Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Reverse (-)

9747629 .. 9748885

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACAACCAAATGCCTCGGTTTCCTTTTAGTTCTTATTTTCATCAACTCTACATTTCTTGCGGCAAGTGCTCGACATTTCGATATTATGAAGCACCGCAACTTGTGTCACGGAGCAATCGACAGTTTCTTTGGTGGCTTGTGTCTCGGATCGATCAAGGGGTCGGGTCCTAGCCCGGGTCAAGGAAACAAGTTCACTGACCAACGTACCCTTGGAGGAAGAAAGGTTTCCGGCCCTAGCCCGGGTACCGGAAACAAAGTCACAAATGTTGAGACCCTCGGCGGGATCAAGGATTCAGGTCCCAGCCCTGGTACAGGAAACTCATTTACGAATGTAGATACACTTGGAGGGATTAAGAGCGGCCCAAGCCCGGGTACAGGAAACTCGCTTACAAAGAAGTCGGGCCCGAGTCCCGGTACAGGAAACAAATTTACAAATGTTGGGACCTTGGGGGAAACAAAGAACTCGGGCCCAAGTCCCGGTACAGGAAACAAAATTAAAGACAGCATACATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

17.42

Weight (kDa)

9.91

Isoelectric Point (pI)

30.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	245
AccBSI	CCGCTC	1 cut(s)	360
AciI	CCGC	4 cut(s)	62, 97, 282, 360
AclWI	GGATC	2 cut(s)	157, 293
AcsI	RAATTY	1 cut(s)	428
AfaI	GTAC	6 cut(s)	208, 247, 313, 376, 418, 484
AjnI	CCWGG	1 cut(s)	307
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	149, 266
AlwI	GGATC	2 cut(s)	157, 293
Ama87I	CYCGRG	5 cut(s)	175, 241, 370, 406, 466
AoxI	GGCC	4 cut(s)	232, 361, 403, 469
ApaI	GGGCCC	2 cut(s)	407, 473
ApoI	RAATTY	1 cut(s)	428
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
Asp700I	GAANNNNTTC	1 cut(s)	226
Asp718I	GGTACC	1 cut(s)	245
AspS9I	GGNCC	9 cut(s)	167, 233, 299, 362, 403, 404, 444, 469, 470
AsuC2I	CCSGG	8 cut(s)	176, 177, 242, 243, 371, 372, 414, 480
AvaI	CYCGRG	5 cut(s)	175, 241, 370, 406, 466
AvaII	GGWCC	3 cut(s)	167, 299, 444
BaeGI	GKGCMC	2 cut(s)	407, 473
BaeI	ACNNNNGTAYC	2 cut(s)	190, 223
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	407, 473
Bbv12I	GWGCWC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	309
BcnI	CCSGG	8 cut(s)	176, 177, 242, 243, 371, 372, 414, 480
BcoDI	GTCTC	2 cut(s)	149, 266
BfaI	CTAG	2 cut(s)	171, 237
BisI	GCNGC	2 cut(s)	63, 361
BlsI	GCNGC	2 cut(s)	64, 362
Bme1390I	CCNGG	9 cut(s)	176, 177, 242, 243, 309, 371, 372, 414, 480
Bme18I	GGWCC	3 cut(s)	167, 299, 444
BmeT110I	CYCGRG	5 cut(s)	175, 241, 370, 406, 466
BmgT120I	GGNCC	9 cut(s)	167, 233, 299, 362, 403, 404, 444, 469, 470
BmiI	GGNNCC	6 cut(s)	168, 247, 301, 405, 445, 471
BmrFI	CCNGG	9 cut(s)	176, 177, 242, 243, 309, 371, 372, 414, 480
BpuMI	CCSGG	8 cut(s)	176, 177, 242, 243, 371, 372, 414, 480
Bsa29I	ATCGAT	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	8 cut(s)	16, 175, 211, 241, 277, 307, 370, 447
BsaWI	WCCGGW	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	8 cut(s)	16, 175, 211, 241, 277, 307, 370, 447
BseSI	GKGCMC	2 cut(s)	407, 473
BseYI	CCCAGC	1 cut(s)	302
BshFI	GGCC	4 cut(s)	234, 363, 405, 471
BshNI	GGYRCC	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	5 cut(s)	175, 241, 370, 406, 466
