Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8322955.1

Orthogroup ID

OG0002815

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 838

Gene Structure 838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8322955.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

gtgaggctggaagcacaaaccgatatgtgttggctttgtgagcagccacagaaactgttaattccgtttgagatgcgtggctaccaaggtgtctataacttggaaaagaagatatatgaagctgctattagaggtctcaccccggttgaagttcctctcccagttaaatttccacttccaaatccacaagatccattttccttgaagccagggtctatatctgcaaacgttgatcaatctagaacatctgaagcgggaagatcttcgagtctcaatgcagctatagctggtgcacgagcagctgctacacagttctccaaaaaacctcaaactttcccaactacctccctaaatgatgcagccaaatctgtgacagttccaatcaagagtgaatcttttgaaggaggaagagcaatgaccggtaatttcagtgagagctccaacaaagagtcaatgacatcaaataacaaagatcaaatcagcagccgtaatcaaccttcttctggagctattagacctcatcctggtgcaccttctaaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASCH

Protein Analysis

181

Amino Acids

19.5

Weight (kDa)

9.33

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20410 AT2G20410
fragaria_vesca	FvH4_6g02180 FvH4_6g02180
malus_domestica	MD04G1229000.v1.1 MD12G1246100.v1.1
prunus_persica	Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1 Prupe.6G348800_v2.0.a1
pyrus_communis	pycom04g20290
rosa_chinensis	RchiOBHm_Chr3g0449951 RchiOBHm_Chr6g0274061
rosa_laevigata	RLG00000025772 RLG00000032996
rosa_multiflora	Rmu_co8322955.1_g000001 Rmu_sc0002646.1_g000003 Rmu_sc0008674.1_g000001 Rmu_sc0008896.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427740
rosa_rugosa	Rorug02G0624200
rosa_samantha	Rh3AG023300 Rh3BG024000 Rh3CG023000 Rh3DG023800 Rh5CG297500 Rh6BG165100 Rh6CG198200 Rh6DG150800
rosa_wichuraiana	Rw3G001870 Rw6G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	254
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	503, 524
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	3 cut(s)	149, 205, 401
AjnI	CCWGG	2 cut(s)	208, 523
AluBI	AGCT	6 cut(s)	122, 281, 287, 302, 438, 509
AluI	AGCT	6 cut(s)	122, 281, 287, 302, 438, 509
Alw21I	GWGCWC	3 cut(s)	295, 440, 532
Alw26I	GTCTC	2 cut(s)	140, 275
Alw44I	GTGCAC	2 cut(s)	291, 528
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	55
ApaLI	GTGCAC	2 cut(s)	291, 528
ApeKI	GCWGC	7 cut(s)	43, 122, 278, 299, 302, 359, 483
ApoI	RAATTY	1 cut(s)	167
AsiGI	ACCGGT	1 cut(s)	419
Asp700I	GAANNNNTTC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	130
BaeGI	GKGCMC	2 cut(s)	295, 532
BanII	GRGCYC	1 cut(s)	440
BarI	GAAGNNNNNNTAC	2 cut(s)	481, 513
BauI	CACGAG	1 cut(s)	294
Bbv12I	GWGCWC	3 cut(s)	295, 440, 532
BbvI	GCAGC	7 cut(s)	55, 109, 289, 290, 311, 371, 495
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	2 cut(s)	210, 525
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	140, 275
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	282
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	7 cut(s)	44, 123, 279, 300, 303, 360, 484
BlsI	GCNGC	7 cut(s)	45, 124, 280, 301, 304, 361, 485
Bme1390I	CCNGG	3 cut(s)	143, 210, 525
BmrFI	CCNGG	3 cut(s)	143, 210, 525
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	63, 346
BmuI	ACTGGG	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	85, 141, 209
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 524
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	210, 525
BseDI	CCNNGG	3 cut(s)	85, 141, 209
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	2 cut(s)	503, 524
BseMI	GCAATG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	161
BseSI	GKGCMC	2 cut(s)	295, 532
BseXI	GCAGC	7 cut(s)	55, 109, 289, 290, 311, 371, 495
BshTI	ACCGGT	1 cut(s)	419
BsiHKAI	GWGCWC	3 cut(s)	295, 440, 532
BsiSI	CCGG	2 cut(s)	143, 420
BslI	CCNNNNNNNGG	2 cut(s)	503, 524
BsmAI	GTCTC	2 cut(s)	140, 275
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	3 cut(s)	295, 440, 532
Bsp143I	GATC	4 cut(s)	190, 232, 260, 472
BspACI	CCGC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	403
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	85, 141, 209
BssMI	GATC	4 cut(s)	190, 232, 260, 472
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	210, 525
Bst4CI	ACNGT	3 cut(s)	57, 312, 376
Bst6I	CTCTTC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	537
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	4 cut(s)	193, 235, 263, 475
BstMAI	GTCTC	2 cut(s)	140, 275
BstMBI	GATC	4 cut(s)	190, 232, 260, 472
