Rw3G001870

ASCH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002815
Physical Location & Seq
Forward (+)
1624811 .. 1627682
2872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G001870.1

Sequence Viewer

Length: 897 bp
ATGAGAAGAGGAGGAGGTTCTTCAGGGAATTACAGAAACCCATGTCTGACTATGCACCAGCCATGGGCTTCTCTGCTCGTTTATGGTATCAAACGCATCGAGGGCAGGTCATGGCCTGCTCCCATTAGAGGACGTCTTTGGATTCATGCTGCTGGTAAGGTTCCAGAGGAGGCTACAATCAAAGCAATGGAGGATTTCTATCGGGAAATTTATGCGGTGGATGGAGTCACTGATATCAAATTTCCCCAACACTATCCAGTTTCAAGACTGCTAGGGTGTGTTGAAGTAGTTGGATGTGTTAGACGCGAAGAGTTAGCTGGTTGGGAGATGGTTCCTGAAGGGGTGAGGCTGGAAGCACAAACCGATATGTGTTGGCTTTGTGAGCAGCCACAGAAACTGTTAATTCCGTTTGAGATGCGTGGCTACCAAGGTGTCTATAACTTGGAAAAGAAGATATATGAAGCTGCTATTAGAGGTCTCACCCCGGTTGAAGTTCCTCTCCCAGTTAAATTTCCACTTCCAAATCCACAAGATCCATTTTCCTTGAAGCCAGGGTCTATATCTGCAAACGTTGATCAATCTAGAACATCTGAAGCGGGAAGATCTTCGAGTCTCAATGCAGCTATAGCTGGTGCACGAGCAGCTGCTACACAGTTCTCCAAAAAACCTCAAACTTTCCCAACTACCTCCCTAAATGATGCAGCCAAATCTGTGACAGTTCCAATCAAGAGTGAATCTTTTGAAGGAGGAAGAGCAATGACCGGTAATTTCAGTGAGAGCTCCAACAAAGAGTCAATGACATCAAATAACAAAGATCAAATCAGCAGCCGTAATCAACCTTCTTCTGGAGCTATTAGACCTCATCCTGGTGCACCTTCTAAGATAGTGAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ASCH

Protein Analysis

298

Amino Acids

32.69

Weight (kDa)