BsiSI	CCGG	7 cut(s)	176, 231, 242, 249, 371, 414, 480
BslFI	GGGAC	4 cut(s)	285, 396, 457, 462
BsmAI	GTCTC	2 cut(s)	149, 266
BsmFI	GGGAC	4 cut(s)	285, 396, 457, 462
BsnI	GGCC	4 cut(s)	234, 363, 405, 471
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	5 cut(s)	175, 241, 370, 406, 466
Bsp120I	GGGCCC	2 cut(s)	403, 469
Bsp1286I	GDGCHC	3 cut(s)	73, 407, 473
Bsp143I	GATC	3 cut(s)	149, 153, 285
BspACI	CCGC	4 cut(s)	62, 97, 282, 360
BspANI	GGCC	4 cut(s)	234, 363, 405, 471
BspDI	ATCGAT	1 cut(s)	152
BspLI	GGNNCC	6 cut(s)	168, 247, 301, 405, 445, 471
BspPI	GGATC	2 cut(s)	157, 293
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	360
BssECI	CCNNGG	8 cut(s)	16, 175, 211, 241, 277, 307, 370, 447
BssMI	GATC	3 cut(s)	149, 153, 285
BssT1I	CCWWGG	2 cut(s)	211, 447
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	125
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstKTI	GATC	3 cut(s)	152, 156, 288
BstMAI	GTCTC	2 cut(s)	149, 266
BstMBI	GATC	3 cut(s)	149, 153, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 366
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	9 cut(s)	174, 175, 240, 241, 307, 369, 370, 412, 478
BstSLI	GKGCMC	2 cut(s)	407, 473
Bsu15I	ATCGAT	1 cut(s)	152
BsuRI	GGCC	4 cut(s)	234, 363, 405, 471
BsuTUI	ATCGAT	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	195
Cfr13I	GGNCC	9 cut(s)	167, 233, 299, 362, 403, 404, 444, 469, 470
Cfr9I	CCCGGG	3 cut(s)	175, 241, 370
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	6 cut(s)	207, 246, 312, 375, 417, 483
CviJI	RGCY	9 cut(s)	138, 174, 234, 240, 306, 363, 369, 405, 471
CviKI_1	RGCY	9 cut(s)	138, 174, 234, 240, 306, 363, 369, 405, 471
CviQI	GTAC	6 cut(s)	207, 246, 312, 375, 417, 483
DpnI	GATC	3 cut(s)	151, 155, 287
DpnII	GATC	3 cut(s)	149, 153, 285
Eco130I	CCWWGG	2 cut(s)	211, 447
Eco24I	GRGCYC	2 cut(s)	407, 473
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	3 cut(s)	167, 299, 444
Eco88I	CYCGRG	5 cut(s)	175, 241, 370, 406, 466
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoO109I	RGGNCCY	3 cut(s)	167, 299, 444
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	211, 447
EcoT38I	GRGCYC	2 cut(s)	407, 473
ErhI	CCWWGG	2 cut(s)	211, 447
FaiI	YATR	2 cut(s)	89, 509
FaqI	GGGAC	4 cut(s)	285, 396, 457, 462
FauI	CCCGC	1 cut(s)	275
Fnu4HI	GCNGC	2 cut(s)	63, 361
FriOI	GRGCYC	2 cut(s)	407, 473
Fsp4HI	GCNGC	2 cut(s)	63, 361
FspBI	CTAG	2 cut(s)	171, 237
GluI	GCNGC	2 cut(s)	63, 361
GsaI	CCCAGC	1 cut(s)	306
HaeIII	GGCC	4 cut(s)	234, 363, 405, 471
HapII	CCGG	7 cut(s)	176, 231, 242, 249, 371, 414, 480
HinfI	GANTC	2 cut(s)	293, 409
HpaII	CCGG	7 cut(s)	176, 231, 242, 249, 371, 414, 480
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 366
HpySE526I	ACGT	1 cut(s)	205
KpnI	GGTACC	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	149, 153, 285
