AT2G23270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002124
Physical Location & Seq
Forward (+)
9903215 .. 9903845
631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23270.1

Sequence Viewer

Length: 261 bp
ATGATGATGAACAAAGTTGTTTTGGGTTCGTTTCTGTTTTTCATGTTGGTGAGTTCGAATTTTGTGGTGGAGGCTCGTCCTTTGGGTTTAACGAAGGCTGAAGAGAACCTCGTGGCTAAGTTCTTCGATGGTTTGTCACTTGGGGCGATTAAGGAGTCGGGTCCTAGCTCTGGTGGTGAGGGTCATCGGTTCGTGGACCGGACTGAGACGCTTGAATATGGTAAGCATTCAGGTCCCAGCACGAGTGGACCCGGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0005575 GO:0005576 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009628 GO:0045087 GO:0048046 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0080167 GO:2000026 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.19

Weight (kDa)

6.26

Isoelectric Point (pI)

24.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 58
AspS9I GGNCC 4 cut(s) 161, 196, 233, 248
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 2 cut(s) 61, 188
AsuII TTCGAA 1 cut(s) 56
AvaII GGWCC 4 cut(s) 161, 196, 233, 248
BauI CACGAG 2 cut(s) 110, 241
BccI CCATC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 4 cut(s) 161, 196, 233, 248
BmgT120I GGNCC 4 cut(s) 161, 196, 233, 248
BmiI GGNNCC 3 cut(s) 162, 235, 250
BmrFI CCNGG 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 195
BseYI CCCAGC 1 cut(s) 236
BsiSI CCGG 2 cut(s) 199, 252
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 200
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 3 cut(s) 162, 235, 250
BspT104I TTCGAA 1 cut(s) 56
BssSI CACGAG 2 cut(s) 110, 241
Bst2BI CACGAG 2 cut(s) 110, 241
Bst6I CTCTTC 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 117, 204
BstMAI GTCTC 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 250
Cfr13I GGNCC 4 cut(s) 161, 196, 233, 248
CseI GACGC 1 cut(s) 217
CviAII CATG 1 cut(s) 43
CviJI RGCY 4 cut(s) 74, 98, 116, 168
CviKI_1 RGCY 4 cut(s) 74, 98, 116, 168
DdeI CTNAG 2 cut(s) 117, 204
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco47I GGWCC 4 cut(s) 161, 196, 233, 248
Eco57I CTGAAG 1 cut(s) 120
EcoO109I RGGNCCY 2 cut(s) 161, 233
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 1 cut(s) 46
FaiI YATR 2 cut(s) 44, 219
FaqI GGGAC 1 cut(s) 219
FatI CATG 1 cut(s) 42
FspBI CTAG 1 cut(s) 165
GsaI CCCAGC 1 cut(s) 240
HapII CCGG 2 cut(s) 199, 252
HgaI GACGC 1 cut(s) 217
Hin1II CATG 1 cut(s) 46
HinfI GANTC 1 cut(s) 155
HpaII CCGG 2 cut(s) 199, 252
HphI GGTGA 2 cut(s) 61, 188
Hpy166II GTNNAC 2 cut(s) 196, 248
Hpy8I GTNNAC 2 cut(s) 196, 248
HpyAV CCTTC 1 cut(s) 88
HpyF3I CTNAG 2 cut(s) 117, 204
Hsp92II CATG 1 cut(s) 46
LpnPI CCDG 4 cut(s) 156, 212, 216, 250
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 135, 254
MboII GAAGA 2 cut(s) 113, 115
MluCI AATT 1 cut(s) 58
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 3 cut(s) 64, 119, 172
MseI TTAA 2 cut(s) 89, 150
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 2 cut(s) 199, 252
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 226
NciI CCSGG 1 cut(s) 252
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 3 cut(s) 162, 235, 250
NmuCI GTSAC 2 cut(s) 135, 254
NspV TTCGAA 1 cut(s) 56
PctI GAATGC 1 cut(s) 226
PflFI GACNNNGTC 1 cut(s) 252
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PpuMI RGGWCCY 2 cut(s) 161, 233
Psp5II RGGWCCY 2 cut(s) 161, 233
PspFI CCCAGC 1 cut(s) 236
PspN4I GGNNCC 3 cut(s) 162, 235, 250
PspPI GGNCC 4 cut(s) 161, 196, 233, 248
PspPPI RGGWCCY 2 cut(s) 161, 233
PsyI GACNNNGTC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 2 cut(s) 89, 150
Sau96I GGNCC 4 cut(s) 161, 196, 233, 248
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 252
SetI ASST 3 cut(s) 111, 170, 235
SfuI TTCGAA 1 cut(s) 56
SinI GGWCC 4 cut(s) 161, 196, 233, 248
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 58
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 250
TaqI TCGA 2 cut(s) 56, 126
TasI AATT 1 cut(s) 58
Tru1I TTAA 2 cut(s) 89, 150
Tru9I TTAA 2 cut(s) 89, 150
TseFI GTSAC 2 cut(s) 135, 254
Tsp45I GTSAC 2 cut(s) 135, 254
TspDTI ATGAA 2 cut(s) 23, 31
Tth111I GACNNNGTC 1 cut(s) 252
VpaK11BI GGWCC 4 cut(s) 161, 196, 233, 248
XapI RAATTY 1 cut(s) 58
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.