RLG00000032996

ASCH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002815
Physical Location & Seq
Forward (+)
21904623 .. 21906398
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032996

Sequence Viewer

Length: 510 bp
ATGGGACAAGTGCACAAAGTAGAGTTGTCGAGTACATGGTACAGATACCTGAGACGCGAAGAGTTAGCTGGTTGGGAGATGGTGCGGCTAGAAGCACAAACCGATATGTGTAGGCTTTGCGAGCACCCACAGAAACTGTTGATGCTGTTCGAGATGCGTGGCTACCAAGGTGTCTATAACTTGGAAAAGAAGCTGCTATTAGAGGTCTCACCACGGTTGAAGTTTCTATTTCCACTTCCAAATCCACAAGATCCATTTTCCTTGAAGCCGGGGTCTATATCTGCAAACGTTGATCAATCTAGAACATCTGAAGCGGGAAGATCTTCGAGTCTCAATGCAGCCATAGCTGGTGCACGAGCAGCTGCTACACAGTTCTCCAAAAAAGCTCAAACTTTCCCAACTACCTCCGTAAATGATGCAGCCAAATCTGTGACAGTTCCAATCAAGAGTGAATCTTTTGAACGGGGTAGAGCAATGACCGGTAATTTCAGTGAGAGCAATGACCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ASCH

Protein Analysis

170

Amino Acids

18.96

Weight (kDa)

