Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008674.1

Orthogroup ID

OG0002815

Physical Location & Seq

Genomic Coordinates Forward (+)

169 .. 3581

Gene Structure 3413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008674.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1785 bp

atgagaagaggaggaggttcttcagggaattacagaaacccatgtctgactatgcaccagccatgggcttctctgctcgtttatggtatcaaacgcatcgagggcaggtcatggcctgctcccattagaggacgtctttggattcatgctgctggtaaggttccagaggaggctacaatcaaagcaatggaggatttctatcgggaaatttatgcggtggatggagtcactgatatcaaatttccccaacactatccagtttcaagactgctagggtgtgttgaagtagttggatgtgttagacgcgaagagttagctggttgggagatggttcctgaaggggtgaggctggaagcacaaaccgatatgtgttggctttgtgagcagccacagaaactgttaattccgtttgagatgcgtggctaccaaggtgtctataacttggaaaagaagatatatgaagctgctattagaggtctcaccccggttgaagttcctctcccagttaaatttccacttccaaatccacaagatccattttccttgaagccagggtctatatctgcaaacgttgatcaatctagaacatctgaagcgggaagatcttcgagtctcaatgcagctatagctggtgcacgagcagctgctacacagttctccaaaaaacctcaaactttcccaactacctccctaaatgatgcagccaaatctgtgacagttccaatcaagagtgaatcttttgaaggaggaagagcaatgaccggtaatttcagtgagagctccaacaaagagtcaatgacatcaaataacaaagatcaaatcagcagccgtaatcaaccttcttctggagctattagacctcatcctggtgcaccttctaagatatatgaagctgctattagaggtctcaccccggttgaagttcctctcccagttaaatttccacttccaaatccacaagatccattttccttgaagccagggtctatatctgcaaacgttgatcaatctagaacatctgaagcgggaagatcttcgagtctcaatgcagctatagctggtgcacgagcagctgctacacagttctccaaaaaacctcaaactttcccaactacctccctaaatgatgcagccaaatctgtgacagttccaatcaagagtgaatcttttgaaggaggaagagcaatgaccggtaatttcagtgagagctccaacaaagagtcaatgacatcaaataacaaagatcaaatcagcagccgtaatcaaccttcttctggagctattagacctcatcctggtgcaccttctaagatatatgaagcggctattagaggtcttacccctgttgaagttccccttaaagtcaaatttccagttccaaatccagaagatccattttccttgaagccaggatttatatctgctaatgtcgatcagtctagaacatctgaagtggtaagatcttctagtctcaatacagccatagctggtgcacaagcagctgatacacagttctccaaaaaaactcaaactttcccaactacctccctaaataatgccgcggaatctgtgatgacagttccaatcaggagtgagtcttctgaagtgggtaaagtgacatctgctaattttattgagagttctaataagaggtctatgacatcaaataacaaagatcaaatcagcagaggtgatcaaccttcttctggagcttttagacctcatcctggtgcaccttctaagtatgtttacgaacagaggaggcgacgagatgcccagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASCH

Protein Analysis

594

Amino Acids

64.26

Weight (kDa)

