Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Reverse (-)

31730133 .. 31745706

Gene Structure 15574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG146100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGACAACCAAATGCCTCGGTTTCCTTTTGGTCATTGTTTTGCTCAACTCCACATTTCTTGGGGAAAGTGCTCGACGTTTCGATATTATAAAGCACCGCAACTTGTGTCGTGGAGCAATCGGGGGTTTCTTTGACGGCTTCTGTCTCGGATCGATCAAGGAGTCGGGTCCTAGCCCGGGTCAAGGGAACAAGTTCAATGACAACCAAACCCTTGGAGGAAGAAAGGTTTCCGGCCCTAGCCCTGGTACTAGAAACAAAGTCACAAATGTTGAGACACTCGAAGGGGTTAAGGATTCCGGCCCAAGCCCTGGTACGGGACACAAATTTACAAAGGTTGAGACCCTCGGAGGGATTAAGGATGCTGGCCTCAGCCCTGATACAAGAAACTCATTCACGAATATAGATATTCTTAGAGGGATTAAGGATGGCCCAAGCCCTGGTACAGGAAACTCATTTACAAATGTAGATATTTTAGGAGGAATTAAGGATGGGCCAAGCCCAGGTACAGGAAACAAATTAACGAACAACATACATCACCCTGCAATTCCAGATGATTTGCAAGACTCTAAACAAAGTGTATCAAGTCTTCATGCTAGACTTGAACATGCCGTAGTGTCTGTTGATCTAAAACCTTCAGATTGCATTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

22.67

Weight (kDa)

