Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Reverse (-)

17956915 .. 17957520

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGACAACCAAATGCCTTGGTTTCCTTTTGGTTCTTCTTTTGCTCGACTCCACATTTGTTGCAGCAAGTGCTCGACGTTTTGATATTATGAAGCACCGCAACTTGTGTCGCGGAGCAATTGGGGATTTCTTTGATGGCTTATGTCTCGGATCGATCAAGGAGTCGGGTCCTAGCCCGGGTCAAGGGAACAAATTCACTGACCAACGGACCCTTGGAGGAAGAAAGGTGTCTGGCCCTAGCCCTGGTACTGGAAACAAAGTCACAAATGTTGAGACACTCAGAGGGGTTAAAGATTCCGGCTCAAGCTCTGGTACGGGACACAAATTTACTAATGTTGAGACCCTCGAAGGGATTAAGGATACTGGCCCCAGTCGTGGTATAAGAAACTCATTTACGAATGTAGATATACTTGCTGGGATTAAGGATGGCCCAAGCCCTGGTACCGGAAACTCATTTACAAATGTAGATATTCTCGGAGGGATTAAGGACGGCCCAAGCCCTGGTACAGGAAATAAATTTACAAATGTTGAGACCTTGGGAGGAACTAAGAACTCAGGCCCAAGTCCCGGTACAGGAAACAAATTTACGGACAAAATACATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

20.83

Weight (kDa)

9.51

Isoelectric Point (pI)