9.55

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20410 AT2G20410
fragaria_vesca	FvH4_6g02180 FvH4_6g02180
malus_domestica	MD04G1229000.v1.1 MD12G1246100.v1.1
prunus_persica	Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1
pyrus_communis	pycom04g20290
rosa_chinensis	RchiOBHm_Chr3g0449951 RchiOBHm_Chr6g0274061
rosa_laevigata	RLG00000025772 RLG00000032996
rosa_multiflora	Rmu_co8322955.1_g000001 Rmu_sc0002646.1_g000003 Rmu_sc0008674.1_g000001 Rmu_sc0008896.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427740
rosa_rugosa	Rorug02G0624200
rosa_samantha	Rh3AG023300 Rh3BG024000 Rh3CG023000 Rh3DG023800 Rh5CG297500 Rh6BG165100 Rh6CG198200 Rh6DG150800
rosa_wichuraiana	Rw3G001870 Rw6G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	96
AccII	CGCG	2 cut(s)	306, 1562
AciI	CCGC	6 cut(s)	215, 596, 1025, 1322, 1560, 1562
AclI	AACGTT	2 cut(s)	570, 999
AclWI	GGATC	3 cut(s)	527, 956, 1385
AcsI	RAATTY	5 cut(s)	207, 239, 509, 938, 1367
AcuI	CTGAAG	6 cut(s)	6, 357, 612, 1041, 1470, 1623
AcyI	GRCGYC	1 cut(s)	133
AfiI	CCNNNNNNNGG	8 cut(s)	64, 128, 845, 866, 1274, 1295, 1706, 1727
AgeI	ACCGGT	2 cut(s)	761, 1190
AjnI	CCWGG	6 cut(s)	550, 865, 979, 1294, 1408, 1726
Alw21I	GWGCWC	8 cut(s)	637, 782, 874, 1066, 1211, 1303, 1495, 1735
Alw26I	GTCTC	5 cut(s)	482, 617, 911, 1046, 1475
Alw44I	GTGCAC	6 cut(s)	633, 870, 1062, 1299, 1491, 1731
AlwI	GGATC	3 cut(s)	527, 956, 1385
AlwNI	CAGNNNCTG	1 cut(s)	397
AoxI	GGCC	1 cut(s)	113
ApaLI	GTGCAC	6 cut(s)	633, 870, 1062, 1299, 1491, 1731
ApoI	RAATTY	5 cut(s)	207, 239, 509, 938, 1367
AsiGI	ACCGGT	2 cut(s)	761, 1190
Asp700I	GAANNNNTTC	2 cut(s)	604, 1033
AsuC2I	CCSGG	2 cut(s)	485, 914
AsuHPI	GGTGA	4 cut(s)	355, 472, 901, 1703
BaeGI	GKGCMC	6 cut(s)	637, 874, 1066, 1303, 1495, 1735
BanII	GRGCYC	2 cut(s)	782, 1211
BarI	GAAGNNNNNNTAC	4 cut(s)	823, 855, 1252, 1284
BauI	CACGAG	2 cut(s)	636, 1065
BbsI	GAAGAC	1 cut(s)	1590
Bbv12I	GWGCWC	8 cut(s)	637, 782, 874, 1066, 1211, 1303, 1495, 1735
BccI	CCATC	2 cut(s)	215, 322
BceAI	ACGGC	2 cut(s)	813, 1242
BciT130I	CCWGG	6 cut(s)	552, 867, 981, 1296, 1410, 1728
BclI	TGATCA	3 cut(s)	574, 1003, 1693
BcnI	CCSGG	2 cut(s)	485, 914
BcoDI	GTCTC	5 cut(s)	482, 617, 911, 1046, 1475
BfaI	CTAG	5 cut(s)	272, 582, 1011, 1440, 1467
BfmI	CTRYAG	2 cut(s)	624, 1053
BfuAI	ACCTGC	1 cut(s)	96
BglII	AGATCT	3 cut(s)	602, 1031, 1460
Bme1390I	CCNGG	8 cut(s)	485, 552, 867, 914, 981, 1296, 1410, 1728
BmiI	GGNNCC	2 cut(s)	162, 333
BmrFI	CCNGG	8 cut(s)	485, 552, 867, 914, 981, 1296, 1410, 1728
BmrI	ACTGGG	3 cut(s)	497, 926, 1771
BmsI	GCATC	5 cut(s)	105, 405, 688, 1117, 1762
BmuI	ACTGGG	3 cut(s)	497, 926, 1771
BpiI	GAAGAC	1 cut(s)	1590
BpmI	CTGGAG	3 cut(s)	867, 1296, 1728
BpuMI	CCSGG	2 cut(s)	485, 914
BsaBI	GATNNNNATC	2 cut(s)	198, 1417