9.36

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AciI CCGC 2 cut(s) 85, 314
AclI AACGTT 1 cut(s) 288
AclWI GGATC 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 2 cut(s) 34, 41
AgeI ACCGGT 2 cut(s) 479, 504
AgsI TTSAA 3 cut(s) 220, 265, 461
AluBI AGCT 5 cut(s) 68, 193, 347, 362, 386
AluI AGCT 5 cut(s) 68, 193, 347, 362, 386
Alw21I GWGCWC 3 cut(s) 15, 126, 355
Alw26I GTCTC 3 cut(s) 46, 211, 335
Alw44I GTGCAC 2 cut(s) 11, 351
AlwI GGATC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 136
ApaLI GTGCAC 2 cut(s) 11, 351
ApeKI GCWGC 5 cut(s) 193, 338, 359, 362, 419
AsiGI ACCGGT 2 cut(s) 479, 504
Asp700I GAANNNNTTC 1 cut(s) 322
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 201
BaeGI GKGCMC 2 cut(s) 15, 355
BauI CACGAG 1 cut(s) 354
Bbv12I GWGCWC 3 cut(s) 15, 126, 355
BbvI GCAGC 5 cut(s) 180, 349, 350, 371, 431
BccI CCATC 1 cut(s) 73
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 3 cut(s) 46, 211, 335
BfaI CTAG 2 cut(s) 89, 300
BglII AGATCT 1 cut(s) 320
BisI GCNGC 6 cut(s) 86, 194, 339, 360, 363, 420
BlsI GCNGC 6 cut(s) 87, 195, 340, 361, 364, 421
Bme1390I CCNGG 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 3 cut(s) 132, 144, 406
BpuMI CCSGG 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 211
BsaJI CCNNGG 3 cut(s) 166, 212, 269
BsaWI WCCGGW 2 cut(s) 479, 504
Bse118I RCCGGY 2 cut(s) 479, 504
Bse3DI GCAATG 2 cut(s) 480, 505
BseDI CCNNGG 3 cut(s) 166, 212, 269
BseMI GCAATG 2 cut(s) 480, 505
BseMII CTCAG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 15, 355
BseXI GCAGC 5 cut(s) 180, 349, 350, 371, 431
Bsh1236I CGCG 1 cut(s) 57
BshTI ACCGGT 2 cut(s) 479, 504
BsiHKAI GWGCWC 3 cut(s) 15, 126, 355
BsiSI CCGG 3 cut(s) 269, 480, 505
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 3 cut(s) 46, 211, 335
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 211
Bsp1286I GDGCHC 3 cut(s) 15, 126, 355
Bsp143I GATC 3 cut(s) 250, 292, 320
BspACI CCGC 2 cut(s) 85, 314
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 1 cut(s) 57
BspPI GGATC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 211
BsrDI GCAATG 2 cut(s) 480, 505
BsrFI RCCGGY 2 cut(s) 479, 504
BssAI RCCGGY 2 cut(s) 479, 504
BssECI CCNNGG 3 cut(s) 166, 212, 269
BssMI GATC 3 cut(s) 250, 292, 320
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 166
Bst2BI CACGAG 1 cut(s) 354
Bst4CI ACNGT 4 cut(s) 138, 216, 372, 436
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 212
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 3 cut(s) 253, 295, 323
BstMAI GTCTC 3 cut(s) 46, 211, 335
BstMBI GATC 3 cut(s) 250, 292, 320
BstMWI GCNNNNNNNGC 3 cut(s) 121, 344, 359
BstSCI CCNGG 1 cut(s) 268
BstSLI GKGCMC 2 cut(s) 15, 355
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 5 cut(s) 180, 349, 350, 371, 431
BstX2I RGATCY 2 cut(s) 250, 320
BstYI RGATCY 2 cut(s) 250, 320
BtgI CCRYGG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 136
Cfr10I RCCGGY 2 cut(s) 479, 504
CseI GACGC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 33, 40
CspAI ACCGGT 2 cut(s) 479, 504
CviAII CATG 1 cut(s) 36
CviQI GTAC 2 cut(s) 33, 40
DdeI CTNAG 1 cut(s) 50
DpnI GATC 3 cut(s) 252, 294, 322
DpnII GATC 3 cut(s) 250, 292, 320
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 1 cut(s) 39
FaiI YATR 5 cut(s) 37, 107, 177, 278, 344
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 35
FauI CCCGC 1 cut(s) 307
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 6 cut(s) 86, 194, 339, 360, 363, 420
Fsp4HI GCNGC 6 cut(s) 86, 194, 339, 360, 363, 420
FspBI CTAG 2 cut(s) 89, 300
GluI GCNGC 6 cut(s) 86, 194, 339, 360, 363, 420
HapII CCGG 3 cut(s) 269, 480, 505
HgaI GACGC 1 cut(s) 63
Hin1II CATG 1 cut(s) 39
HinfI GANTC 2 cut(s) 328, 452
HpaII CCGG 3 cut(s) 269, 480, 505
HphI GGTGA 1 cut(s) 201
Hpy166II GTNNAC 2 cut(s) 13, 353
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 3 cut(s) 151, 300, 445
Hpy8I GTNNAC 2 cut(s) 13, 353
HpyCH4III ACNGT 4 cut(s) 138, 216, 372, 436
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 5 cut(s) 13, 284, 338, 353, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 344, 359
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 3 cut(s) 250, 292, 320
LpnPI CCDG 5 cut(s) 54, 62, 282, 333, 493
Lsp1109I GCAGC 5 cut(s) 180, 349, 350, 371, 431
LweI GCATC 3 cut(s) 132, 144, 406
MaeI CTAG 2 cut(s) 89, 300
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 430
MalI GATC 3 cut(s) 252, 294, 322
MboI GATC 3 cut(s) 250, 292, 320
MboII GAAGA 3 cut(s) 71, 315, 330
MflI RGATCY 2 cut(s) 250, 320
MhlI GDGCHC 3 cut(s) 15, 126, 355
MluCI AATT 1 cut(s) 484
MlyI GAGTC 1 cut(s) 337
MnlI CCTC 2 cut(s) 196, 415
MroXI GAANNNNTTC 1 cut(s) 322
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 3 cut(s) 269, 480, 505
MspR9I CCNGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 121, 344, 359
NciI CCSGG 1 cut(s) 270
NdeII GATC 3 cut(s) 250, 292, 320
NlaIII CATG 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 322
PfeI GAWTC 1 cut(s) 452
PinAI ACCGGT 2 cut(s) 479, 504
PkrI GCNGC 6 cut(s) 87, 195, 340, 361, 364, 421
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Psp1406I AACGTT 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 2 cut(s) 250, 320
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 2 cut(s) 34, 41
RsaNI GTAC 2 cut(s) 33, 40
SatI GCNGC 6 cut(s) 86, 194, 339, 360, 363, 420
Sau3AI GATC 3 cut(s) 250, 292, 320
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 3 cut(s) 15, 126, 355
SfaNI GCATC 3 cut(s) 132, 144, 406
Sse9I AATT 1 cut(s) 484
SsiI CCGC 2 cut(s) 85, 314
SspMI CTAG 2 cut(s) 89, 300
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 4 cut(s) 138, 216, 372, 436
TaiI ACGT 1 cut(s) 291
TaqI TCGA 3 cut(s) 29, 150, 326
TasI AATT 1 cut(s) 484
TatI WGTACW 1 cut(s) 32
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 1 cut(s) 452
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 5 cut(s) 193, 338, 359, 362, 419
Tsp45I GTSAC 1 cut(s) 430
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 1 cut(s) 496
VneI GTGCAC 2 cut(s) 11, 351
XbaI TCTAGA 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 322
XspI CTAG 2 cut(s) 89, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.