30.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	440
AccB7I	CCANNNNNTGG	2 cut(s)	437, 500
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	97, 111
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	4 cut(s)	191, 323, 515, 581
AfaI	GTAC	5 cut(s)	247, 313, 442, 505, 571
AjnI	CCWGG	3 cut(s)	241, 436, 499
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	4 cut(s)	149, 266, 332, 524
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	5 cut(s)	232, 364, 427, 490, 556
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	4 cut(s)	191, 323, 515, 581
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
Asp700I	GAANNNNTTC	1 cut(s)	191
Asp718I	GGTACC	1 cut(s)	440
AspS9I	GGNCC	7 cut(s)	167, 207, 233, 365, 428, 491, 557
AsuC2I	CCSGG	3 cut(s)	176, 177, 567
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	167, 207
BanI	GGYRCC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	128, 419
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	3 cut(s)	243, 438, 501
BciVI	GTATCC	1 cut(s)	352
BcnI	CCSGG	3 cut(s)	176, 177, 567
BcoDI	GTCTC	4 cut(s)	149, 266, 332, 524
BfaI	CTAG	2 cut(s)	171, 237
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	6 cut(s)	176, 177, 243, 438, 501, 567
Bme18I	GGWCC	2 cut(s)	167, 207
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	7 cut(s)	167, 207, 233, 365, 428, 491, 557
BmiI	GGNNCC	4 cut(s)	168, 209, 367, 442
BmrFI	CCNGG	6 cut(s)	176, 177, 243, 438, 501, 567
BmrI	ACTGGG	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	286
BpuMI	CCSGG	3 cut(s)	176, 177, 567
Bsa29I	ATCGAT	1 cut(s)	152
BsaI	GGTCTC	2 cut(s)	332, 524
BsaJI	CCNNGG	7 cut(s)	16, 175, 211, 241, 436, 499, 534
BsaWI	WCCGGW	1 cut(s)	443
Bse1I	ACTGG	3 cut(s)	253, 367, 369
BseBI	CCWGG	3 cut(s)	243, 438, 501
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	7 cut(s)	16, 175, 211, 241, 436, 499, 534
BseGI	GGATG	1 cut(s)	430
BseMII	CTCAG	2 cut(s)	292, 567
BseNI	ACTGG	3 cut(s)	253, 367, 369
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	5 cut(s)	234, 366, 429, 492, 558
BshNI	GGYRCC	1 cut(s)	440
BshVI	ATCGAT	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	4 cut(s)	176, 297, 444, 567
BslFI	GGGAC	2 cut(s)	330, 549
BsmAI	GTCTC	4 cut(s)	149, 266, 332, 524
BsmFI	GGGAC	2 cut(s)	330, 549
BsnI	GGCC	5 cut(s)	234, 366, 429, 492, 558
Bso31I	GGTCTC	2 cut(s)	332, 524
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	149, 153
BspACI	CCGC	2 cut(s)	97, 111
BspANI	GGCC	5 cut(s)	234, 366, 429, 492, 558
BspCNI	CTCAG	2 cut(s)	291, 566
BspDI	ATCGAT	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	4 cut(s)	168, 209, 367, 442
BspPI	GGATC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	2 cut(s)	332, 524
BsrI	ACTGG	3 cut(s)	253, 367, 369
BssECI	CCNNGG	7 cut(s)	16, 175, 211, 241, 436, 499, 534
BssMI	GATC	2 cut(s)	149, 153
BssT1I	CCWWGG	3 cut(s)	16, 211, 534
Bst2UI	CCWGG	3 cut(s)	243, 438, 501
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstDEI	CTNAG	3 cut(s)	278, 546, 553
BstENI	CCTNNNNNAGG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	152, 156
BstMAI	GTCTC	4 cut(s)	149, 266, 332, 524
BstMBI	GATC	2 cut(s)	149, 153
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	3 cut(s)	243, 438, 501
BstSCI	CCNGG	6 cut(s)	174, 175, 241, 436, 499, 565
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	5 cut(s)	234, 366, 429, 492, 558
BsuTUI	ATCGAT	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	195
Cfr13I	GGNCC	7 cut(s)	167, 207, 233, 365, 428, 491, 557
Cfr9I	CCCGGG	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	5 cut(s)	246, 312, 441, 504, 570
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviQI	GTAC	5 cut(s)	246, 312, 441, 504, 570
DdeI	CTNAG	3 cut(s)	278, 546, 553
DpnI	GATC	2 cut(s)	151, 155
DpnII	GATC	2 cut(s)	149, 153
Eco130I	CCWWGG	3 cut(s)	16, 211, 534
Eco31I	GGTCTC	2 cut(s)	332, 524
Eco47I	GGWCC	2 cut(s)	167, 207
Eco88I	CYCGRG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	3 cut(s)	241, 436, 499
EcoT14I	CCWWGG	3 cut(s)	16, 211, 534
ErhI	CCWWGG	3 cut(s)	16, 211, 534
FaiI	YATR	4 cut(s)	89, 142, 380, 407
FaqI	GGGAC	2 cut(s)	330, 549
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	171, 237
GluI	GCNGC	1 cut(s)	63
GsaI	CCCAGC	1 cut(s)	417
HaeIII	GGCC	5 cut(s)	234, 366, 429, 492, 558
HapII	CCGG	4 cut(s)	176, 297, 444, 567
HinfI	GANTC	3 cut(s)	47, 161, 293
HpaII	CCGG	4 cut(s)	176, 297, 444, 567
Hpy188I	TCNGA	3 cut(s)	149, 281, 476
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	278, 546, 553
HpySE526I	ACGT	1 cut(s)	76
KpnI	GGTACC	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	149, 153
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	171, 237
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	151, 155
MboI	GATC	2 cut(s)	149, 153
MboII	GAAGA	2 cut(s)	26, 231
MfeI	CAATTG	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	5 cut(s)	117, 191, 323, 515, 581
MlyI	GAGTC	2 cut(s)	41, 170
MnlI	CCTC	5 cut(s)	209, 275, 353, 470, 533
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	4 cut(s)	288, 354, 420, 483
MspI	CCGG	4 cut(s)	176, 297, 444, 567
MspR9I	CCNGG	6 cut(s)	176, 177, 243, 438, 501, 567
MunI	CAATTG	1 cut(s)	117
MvaI	CCWGG	3 cut(s)	243, 438, 501
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	3 cut(s)	176, 177, 567
NdeII	GATC	2 cut(s)	149, 153
NlaIV	GGNNCC	4 cut(s)	168, 209, 367, 442
NmuCI	GTSAC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	293
PflMI	CCANNNNNTGG	2 cut(s)	437, 500
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	2 cut(s)	41, 169
PpsI	GAGTC	2 cut(s)	41, 169
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	3 cut(s)	241, 436, 499
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	3 cut(s)	241, 436, 499
PspN4I	GGNNCC	4 cut(s)	168, 209, 367, 442
PspPI	GGNCC	7 cut(s)	167, 207, 233, 365, 428, 491, 557
PspPPI	RGGWCCY	1 cut(s)	167
RsaI	GTAC	5 cut(s)	247, 313, 442, 505, 571
RsaNI	GTAC	5 cut(s)	246, 312, 441, 504, 570
SaqAI	TTAA	4 cut(s)	288, 354, 420, 483
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	149, 153
Sau96I	GGNCC	7 cut(s)	167, 207, 233, 365, 428, 491, 557
SchI	GAGTC	2 cut(s)	41, 170
ScrFI	CCNGG	6 cut(s)	176, 177, 243, 438, 501, 567
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	4 cut(s)	79, 228, 308, 536
SinI	GGWCC	2 cut(s)	167, 207
SmaI	CCCGGG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	5 cut(s)	117, 191, 323, 515, 581
SsiI	CCGC	2 cut(s)	97, 111
SspMI	CTAG	2 cut(s)	171, 237
StyD4I	CCNGG	6 cut(s)	174, 175, 241, 436, 499, 565
StyI	CCWWGG	3 cut(s)	16, 211, 534
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	4 cut(s)	45, 73, 152, 345
TasI	AATT	5 cut(s)	117, 191, 323, 515, 581
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	4 cut(s)	288, 354, 420, 483
Tru9I	TTAA	4 cut(s)	288, 354, 420, 483
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	104
TspGWI	ACGGA	2 cut(s)	220, 602
TspMI	CCCGGG	1 cut(s)	175
TspRI	CASTG	1 cut(s)	202
Van91I	CCANNNNNTGG	2 cut(s)	437, 500
VpaK11BI	GGWCC	2 cut(s)	167, 207
XagI	CCTNNNNNAGG	1 cut(s)	504
XapI	RAATTY	4 cut(s)	191, 323, 515, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XmaI	CCCGGG	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	171, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.