Rw1G012820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002124
Physical Location & Seq
Reverse (-)
28557294 .. 28557833
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012820.1

Sequence Viewer

Length: 540 bp
ATGACAACCAAATGCCTCGGTTTCCTTTTGGTCATTGTTTTGCTCAACTCCACAATTCTTGGGGAAAGTGCTCGACGTTTCGATATTATAAAGCACGGCAACTTGTGTCGTGGAGCAATCGGGGGTTTCTTTGACGGCTTATGTCTCGGATCGATCAAGGAGTCGGGTCCTAGCCCGGGTCAAGGGAACAAGTTCAATGACAACCAAACCCTTGGAGGAAGAAAGATTTCCGGCCCTAGCCCTGGTACCAGAAACAAAGTCACAAATGTTGAGACACTCGAAGGGGTTAAGGATTCCGGCCCAAGCCCTGGTACGGGACACAAATTTACAAAGGTTGAGACCCTCGGAGGGATTAAGGATGCTGGTCTCAGCCCTGATACAAGAAACTCATTCACGAATATAGACATTCTTAGAGGGATTAAGGATGGCCCAAGCCCTGGTACAGGAAACTCATTTACAAATGTAGATATTTTAGGAGGAATTAAGGATGGGCCAAGCCCGGGTACAGGAAACAAATTAACGAACAACGTGCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

18.55

Weight (kDa)