9.25

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASCH PF04266 16 - 105 1.7e-08 ASCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 96
AccII CGCG 1 cut(s) 306
AciI CCGC 2 cut(s) 215, 596
AclI AACGTT 1 cut(s) 570
AclWI GGATC 1 cut(s) 527
AcsI RAATTY 3 cut(s) 207, 239, 509
AcuI CTGAAG 3 cut(s) 6, 357, 612
AcyI GRCGYC 1 cut(s) 133
AfiI CCNNNNNNNGG 4 cut(s) 64, 128, 845, 866
AgeI ACCGGT 1 cut(s) 761
AgsI TTSAA 5 cut(s) 264, 284, 491, 547, 743
AjnI CCWGG 2 cut(s) 550, 865
AluBI AGCT 7 cut(s) 317, 464, 623, 629, 644, 780, 851
AluI AGCT 7 cut(s) 317, 464, 623, 629, 644, 780, 851
Alw21I GWGCWC 3 cut(s) 637, 782, 874
Alw26I GTCTC 2 cut(s) 482, 617
Alw44I GTGCAC 2 cut(s) 633, 870
AlwI GGATC 1 cut(s) 527
AlwNI CAGNNNCTG 1 cut(s) 397
AoxI GGCC 1 cut(s) 113
ApaLI GTGCAC 2 cut(s) 633, 870
ApeKI GCWGC 8 cut(s) 149, 385, 464, 620, 641, 644, 701, 825
ApoI RAATTY 3 cut(s) 207, 239, 509
AsiGI ACCGGT 1 cut(s) 761
Asp700I GAANNNNTTC 1 cut(s) 604
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 2 cut(s) 355, 472
BaeGI GKGCMC 2 cut(s) 637, 874
BanII GRGCYC 1 cut(s) 782
BarI GAAGNNNNNNTAC 2 cut(s) 823, 855
BauI CACGAG 1 cut(s) 636
Bbv12I GWGCWC 3 cut(s) 637, 782, 874
BbvI GCAGC 8 cut(s) 136, 397, 451, 631, 632, 653, 713, 837
BccI CCATC 2 cut(s) 215, 322
BceAI ACGGC 1 cut(s) 813
BciT130I CCWGG 2 cut(s) 552, 867
BclI TGATCA 1 cut(s) 574
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 2 cut(s) 482, 617
BfaI CTAG 2 cut(s) 272, 582
BfmI CTRYAG 1 cut(s) 624
BfuAI ACCTGC 1 cut(s) 96
BglII AGATCT 1 cut(s) 602
BisI GCNGC 8 cut(s) 150, 386, 465, 621, 642, 645, 702, 826
BlsI GCNGC 8 cut(s) 151, 387, 466, 622, 643, 646, 703, 827
Bme1390I CCNGG 3 cut(s) 485, 552, 867
BmiI GGNNCC 2 cut(s) 162, 333
BmrFI CCNGG 3 cut(s) 485, 552, 867
BmrI ACTGGG 1 cut(s) 497
BmsI GCATC 3 cut(s) 105, 405, 688
BmuI ACTGGG 1 cut(s) 497
BpmI CTGGAG 1 cut(s) 867
BpuMI CCSGG 1 cut(s) 485
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 133
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 4 cut(s) 62, 427, 483, 551
BsaWI WCCGGW 1 cut(s) 761
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 128, 845, 866
Bse118I RCCGGY 1 cut(s) 761
Bse1I ACTGG 2 cut(s) 257, 503
Bse3DI GCAATG 2 cut(s) 192, 762
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 2 cut(s) 552, 867
BseDI CCNNGG 4 cut(s) 62, 427, 483, 551
BseGI GGATG 3 cut(s) 226, 299, 862
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 4 cut(s) 64, 128, 845, 866
BseMI GCAATG 2 cut(s) 192, 762
BseNI ACTGG 2 cut(s) 257, 503
BseRI GAGGAG 3 cut(s) 24, 27, 182
BseSI GKGCMC 2 cut(s) 637, 874
BseXI GCAGC 8 cut(s) 136, 397, 451, 631, 632, 653, 713, 837
Bsh1236I CGCG 1 cut(s) 306
BshFI GGCC 1 cut(s) 115
BshTI ACCGGT 1 cut(s) 761
BsiHKAI GWGCWC 3 cut(s) 637, 782, 874
BsiSI CCGG 2 cut(s) 485, 762
BslI CCNNNNNNNGG 4 cut(s) 64, 128, 845, 866
BsmAI GTCTC 2 cut(s) 482, 617
BsnI GGCC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 482
Bsp1286I GDGCHC 3 cut(s) 637, 782, 874
Bsp143I GATC 4 cut(s) 532, 574, 602, 814
Bsp19I CCATGG 1 cut(s) 62
BspACI CCGC 2 cut(s) 215, 596
BspANI GGCC 1 cut(s) 115
