 803
Hin1II CATG 2 cut(s) 992, 1000
HinfI GANTC 5 cut(s) 223, 347, 404, 749, 779
HpaII CCGG 2 cut(s) 98, 375
HphI GGTGA 2 cut(s) 85, 887
Hpy166II GTNNAC 5 cut(s) 248, 485, 677, 917, 994
Hpy188I TCNGA 3 cut(s) 205, 634, 787
Hpy188III TCNNGA 7 cut(s) 195, 340, 459, 569, 624, 772, 891
Hpy8I GTNNAC 5 cut(s) 248, 485, 677, 917, 994
HpyAV CCTTC 5 cut(s) 350, 462, 498, 894, 930
HpyCH4III ACNGT 5 cut(s) 12, 267, 331, 696, 763
HpyCH4IV ACGT 3 cut(s) 183, 803, 931
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 254, 683
HpyF3I CTNAG 2 cut(s) 492, 924
HpySE526I ACGT 3 cut(s) 183, 803, 931
Hsp92I GRCGYC 1 cut(s) 803
Hsp92II CATG 2 cut(s) 992, 1000
Ksp22I TGATCA 2 cut(s) 187, 877
KspI CCGCGG 1 cut(s) 747
Kzo9I GATC 9 cut(s) 145, 187, 215, 427, 574, 616, 644, 859, 877
LguI GCTCTTC 1 cut(s) 358
LmnI GCTCC 3 cut(s) 398, 461, 893
Lsp1109I GCAGC 8 cut(s) 64, 244, 245, 266, 326, 450, 518, 695
LweI GCATC 2 cut(s) 18, 301
MaeI CTAG 3 cut(s) 195, 624, 651
MaeII ACGT 3 cut(s) 183, 803, 931
MaeIII GTNAC 2 cut(s) 325, 799
MalI GATC 9 cut(s) 147, 189, 217, 429, 576, 618, 646, 861, 879
MboI GATC 9 cut(s) 145, 187, 215, 427, 574, 616, 644, 859, 877
MflI RGATCY 4 cut(s) 145, 215, 574, 644
MhlI GDGCHC 5 cut(s) 250, 395, 487, 679, 919
MluCI AATT 8 cut(s) 15, 122, 379, 551, 811, 949, 969, 1015
MlyI GAGTC 3 cut(s) 232, 413, 788
MmeI TCCRAC 1 cut(s) 420
MroXI GAANNNNTTC 1 cut(s) 217
MseI TTAA 4 cut(s) 14, 120, 543, 1011
MslI CAYNNNNRTG 2 cut(s) 480, 912
MspA1I CMGCKG 3 cut(s) 257, 686, 746
MspI CCGG 2 cut(s) 98, 375
MspR9I CCNGG 5 cut(s) 98, 165, 480, 594, 912
MvaI CCWGG 4 cut(s) 165, 480, 594, 912
MvnI CGCG 1 cut(s) 746
MwoI GCNNNNNNNGC 3 cut(s) 239, 254, 683
NciI CCSGG 1 cut(s) 98
NdeII GATC 9 cut(s) 145, 187, 215, 427, 574, 616, 644, 859, 877
NlaIII CATG 2 cut(s) 992, 1000
NmuCI GTSAC 2 cut(s) 325, 799
NspI RCATGY 1 cut(s) 992
PciSI GCTCTTC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 347, 749
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 9 cut(s) 79, 235, 256, 259, 316, 440, 508, 685, 745
PleI GAGTC 3 cut(s) 231, 412, 787
PpsI GAGTC 3 cut(s) 231, 412, 787
Ppu21I YACGTR 1 cut(s) 932
Psp124BI GAGCTC 1 cut(s) 395
Psp1406I AACGTT 1 cut(s) 183
Psp6I CCWGG 4 cut(s) 163, 478, 592, 910
PspGI CCWGG 4 cut(s) 163, 478, 592, 910
PstNI CAGNNNCTG 1 cut(s) 10
PsuI RGATCY 4 cut(s) 145, 215, 574, 644
PvuII CAGCTG 2 cut(s) 257, 686
RsaI GTAC 2 cut(s) 930, 993
RsaNI GTAC 2 cut(s) 929, 992
RseI CAYNNNNRTG 2 cut(s) 480, 912
SacI GAGCTC 1 cut(s) 395
SacII CCGCGG 1 cut(s) 747
SapI GCTCTTC 1 cut(s) 358
SaqAI TTAA 4 cut(s) 14, 120, 543, 1011
SatI GCNGC 9 cut(s) 78, 234, 255, 258, 315, 439, 507, 684, 744
Sau3AI GATC 9 cut(s) 145, 187, 215, 427, 574, 616, 644, 859, 877
SchI GAGTC 3 cut(s) 232, 413, 788
ScrFI CCNGG 5 cut(s) 98, 165, 480, 594, 912
SduI GDGCHC 5 cut(s) 250, 395, 487, 679, 919
SfaNI GCATC 2 cut(s) 18, 301
SfcI CTRYAG 1 cut(s) 237
Sfr303I CCGCGG 1 cut(s) 747
SgrBI CCGCGG 1 cut(s) 747
SmiMI CAYNNNNRTG 2 cut(s) 480, 912
SnaBI TACGTA 1 cut(s) 932
Sse9I AATT 8 cut(s) 15, 122, 379, 551, 811, 949, 969, 1015
SsiI CCGC 3 cut(s) 209, 744, 746
SspMI CTAG 3 cut(s) 195, 624, 651
SstI GAGCTC 1 cut(s) 395
StyD4I CCNGG 5 cut(s) 96, 163, 478, 592, 910
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 5 cut(s) 12, 267, 331, 696, 763
TaiI ACGT 3 cut(s) 186, 806, 934
TaqI TCGA 2 cut(s) 221, 615
TasI AATT 8 cut(s) 15, 122, 379, 551, 811, 949, 969, 1015
TatI WGTACW 1 cut(s) 991
TauI GCSGC 1 cut(s) 746
TfiI GAWTC 2 cut(s) 347, 749
Tru1I TTAA 4 cut(s) 14, 120, 543, 1011
Tru9I TTAA 4 cut(s) 14, 120, 543, 1011
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 2 cut(s) 325, 799
TseI GCWGC 8 cut(s) 77, 233, 254, 257, 314, 438, 506, 683
Tsp45I GTSAC 2 cut(s) 325, 799
TspDTI ATGAA 2 cut(s) 87, 516
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 1 cut(s) 391
VneI GTGCAC 4 cut(s) 246, 483, 675, 915
XapI RAATTY 2 cut(s) 122, 551
XbaI TCTAGA 2 cut(s) 194, 623
XceI RCATGY 1 cut(s) 992
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 3 cut(s) 195, 624, 651
ZraI GACGTC 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.