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 284, 299
BstNI	CCWGG	2 cut(s)	210, 525
BstSCI	CCNGG	3 cut(s)	141, 208, 523
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	2 cut(s)	295, 532
BstV1I	GCAGC	7 cut(s)	55, 109, 289, 290, 311, 371, 495
BstX2I	RGATCY	2 cut(s)	190, 260
BstYI	RGATCY	2 cut(s)	190, 260
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	436
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	419
CspAI	ACCGGT	1 cut(s)	419
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	4 cut(s)	192, 234, 262, 474
DpnII	GATC	4 cut(s)	190, 232, 260, 472
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
Ecl136II	GAGCTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	438
Eco57I	CTGAAG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	208, 523
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	85
FaiI	YATR	7 cut(s)	26, 96, 115, 117, 218, 284, 544
FauI	CCCGC	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	7 cut(s)	44, 123, 279, 300, 303, 360, 484
FokI	GGATG	1 cut(s)	507
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	7 cut(s)	44, 123, 279, 300, 303, 360, 484
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	7 cut(s)	44, 123, 279, 300, 303, 360, 484
GsuI	CTGGAG	1 cut(s)	525
HapII	CCGG	2 cut(s)	143, 420
HinfI	GANTC	3 cut(s)	268, 392, 449
HpaII	CCGG	2 cut(s)	143, 420
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	293, 530
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	3 cut(s)	240, 385, 504
Hpy8I	GTNNAC	2 cut(s)	293, 530
HpyAV	CCTTC	3 cut(s)	395, 507, 543
HpyCH4III	ACNGT	3 cut(s)	57, 312, 376
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	5 cut(s)	224, 278, 293, 359, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 284, 299
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	190, 232, 260, 472
LguI	GCTCTTC	1 cut(s)	403
LmnI	GCTCC	2 cut(s)	443, 506
LpnPI	CCDG	9 cut(s)	156, 174, 195, 222, 273, 433, 489, 510, 537
Lsp1109I	GCAGC	7 cut(s)	55, 109, 289, 290, 311, 371, 495
LweI	GCATC	2 cut(s)	63, 346
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	4 cut(s)	192, 234, 262, 474
MboI	GATC	4 cut(s)	190, 232, 260, 472
MboII	GAAGA	5 cut(s)	121, 255, 270, 420, 492
MflI	RGATCY	2 cut(s)	190, 260
MhlI	GDGCHC	3 cut(s)	295, 440, 532
MluCI	AATT	3 cut(s)	60, 167, 424
MlyI	GAGTC	2 cut(s)	277, 458
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	6 cut(s)	125, 165, 336, 355, 398, 528
MroXI	GAANNNNTTC	1 cut(s)	262
MseI	TTAA	2 cut(s)	59, 165
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	2 cut(s)	143, 420
MspR9I	CCNGG	3 cut(s)	143, 210, 525
MvaI	CCWGG	2 cut(s)	210, 525
MwoI	GCNNNNNNNGC	3 cut(s)	40, 284, 299
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	4 cut(s)	190, 232, 260, 472
NmuCI	GTSAC	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	392
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	7 cut(s)	45, 124, 280, 301, 304, 361, 485
PleI	GAGTC	2 cut(s)	276, 457
PpsI	GAGTC	2 cut(s)	276, 457
Psp124BI	GAGCTC	1 cut(s)	440
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	208, 523
PspGI	CCWGG	2 cut(s)	208, 523
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	190, 260
PvuII	CAGCTG	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	59, 165
SatI	GCNGC	7 cut(s)	44, 123, 279, 300, 303, 360, 484
Sau3AI	GATC	4 cut(s)	190, 232, 260, 472
SchI	GAGTC	2 cut(s)	277, 458
ScrFI	CCNGG	3 cut(s)	143, 210, 525
SduI	GDGCHC	3 cut(s)	295, 440, 532
SfaNI	GCATC	2 cut(s)	63, 346
SfcI	CTRYAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	525
Sse9I	AATT	3 cut(s)	60, 167, 424
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	440
StyD4I	CCNGG	3 cut(s)	141, 208, 523
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	3 cut(s)	57, 312, 376
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	266
TasI	AATT	3 cut(s)	60, 167, 424
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	2 cut(s)	59, 165
Tru9I	TTAA	2 cut(s)	59, 165
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	7 cut(s)	43, 122, 278, 299, 302, 359, 483
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	132
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	436
VneI	GTGCAC	2 cut(s)	291, 528
XapI	RAATTY	1 cut(s)	167
XbaI	TCTAGA	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	262
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.