BsaHI	GRCGYC	1 cut(s)	133
BsaI	GGTCTC	2 cut(s)	482, 911
BsaJI	CCNNGG	7 cut(s)	62, 427, 483, 551, 912, 980, 1560
BsaWI	WCCGGW	2 cut(s)	761, 1190
Bsc4I	CCNNNNNNNGG	8 cut(s)	64, 128, 845, 866, 1274, 1295, 1706, 1727
Bse118I	RCCGGY	2 cut(s)	761, 1190
Bse1I	ACTGG	5 cut(s)	257, 503, 932, 1373, 1777
Bse3DI	GCAATG	3 cut(s)	192, 762, 1191
Bse8I	GATNNNNATC	2 cut(s)	198, 1417
BseBI	CCWGG	6 cut(s)	552, 867, 981, 1296, 1410, 1728
BseDI	CCNNGG	7 cut(s)	62, 427, 483, 551, 912, 980, 1560
BseGI	GGATG	5 cut(s)	226, 299, 862, 1291, 1723
BseJI	GATNNNNATC	2 cut(s)	198, 1417
BseLI	CCNNNNNNNGG	8 cut(s)	64, 128, 845, 866, 1274, 1295, 1706, 1727
BseMI	GCAATG	3 cut(s)	192, 762, 1191
BseNI	ACTGG	5 cut(s)	257, 503, 932, 1373, 1777
BseRI	GAGGAG	4 cut(s)	24, 27, 182, 1774
BseSI	GKGCMC	6 cut(s)	637, 874, 1066, 1303, 1495, 1735
Bsh1236I	CGCG	2 cut(s)	306, 1562
BshFI	GGCC	1 cut(s)	115
BshTI	ACCGGT	2 cut(s)	761, 1190
BsiHKAI	GWGCWC	8 cut(s)	637, 782, 874, 1066, 1211, 1303, 1495, 1735
BsiSI	CCGG	4 cut(s)	485, 762, 914, 1191
BslI	CCNNNNNNNGG	8 cut(s)	64, 128, 845, 866, 1274, 1295, 1706, 1727
BsmAI	GTCTC	5 cut(s)	482, 617, 911, 1046, 1475
BsnI	GGCC	1 cut(s)	115
Bso31I	GGTCTC	2 cut(s)	482, 911
Bsp1286I	GDGCHC	8 cut(s)	637, 782, 874, 1066, 1211, 1303, 1495, 1735
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	6 cut(s)	215, 596, 1025, 1322, 1560, 1562
BspANI	GGCC	1 cut(s)	115
BspFNI	CGCG	2 cut(s)	306, 1562
BspLI	GGNNCC	2 cut(s)	162, 333
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	3 cut(s)	527, 956, 1385
BspQI	GCTCTTC	2 cut(s)	745, 1174
BspTNI	GGTCTC	2 cut(s)	482, 911
BsrDI	GCAATG	3 cut(s)	192, 762, 1191
BsrFI	RCCGGY	2 cut(s)	761, 1190
BsrI	ACTGG	5 cut(s)	257, 503, 932, 1373, 1777
BssAI	RCCGGY	2 cut(s)	761, 1190
BssECI	CCNNGG	7 cut(s)	62, 427, 483, 551, 912, 980, 1560
BssNI	GRCGYC	1 cut(s)	133
BssSI	CACGAG	2 cut(s)	636, 1065
BssT1I	CCWWGG	2 cut(s)	62, 427
Bst2BI	CACGAG	2 cut(s)	636, 1065
Bst2UI	CCWGG	6 cut(s)	552, 867, 981, 1296, 1410, 1728
Bst4CI	ACNGT	7 cut(s)	399, 654, 718, 1083, 1147, 1512, 1579
Bst6I	CTCTTC	3 cut(s)	303, 745, 1174
BstACI	GRCGYC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	3 cut(s)	879, 1308, 1740
BstDSI	CCRYGG	2 cut(s)	62, 1560
BstF5I	GGATG	5 cut(s)	226, 299, 862, 1291, 1723
BstFNI	CGCG	2 cut(s)	306, 1562
BstMAI	GTCTC	5 cut(s)	482, 617, 911, 1046, 1475
BstMWI	GCNNNNNNNGC	7 cut(s)	102, 382, 626, 641, 1055, 1070, 1499
BstNI	CCWGG	6 cut(s)	552, 867, 981, 1296, 1410, 1728
BstSCI	CCNGG	8 cut(s)	483, 550, 865, 912, 979, 1294, 1408, 1726
BstSFI	CTRYAG	2 cut(s)	624, 1053
BstSLI	GKGCMC	6 cut(s)	637, 874, 1066, 1303, 1495, 1735
BstUI	CGCG	2 cut(s)	306, 1562
BstV2I	GAAGAC	1 cut(s)	1590
BstX2I	RGATCY	6 cut(s)	532, 602, 961, 1031, 1390, 1460