9.27

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccB7I CCANNNNNTGG 2 cut(s) 308, 437
AclWI GGATC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 4 cut(s) 247, 313, 442, 505
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 3 cut(s) 241, 307, 436
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 4 cut(s) 149, 266, 332, 371
AlwI GGATC 1 cut(s) 157
Ama87I CYCGRG 2 cut(s) 175, 499
AoxI GGCC 4 cut(s) 232, 298, 427, 491
ApoI RAATTY 1 cut(s) 323
Asp700I GAANNNNTTC 2 cut(s) 191, 226
Asp718I GGTACC 1 cut(s) 245
AspS9I GGNCC 5 cut(s) 167, 233, 299, 428, 491
AsuC2I CCSGG 4 cut(s) 176, 177, 500, 501
AvaI CYCGRG 2 cut(s) 175, 499
AvaII GGWCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 73
BccI CCATC 2 cut(s) 419, 482
BceAI ACGGC 2 cut(s) 112, 151
BcgI CGANNNNNNTGC 1 cut(s) 511
BciT130I CCWGG 3 cut(s) 243, 309, 438
BcnI CCSGG 4 cut(s) 176, 177, 500, 501
BcoDI GTCTC 4 cut(s) 149, 266, 332, 371
BfaI CTAG 2 cut(s) 171, 237
Bme1390I CCNGG 7 cut(s) 176, 177, 243, 309, 438, 500, 501
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 2 cut(s) 175, 499
BmgT120I GGNCC 5 cut(s) 167, 233, 299, 428, 491
BmiI GGNNCC 2 cut(s) 168, 247
BmrFI CCNGG 7 cut(s) 176, 177, 243, 309, 438, 500, 501
BmsI GCATC 1 cut(s) 349
BpuMI CCSGG 4 cut(s) 176, 177, 500, 501
Bsa29I ATCGAT 1 cut(s) 152
BsaI GGTCTC 2 cut(s) 332, 371
BsaJI CCNNGG 8 cut(s) 16, 175, 211, 241, 307, 343, 436, 499
BseBI CCWGG 3 cut(s) 243, 309, 438
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 8 cut(s) 16, 175, 211, 241, 307, 343, 436, 499
BseGI GGATG 3 cut(s) 364, 430, 493
BseMII CTCAG 1 cut(s) 382
BshFI GGCC 4 cut(s) 234, 300, 429, 493
BshNI GGYRCC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 2 cut(s) 175, 499
BsiSI CCGG 4 cut(s) 176, 231, 297, 500
BslFI GGGAC 1 cut(s) 330
BsmAI GTCTC 4 cut(s) 149, 266, 332, 371
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 4 cut(s) 234, 300, 429, 493
Bso31I GGTCTC 2 cut(s) 332, 371
BsoBI CYCGRG 2 cut(s) 175, 499
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 149, 153
BspANI GGCC 4 cut(s) 234, 300, 429, 493
BspCNI CTCAG 1 cut(s) 381
BspDI ATCGAT 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 168, 247
BspPI GGATC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 245
BspTNI GGTCTC 2 cut(s) 332, 371
BssECI CCNNGG 8 cut(s) 16, 175, 211, 241, 307, 343, 436, 499
BssMI GATC 2 cut(s) 149, 153
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 3 cut(s) 243, 309, 438
BstDEI CTNAG 2 cut(s) 368, 410
BstENI CCTNNNNNAGG 1 cut(s) 441
BstF5I GGATG 3 cut(s) 364, 430, 493
BstKTI GATC 2 cut(s) 152, 156
BstMAI GTCTC 4 cut(s) 149, 266, 332, 371
BstMBI GATC 2 cut(s) 149, 153
BstNI CCWGG 3 cut(s) 243, 309, 438
BstSCI CCNGG 7 cut(s) 174, 175, 241, 307, 436, 498, 499
BstXI CCANNNNNNTGG 1 cut(s) 212
Bsu15I ATCGAT 1 cut(s) 152
BsuRI GGCC 4 cut(s) 234, 300, 429, 493
BsuTUI ATCGAT 1 cut(s) 152
BtsCI GGATG 3 cut(s) 364, 430, 493
Cfr13I GGNCC 5 cut(s) 167, 233, 299, 428, 491
Cfr9I CCCGGG 2 cut(s) 175, 499
ClaI ATCGAT 1 cut(s) 152
Csp6I GTAC 4 cut(s) 246, 312, 441, 504
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviQI GTAC 4 cut(s) 246, 312, 441, 504
DdeI CTNAG 2 cut(s) 368, 410
DpnI GATC 2 cut(s) 151, 155
DpnII GATC 2 cut(s) 149, 153
Eco130I CCWWGG 1 cut(s) 211
Eco31I GGTCTC 2 cut(s) 332, 371
Eco47I GGWCC 1 cut(s) 167
Eco88I CYCGRG 2 cut(s) 175, 499
EcoNI CCTNNNNNAGG 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 3 cut(s) 241, 307, 436
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaiI YATR 3 cut(s) 89, 142, 401
FaqI GGGAC 1 cut(s) 330
FokI GGATG 3 cut(s) 371, 437, 500
FspBI CTAG 2 cut(s) 171, 237
HaeIII GGCC 4 cut(s) 234, 300, 429, 493
HapII CCGG 4 cut(s) 176, 231, 297, 500
HinfI GANTC 2 cut(s) 161, 293
HpaII CCGG 4 cut(s) 176, 231, 297, 500
Hpy188I TCNGA 2 cut(s) 149, 347
Hpy188III TCNNGA 1 cut(s) 394
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 275
HpyCH4IV ACGT 2 cut(s) 76, 528
HpyCH4V TGCA 1 cut(s) 532
HpyF3I CTNAG 2 cut(s) 368, 410
HpySE526I ACGT 2 cut(s) 76, 528
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 2 cut(s) 149, 153
LmnI GCTCC 1 cut(s) 113
LweI GCATC 1 cut(s) 349
MaeI CTAG 2 cut(s) 171, 237
MaeII ACGT 2 cut(s) 76, 528
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 151, 155
MboI GATC 2 cut(s) 149, 153
MboII GAAGA 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 4 cut(s) 54, 323, 480, 515
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 6 cut(s) 26, 209, 341, 353, 407, 470
MroXI GAANNNNTTC 2 cut(s) 191, 226
MseI TTAA 5 cut(s) 288, 354, 420, 483, 518
MspI CCGG 4 cut(s) 176, 231, 297, 500
MspR9I CCNGG 7 cut(s) 176, 177, 243, 309, 438, 500, 501
MvaI CCWGG 3 cut(s) 243, 309, 438
NciI CCSGG 4 cut(s) 176, 177, 500, 501
NdeII GATC 2 cut(s) 149, 153
NlaIV GGNNCC 2 cut(s) 168, 247
NmuCI GTSAC 1 cut(s) 259
PdmI GAANNNNTTC 2 cut(s) 191, 226
PfeI GAWTC 1 cut(s) 293
PflMI CCANNNNNTGG 2 cut(s) 308, 437
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 167
PsiI TTATAA 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 3 cut(s) 241, 307, 436
PspGI CCWGG 3 cut(s) 241, 307, 436
PspN4I GGNNCC 2 cut(s) 168, 247
PspPI GGNCC 5 cut(s) 167, 233, 299, 428, 491
PspPPI RGGWCCY 1 cut(s) 167
RsaI GTAC 4 cut(s) 247, 313, 442, 505
RsaNI GTAC 4 cut(s) 246, 312, 441, 504
SaqAI TTAA 5 cut(s) 288, 354, 420, 483, 518
Sau3AI GATC 2 cut(s) 149, 153
Sau96I GGNCC 5 cut(s) 167, 233, 299, 428, 491
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 7 cut(s) 176, 177, 243, 309, 438, 500, 501
SduI GDGCHC 1 cut(s) 73
SetI ASST 3 cut(s) 79, 336, 531
SfaNI GCATC 1 cut(s) 349
SinI GGWCC 1 cut(s) 167
SmaI CCCGGG 2 cut(s) 177, 501
Sse9I AATT 4 cut(s) 54, 323, 480, 515
SspMI CTAG 2 cut(s) 171, 237
StyD4I CCNGG 7 cut(s) 174, 175, 241, 307, 436, 498, 499
StyI CCWWGG 1 cut(s) 211
TaiI ACGT 2 cut(s) 79, 531
TaqI TCGA 4 cut(s) 73, 81, 152, 279
TasI AATT 4 cut(s) 54, 323, 480, 515
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 5 cut(s) 288, 354, 420, 483, 518
Tru9I TTAA 5 cut(s) 288, 354, 420, 483, 518
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspMI CCCGGG 2 cut(s) 175, 499
Van91I CCANNNNNTGG 2 cut(s) 308, 437
VpaK11BI GGWCC 1 cut(s) 167
XagI CCTNNNNNAGG 1 cut(s) 441
XapI RAATTY 1 cut(s) 323
XmaI CCCGGG 2 cut(s) 175, 499
XmnI GAANNNNTTC 2 cut(s) 191, 226
XspI CTAG 2 cut(s) 171, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.