LmnI	GCTCC	1 cut(s)	113
MaeI	CTAG	2 cut(s)	171, 237
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	107, 259
MalI	GATC	3 cut(s)	151, 155, 287
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	3 cut(s)	149, 153, 285
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	3 cut(s)	73, 407, 473
MluCI	AATT	2 cut(s)	428, 495
MlyI	GAGTC	1 cut(s)	418
MnlI	CCTC	4 cut(s)	26, 209, 287, 341
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	2 cut(s)	354, 498
MspI	CCGG	7 cut(s)	176, 231, 242, 249, 371, 414, 480
MspR9I	CCNGG	9 cut(s)	176, 177, 242, 243, 309, 371, 372, 414, 480
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	68, 366
NciI	CCSGG	8 cut(s)	176, 177, 242, 243, 371, 372, 414, 480
NdeII	GATC	3 cut(s)	149, 153, 285
NlaIV	GGNNCC	6 cut(s)	168, 247, 301, 405, 445, 471
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	2 cut(s)	107, 259
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	64, 362
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
PpuMI	RGGWCCY	3 cut(s)	167, 299, 444
Psp5II	RGGWCCY	3 cut(s)	167, 299, 444
Psp6I	CCWGG	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	6 cut(s)	168, 247, 301, 405, 445, 471
PspOMI	GGGCCC	2 cut(s)	403, 469
PspPI	GGNCC	9 cut(s)	167, 233, 299, 362, 403, 404, 444, 469, 470
PspPPI	RGGWCCY	3 cut(s)	167, 299, 444
RsaI	GTAC	6 cut(s)	208, 247, 313, 376, 418, 484
RsaNI	GTAC	6 cut(s)	207, 246, 312, 375, 417, 483
SaqAI	TTAA	2 cut(s)	354, 498
SatI	GCNGC	2 cut(s)	63, 361
Sau3AI	GATC	3 cut(s)	149, 153, 285
Sau96I	GGNCC	9 cut(s)	167, 233, 299, 362, 403, 404, 444, 469, 470
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	9 cut(s)	176, 177, 242, 243, 309, 371, 372, 414, 480
SduI	GDGCHC	3 cut(s)	73, 407, 473
SetI	ASST	4 cut(s)	208, 228, 301, 449
SinI	GGWCC	3 cut(s)	167, 299, 444
SmaI	CCCGGG	3 cut(s)	177, 243, 372
Sse9I	AATT	2 cut(s)	428, 495
SsiI	CCGC	4 cut(s)	62, 97, 282, 360
SspMI	CTAG	2 cut(s)	171, 237
StyD4I	CCNGG	9 cut(s)	174, 175, 240, 241, 307, 369, 370, 412, 478
StyI	CCWWGG	2 cut(s)	211, 447
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	4 cut(s)	73, 81, 120, 152
TasI	AATT	2 cut(s)	428, 495
TauI	GCSGC	2 cut(s)	65, 363
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	354, 498
Tru9I	TTAA	2 cut(s)	354, 498
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	2 cut(s)	107, 259
Tsp45I	GTSAC	2 cut(s)	107, 259
TspDTI	ATGAA	2 cut(s)	31, 104
TspGWI	ACGGA	1 cut(s)	126
TspMI	CCCGGG	3 cut(s)	175, 241, 370
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	3 cut(s)	167, 299, 444
XagI	CCTNNNNNAGG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XmaI	CCCGGG	3 cut(s)	175, 241, 370
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	2 cut(s)	171, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.