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 162, 333
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 527
BspQI GCTCTTC 1 cut(s) 745
BspTNI GGTCTC 1 cut(s) 482
BsrDI GCAATG 2 cut(s) 192, 762
BsrFI RCCGGY 1 cut(s) 761
BsrI ACTGG 2 cut(s) 257, 503
BssAI RCCGGY 1 cut(s) 761
BssECI CCNNGG 4 cut(s) 62, 427, 483, 551
BssMI GATC 4 cut(s) 532, 574, 602, 814
BssNI GRCGYC 1 cut(s) 133
BssSI CACGAG 1 cut(s) 636
BssT1I CCWWGG 2 cut(s) 62, 427
Bst2BI CACGAG 1 cut(s) 636
Bst2UI CCWGG 2 cut(s) 552, 867
Bst4CI ACNGT 3 cut(s) 399, 654, 718
Bst6I CTCTTC 2 cut(s) 303, 745
BstACI GRCGYC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 879
BstDSI CCRYGG 1 cut(s) 62
BstF5I GGATG 3 cut(s) 226, 299, 862
BstFNI CGCG 1 cut(s) 306
BstKTI GATC 4 cut(s) 535, 577, 605, 817
BstMAI GTCTC 2 cut(s) 482, 617
BstMBI GATC 4 cut(s) 532, 574, 602, 814
BstMWI GCNNNNNNNGC 4 cut(s) 102, 382, 626, 641
BstNI CCWGG 2 cut(s) 552, 867
BstSCI CCNGG 3 cut(s) 483, 550, 865
BstSFI CTRYAG 1 cut(s) 624
BstSLI GKGCMC 2 cut(s) 637, 874
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 8 cut(s) 136, 397, 451, 631, 632, 653, 713, 837
BstX2I RGATCY 2 cut(s) 532, 602
BstYI RGATCY 2 cut(s) 532, 602
BsuRI GGCC 1 cut(s) 115
BtgI CCRYGG 1 cut(s) 62
BtsCI GGATG 3 cut(s) 226, 299, 862
BtsIMutI CAGTG 2 cut(s) 228, 778
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 397
Cfr10I RCCGGY 1 cut(s) 761
CseI GACGC 1 cut(s) 312
CspAI ACCGGT 1 cut(s) 761
CviAII CATG 4 cut(s) 42, 63, 111, 146
DdeI CTNAG 1 cut(s) 879
DpnI GATC 4 cut(s) 534, 576, 604, 816
DpnII GATC 4 cut(s) 532, 574, 602, 814
Eam1104I CTCTTC 2 cut(s) 303, 745
EarI CTCTTC 2 cut(s) 303, 745
Ecl136II GAGCTC 1 cut(s) 780
Eco130I CCWWGG 2 cut(s) 62, 427
Eco24I GRGCYC 1 cut(s) 782
Eco31I GGTCTC 1 cut(s) 482
Eco32I GATATC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 780
Eco57I CTGAAG 3 cut(s) 6, 357, 612
EcoICRI GAGCTC 1 cut(s) 780
EcoRII CCWGG 2 cut(s) 550, 865
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 2 cut(s) 62, 427
EcoT38I GRGCYC 1 cut(s) 782
ErhI CCWWGG 2 cut(s) 62, 427
FaeI CATG 4 cut(s) 45, 66, 114, 149
FatI CATG 4 cut(s) 41, 62, 110, 145
FauI CCCGC 1 cut(s) 589
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 8 cut(s) 150, 386, 465, 621, 642, 645, 702, 826
FokI GGATG 3 cut(s) 233, 306, 849
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 8 cut(s) 150, 386, 465, 621, 642, 645, 702, 826
FspBI CTAG 2 cut(s) 272, 582
GluI GCNGC 8 cut(s) 150, 386, 465, 621, 642, 645, 702, 826
GsuI CTGGAG 1 cut(s) 867
HaeIII GGCC 1 cut(s) 115
HapII CCGG 2 cut(s) 485, 762
HgaI GACGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 4 cut(s) 45, 66, 114, 149
HinfI GANTC 5 cut(s) 142, 225, 610, 734, 791
HpaII CCGG 2 cut(s) 485, 762
HphI GGTGA 2 cut(s) 355, 472
Hpy166II GTNNAC 2 cut(s) 635, 872
Hpy188I TCNGA 2 cut(s) 48, 592
Hpy188III TCNNGA 7 cut(s) 164, 203, 264, 335, 582, 727, 846
Hpy8I GTNNAC 2 cut(s) 635, 872
HpyAV CCTTC 4 cut(s) 332, 737, 849, 885
HpyCH4III ACNGT 3 cut(s) 399, 654, 718
HpyCH4IV ACGT 2 cut(s) 133, 570
HpyCH4V TGCA 6 cut(s) 55, 566, 620, 635, 701, 872
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 382, 626, 641