BstYI	RGATCY	6 cut(s)	532, 602, 961, 1031, 1390, 1460
BsuRI	GGCC	1 cut(s)	115
BtgI	CCRYGG	2 cut(s)	62, 1560
BtsCI	GGATG	5 cut(s)	226, 299, 862, 1291, 1723
BtsIMutI	CAGTG	3 cut(s)	228, 778, 1207
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	397
Cfr10I	RCCGGY	2 cut(s)	761, 1190
Cfr42I	CCGCGG	1 cut(s)	1563
CseI	GACGC	1 cut(s)	312
CspAI	ACCGGT	2 cut(s)	761, 1190
CviAII	CATG	4 cut(s)	42, 63, 111, 146
DdeI	CTNAG	3 cut(s)	879, 1308, 1740
Eam1104I	CTCTTC	3 cut(s)	303, 745, 1174
EarI	CTCTTC	3 cut(s)	303, 745, 1174
Ecl136II	GAGCTC	2 cut(s)	780, 1209
Eco130I	CCWWGG	2 cut(s)	62, 427
Eco24I	GRGCYC	2 cut(s)	782, 1211
Eco31I	GGTCTC	2 cut(s)	482, 911
Eco32I	GATATC	1 cut(s)	235
Eco53kI	GAGCTC	2 cut(s)	780, 1209
Eco57I	CTGAAG	6 cut(s)	6, 357, 612, 1041, 1470, 1623
EcoICRI	GAGCTC	2 cut(s)	780, 1209
EcoRII	CCWGG	6 cut(s)	550, 865, 979, 1294, 1408, 1726
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	62, 427
EcoT38I	GRGCYC	2 cut(s)	782, 1211
ErhI	CCWWGG	2 cut(s)	62, 427
FaeI	CATG	4 cut(s)	45, 66, 114, 149
FalI	AAGNNNNNCTT	2 cut(s)	1341, 1373
FatI	CATG	4 cut(s)	41, 62, 110, 145
FauI	CCCGC	2 cut(s)	589, 1018
FbaI	TGATCA	3 cut(s)	574, 1003, 1693
FokI	GGATG	5 cut(s)	233, 306, 849, 1278, 1710
FriOI	GRGCYC	2 cut(s)	782, 1211
FspBI	CTAG	5 cut(s)	272, 582, 1011, 1440, 1467
GsuI	CTGGAG	3 cut(s)	867, 1296, 1728
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	4 cut(s)	485, 762, 914, 1191
HgaI	GACGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	133
Hin1II	CATG	4 cut(s)	45, 66, 114, 149
HpaII	CCGG	4 cut(s)	485, 762, 914, 1191
HphI	GGTGA	4 cut(s)	355, 472, 901, 1703
Hpy166II	GTNNAC	7 cut(s)	635, 872, 1064, 1301, 1493, 1733, 1750
Hpy188I	TCNGA	5 cut(s)	48, 592, 1021, 1450, 1603
Hpy8I	GTNNAC	7 cut(s)	635, 872, 1064, 1301, 1493, 1733, 1750
Hpy99I	CGWCG	1 cut(s)	1770
HpyAV	CCTTC	9 cut(s)	332, 737, 849, 885, 1166, 1278, 1314, 1710, 1746
HpyCH4III	ACNGT	7 cut(s)	399, 654, 718, 1083, 1147, 1512, 1579
HpyCH4IV	ACGT	3 cut(s)	133, 570, 999
HpyF10VI	GCNNNNNNNGC	7 cut(s)	102, 382, 626, 641, 1055, 1070, 1499
HpyF3I	CTNAG	3 cut(s)	879, 1308, 1740
HpySE526I	ACGT	3 cut(s)	133, 570, 999
Hsp92I	GRCGYC	1 cut(s)	133
Hsp92II	CATG	4 cut(s)	45, 66, 114, 149
Ksp22I	TGATCA	3 cut(s)	574, 1003, 1693
KspI	CCGCGG	1 cut(s)	1563
LguI	GCTCTTC	2 cut(s)	745, 1174
LmnI	GCTCC	6 cut(s)	124, 785, 848, 1214, 1277, 1709
LweI	GCATC	5 cut(s)	105, 405, 688, 1117, 1762
MaeI	CTAG	5 cut(s)	272, 582, 1011, 1440, 1467
MaeII	ACGT	3 cut(s)	133, 570, 999
MaeIII	GTNAC	4 cut(s)	226, 712, 1141, 1615
MflI	RGATCY	6 cut(s)	532, 602, 961, 1031, 1390, 1460
MhlI	GDGCHC	8 cut(s)	637, 782, 874, 1066, 1211, 1303, 1495, 1735
MlyI	GAGTC	6 cut(s)	234, 619, 800, 1048, 1229, 1604
MmeI	TCCRAC	3 cut(s)	271, 807, 1236