8.69

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccB7I	CCANNNNNTGG	2 cut(s)	308, 437
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	4 cut(s)	247, 313, 442, 505
AgsI	TTSAA	2 cut(s)	196, 602
AjnI	CCWGG	4 cut(s)	241, 307, 436, 499
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	3 cut(s)	149, 266, 332
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	5 cut(s)	232, 298, 364, 427, 491
ApoI	RAATTY	1 cut(s)	323
Asp700I	GAANNNNTTC	2 cut(s)	191, 226
AspS9I	GGNCC	5 cut(s)	167, 233, 299, 428, 491
AsuC2I	CCSGG	2 cut(s)	176, 177
AsuHPI	GGTGA	1 cut(s)	527
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	167
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
BbsI	GAAGAC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	368
BccI	CCATC	2 cut(s)	419, 482
BceAI	ACGGC	2 cut(s)	151, 593
BciT130I	CCWGG	4 cut(s)	243, 309, 438, 501
BcnI	CCSGG	2 cut(s)	176, 177
BcoDI	GTCTC	3 cut(s)	149, 266, 332
BfaI	CTAG	4 cut(s)	171, 237, 249, 594
Bme1390I	CCNGG	6 cut(s)	176, 177, 243, 309, 438, 501
Bme18I	GGWCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	5 cut(s)	167, 233, 299, 428, 491
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	6 cut(s)	176, 177, 243, 309, 438, 501
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	578
Bpu10I	CCTNAGC	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	176, 177
Bsa29I	ATCGAT	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	8 cut(s)	16, 175, 211, 241, 307, 343, 436, 499
BseBI	CCWGG	4 cut(s)	243, 309, 438, 501
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	8 cut(s)	16, 175, 211, 241, 307, 343, 436, 499
BseGI	GGATG	3 cut(s)	364, 430, 493
BseMII	CTCAG	1 cut(s)	382
BshFI	GGCC	5 cut(s)	234, 300, 366, 429, 493
BshVI	ATCGAT	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	176, 231, 297
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	3 cut(s)	149, 266, 332
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	642
BsnI	GGCC	5 cut(s)	234, 300, 366, 429, 493
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	149, 153, 622
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	5 cut(s)	234, 300, 366, 429, 493
BspCNI	CTCAG	1 cut(s)	381
BspDI	ATCGAT	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	332
BssECI	CCNNGG	8 cut(s)	16, 175, 211, 241, 307, 343, 436, 499
BssMI	GATC	3 cut(s)	149, 153, 622
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	4 cut(s)	243, 309, 438, 501
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	368, 410
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstF5I	GGATG	3 cut(s)	364, 430, 493
BstKTI	GATC	3 cut(s)	152, 156, 625
BstMAI	GTCTC	3 cut(s)	149, 266, 332
BstMBI	GATC	3 cut(s)	149, 153, 622
BstNI	CCWGG	4 cut(s)	243, 309, 438, 501
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	6 cut(s)	174, 175, 241, 307, 436, 499
BstV2I	GAAGAC	1 cut(s)	578
BstXI	CCANNNNNNTGG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	152
BsuRI	GGCC	5 cut(s)	234, 300, 366, 429, 493
BsuTUI	ATCGAT	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	364, 430, 493
Cac8I	GCNNGC	1 cut(s)	364
Cfr13I	GGNCC	5 cut(s)	167, 233, 299, 428, 491
Cfr9I	CCCGGG	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	246, 312, 441, 504
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	2 cut(s)	590, 605
CviQI	GTAC	4 cut(s)	246, 312, 441, 504
DdeI	CTNAG	2 cut(s)	368, 410
DpnI	GATC	3 cut(s)	151, 155, 624
DpnII	GATC	3 cut(s)	149, 153, 622
Eco130I	CCWWGG	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	618
Eco88I	CYCGRG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	4 cut(s)	241, 307, 436, 499
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	2 cut(s)	593, 608
FaiI	YATR	5 cut(s)	89, 401, 530, 591, 606
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	2 cut(s)	589, 604
FokI	GGATG	3 cut(s)	371, 437, 500
FspBI	CTAG	4 cut(s)	171, 237, 249, 594
HaeIII	GGCC	5 cut(s)	234, 300, 366, 429, 493
HapII	CCGG	3 cut(s)	176, 231, 297
Hin1II	CATG	2 cut(s)	593, 608
HinfI	GANTC	3 cut(s)	161, 293, 563
HpaII	CCGG	3 cut(s)	176, 231, 297
HphI	GGTGA	1 cut(s)	527
Hpy188I	TCNGA	3 cut(s)	149, 347, 637
Hpy188III	TCNNGA	2 cut(s)	394, 548
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	2 cut(s)	275, 642
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	542, 559, 642
HpyF3I	CTNAG	2 cut(s)	368, 410
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	593, 608
Kzo9I	GATC	3 cut(s)	149, 153, 622
LmnI	GCTCC	1 cut(s)	113
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	4 cut(s)	171, 237, 249, 594
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	151, 155, 624
MboI	GATC	3 cut(s)	149, 153, 622
MboII	GAAGA	2 cut(s)	231, 578
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	4 cut(s)	323, 480, 515, 543
MlyI	GAGTC	2 cut(s)	170, 557
MnlI	CCTC	7 cut(s)	26, 209, 341, 353, 377, 407, 470
MroXI	GAANNNNTTC	2 cut(s)	191, 226
MseI	TTAA	5 cut(s)	288, 354, 420, 483, 518
MspI	CCGG	3 cut(s)	176, 231, 297
MspR9I	CCNGG	6 cut(s)	176, 177, 243, 309, 438, 501
Mva1269I	GAATGC	1 cut(s)	642
MvaI	CCWGG	4 cut(s)	243, 309, 438, 501
NciI	CCSGG	2 cut(s)	176, 177
NdeII	GATC	3 cut(s)	149, 153, 622
NlaIII	CATG	2 cut(s)	593, 608
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	608
PctI	GAATGC	1 cut(s)	642
PdmI	GAANNNNTTC	2 cut(s)	191, 226
PfeI	GAWTC	1 cut(s)	293
PflMI	CCANNNNNTGG	2 cut(s)	308, 437
PleI	GAGTC	2 cut(s)	169, 557
PpsI	GAGTC	2 cut(s)	169, 557
PpuMI	RGGWCCY	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	4 cut(s)	241, 307, 436, 499
PspGI	CCWGG	4 cut(s)	241, 307, 436, 499
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	5 cut(s)	167, 233, 299, 428, 491
PspPPI	RGGWCCY	1 cut(s)	167
RsaI	GTAC	4 cut(s)	247, 313, 442, 505
RsaNI	GTAC	4 cut(s)	246, 312, 441, 504
SaqAI	TTAA	5 cut(s)	288, 354, 420, 483, 518
Sau3AI	GATC	3 cut(s)	149, 153, 622
Sau96I	GGNCC	5 cut(s)	167, 233, 299, 428, 491
SchI	GAGTC	2 cut(s)	170, 557
ScrFI	CCNGG	6 cut(s)	176, 177, 243, 309, 438, 501
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	5 cut(s)	79, 228, 336, 505, 634
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	167
SmaI	CCCGGG	1 cut(s)	177
Sse9I	AATT	4 cut(s)	323, 480, 515, 543
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	4 cut(s)	171, 237, 249, 594
StyD4I	CCNGG	6 cut(s)	174, 175, 241, 307, 436, 499
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	4 cut(s)	73, 81, 152, 279
TasI	AATT	4 cut(s)	323, 480, 515, 543
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	5 cut(s)	288, 354, 420, 483, 518
Tru9I	TTAA	5 cut(s)	288, 354, 420, 483, 518
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	578
TspMI	CCCGGG	1 cut(s)	175
Van91I	CCANNNNNTGG	2 cut(s)	308, 437
VpaK11BI	GGWCC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	608
XmaI	CCCGGG	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	191, 226
XspI	CTAG	4 cut(s)	171, 237, 249, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.