HpyF3I CTNAG 1 cut(s) 879
HpySE526I ACGT 2 cut(s) 133, 570
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 4 cut(s) 45, 66, 114, 149
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 4 cut(s) 532, 574, 602, 814
LguI GCTCTTC 1 cut(s) 745
LmnI GCTCC 3 cut(s) 124, 785, 848
Lsp1109I GCAGC 8 cut(s) 136, 397, 451, 631, 632, 653, 713, 837
LweI GCATC 3 cut(s) 105, 405, 688
MaeI CTAG 2 cut(s) 272, 582
MaeII ACGT 2 cut(s) 133, 570
MaeIII GTNAC 2 cut(s) 226, 712
MalI GATC 4 cut(s) 534, 576, 604, 816
MboI GATC 4 cut(s) 532, 574, 602, 814
MboII GAAGA 8 cut(s) 12, 18, 320, 463, 597, 612, 762, 834
MflI RGATCY 2 cut(s) 532, 602
MhlI GDGCHC 3 cut(s) 637, 782, 874
MluCI AATT 6 cut(s) 28, 207, 239, 402, 509, 766
MlyI GAGTC 3 cut(s) 234, 619, 800
MmeI TCCRAC 2 cut(s) 271, 807
MroXI GAANNNNTTC 1 cut(s) 604
MseI TTAA 3 cut(s) 401, 507, 895
MslI CAYNNNNRTG 1 cut(s) 867
MspA1I CMGCKG 1 cut(s) 644
MspI CCGG 2 cut(s) 485, 762
MspR9I CCNGG 3 cut(s) 485, 552, 867
MvaI CCWGG 2 cut(s) 552, 867
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 4 cut(s) 102, 382, 626, 641
NciI CCSGG 1 cut(s) 485
NcoI CCATGG 1 cut(s) 62
NdeII GATC 4 cut(s) 532, 574, 602, 814
NlaIII CATG 4 cut(s) 45, 66, 114, 149
NlaIV GGNNCC 2 cut(s) 162, 333
NmuCI GTSAC 2 cut(s) 226, 712
PciSI GCTCTTC 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 604
PfeI GAWTC 2 cut(s) 142, 734
PinAI ACCGGT 1 cut(s) 761
PkrI GCNGC 8 cut(s) 151, 387, 466, 622, 643, 646, 703, 827
PleI GAGTC 3 cut(s) 233, 618, 799
PpsI GAGTC 3 cut(s) 233, 618, 799
Psp124BI GAGCTC 1 cut(s) 782
Psp1406I AACGTT 1 cut(s) 570
Psp6I CCWGG 2 cut(s) 550, 865
PspGI CCWGG 2 cut(s) 550, 865
PspN4I GGNNCC 2 cut(s) 162, 333
PstNI CAGNNNCTG 1 cut(s) 397
PsuI RGATCY 2 cut(s) 532, 602
PvuII CAGCTG 1 cut(s) 644
RseI CAYNNNNRTG 1 cut(s) 867
SacI GAGCTC 1 cut(s) 782
SapI GCTCTTC 1 cut(s) 745
SaqAI TTAA 3 cut(s) 401, 507, 895
SatI GCNGC 8 cut(s) 150, 386, 465, 621, 642, 645, 702, 826
Sau3AI GATC 4 cut(s) 532, 574, 602, 814
SchI GAGTC 3 cut(s) 234, 619, 800
ScrFI CCNGG 3 cut(s) 485, 552, 867
SduI GDGCHC 3 cut(s) 637, 782, 874
SfaNI GCATC 3 cut(s) 105, 405, 688
SfcI CTRYAG 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 867
Sse9I AATT 6 cut(s) 28, 207, 239, 402, 509, 766
SsiI CCGC 2 cut(s) 215, 596
SspMI CTAG 2 cut(s) 272, 582
SstI GAGCTC 1 cut(s) 782
StyD4I CCNGG 3 cut(s) 483, 550, 865
StyI CCWWGG 2 cut(s) 62, 427
TaaI ACNGT 3 cut(s) 399, 654, 718
TaiI ACGT 2 cut(s) 136, 573
TaqI TCGA 2 cut(s) 99, 608
TasI AATT 6 cut(s) 28, 207, 239, 402, 509, 766
TfiI GAWTC 2 cut(s) 142, 734
Tru1I TTAA 3 cut(s) 401, 507, 895
Tru9I TTAA 3 cut(s) 401, 507, 895
TscAI CASTG 2 cut(s) 235, 778
TseFI GTSAC 2 cut(s) 226, 712
TseI GCWGC 8 cut(s) 149, 385, 464, 620, 641, 644, 701, 825
Tsp45I GTSAC 2 cut(s) 226, 712
TspDTI ATGAA 2 cut(s) 134, 474
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 2 cut(s) 235, 778
VneI GTGCAC 2 cut(s) 633, 870
XapI RAATTY 3 cut(s) 207, 239, 509
XbaI TCTAGA 1 cut(s) 581
XmnI GAANNNNTTC 1 cut(s) 604
XspI CTAG 2 cut(s) 272, 582
ZraI GACGTC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.