MroXI	GAANNNNTTC	2 cut(s)	604, 1033
MseI	TTAA	4 cut(s)	401, 507, 936, 1359
MslI	CAYNNNNRTG	3 cut(s)	867, 1296, 1728
MspA1I	CMGCKG	4 cut(s)	644, 1073, 1502, 1562
MspI	CCGG	4 cut(s)	485, 762, 914, 1191
MspR9I	CCNGG	8 cut(s)	485, 552, 867, 914, 981, 1296, 1410, 1728
MvaI	CCWGG	6 cut(s)	552, 867, 981, 1296, 1410, 1728
MvnI	CGCG	2 cut(s)	306, 1562
MwoI	GCNNNNNNNGC	7 cut(s)	102, 382, 626, 641, 1055, 1070, 1499
NciI	CCSGG	2 cut(s)	485, 914
NcoI	CCATGG	1 cut(s)	62
NlaIII	CATG	4 cut(s)	45, 66, 114, 149
NlaIV	GGNNCC	2 cut(s)	162, 333
NmuCI	GTSAC	4 cut(s)	226, 712, 1141, 1615
PciSI	GCTCTTC	2 cut(s)	745, 1174
PdmI	GAANNNNTTC	2 cut(s)	604, 1033
PfeI	GAWTC	4 cut(s)	142, 734, 1163, 1565
PinAI	ACCGGT	2 cut(s)	761, 1190
PleI	GAGTC	6 cut(s)	233, 618, 799, 1047, 1228, 1603
PpsI	GAGTC	6 cut(s)	233, 618, 799, 1047, 1228, 1603
Psp124BI	GAGCTC	2 cut(s)	782, 1211
Psp1406I	AACGTT	2 cut(s)	570, 999
Psp6I	CCWGG	6 cut(s)	550, 865, 979, 1294, 1408, 1726
PspGI	CCWGG	6 cut(s)	550, 865, 979, 1294, 1408, 1726
PspN4I	GGNNCC	2 cut(s)	162, 333
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	6 cut(s)	532, 602, 961, 1031, 1390, 1460
PvuII	CAGCTG	3 cut(s)	644, 1073, 1502
RseI	CAYNNNNRTG	3 cut(s)	867, 1296, 1728
SacI	GAGCTC	2 cut(s)	782, 1211
SacII	CCGCGG	1 cut(s)	1563
SapI	GCTCTTC	2 cut(s)	745, 1174
SaqAI	TTAA	4 cut(s)	401, 507, 936, 1359
SchI	GAGTC	6 cut(s)	234, 619, 800, 1048, 1229, 1604
ScrFI	CCNGG	8 cut(s)	485, 552, 867, 914, 981, 1296, 1410, 1728
SduI	GDGCHC	8 cut(s)	637, 782, 874, 1066, 1211, 1303, 1495, 1735
SfaNI	GCATC	5 cut(s)	105, 405, 688, 1117, 1762
SfcI	CTRYAG	2 cut(s)	624, 1053
Sfr303I	CCGCGG	1 cut(s)	1563
SgrBI	CCGCGG	1 cut(s)	1563
SmiMI	CAYNNNNRTG	3 cut(s)	867, 1296, 1728
SsiI	CCGC	6 cut(s)	215, 596, 1025, 1322, 1560, 1562
SspMI	CTAG	5 cut(s)	272, 582, 1011, 1440, 1467
SstI	GAGCTC	2 cut(s)	782, 1211
StyD4I	CCNGG	8 cut(s)	483, 550, 865, 912, 979, 1294, 1408, 1726
StyI	CCWWGG	2 cut(s)	62, 427
TaaI	ACNGT	7 cut(s)	399, 654, 718, 1083, 1147, 1512, 1579
TaiI	ACGT	3 cut(s)	136, 573, 1002
TaqI	TCGA	4 cut(s)	99, 608, 1037, 1431
TauI	GCSGC	2 cut(s)	1325, 1562
TfiI	GAWTC	4 cut(s)	142, 734, 1163, 1565
Tru1I	TTAA	4 cut(s)	401, 507, 936, 1359
Tru9I	TTAA	4 cut(s)	401, 507, 936, 1359
TscAI	CASTG	3 cut(s)	235, 778, 1207
TseFI	GTSAC	4 cut(s)	226, 712, 1141, 1615
Tsp45I	GTSAC	4 cut(s)	226, 712, 1141, 1615
TspDTI	ATGAA	4 cut(s)	134, 474, 903, 1332
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	3 cut(s)	235, 778, 1207
VneI	GTGCAC	6 cut(s)	633, 870, 1062, 1299, 1491, 1731
XapI	RAATTY	5 cut(s)	207, 239, 509, 938, 1367
XbaI	TCTAGA	3 cut(s)	581, 1010, 1439
XmnI	GAANNNNTTC	2 cut(s)	604, 1033
XspI	CTAG	5 cut(s)	272, 582, 1011, 1440, 1467
ZraI	GACGTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.