Rroxscaffold_7G00210430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002124
Physical Location & Seq
Reverse (-)
60851145 .. 60851420
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210430.1

Sequence Viewer

Length: 276 bp
ATGCATAAAATGGCAACAAACCAACAAAGATTTGGTGCTCTTCTTCTTCTCCTTCTTTTGAGTTTTAGCCTTCTTCGCATCGAAGCAAGGCCGTTTCGCAGTTACAGAGGGATGGATGGTTTGCCATTTGGTATGGTGAAGCGTTCAGGGCCAAGCAAAGGTGGTGGAGGACACAGAAGAAGGGCTGCTCGGGTTCTGCAGCAACATGGAATCAAAGACAACTCTGGCCCGAGTCCTGGAGTTGGTCACCAGAATGGCAATGGCATACACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.91

Weight (kDa)

12.0

Isoelectric Point (pI)

70.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 3 cut(s) 158, 236, 242
AjnI CCWGG 1 cut(s) 235
Alw21I GWGCWC 1 cut(s) 40
Ama87I CYCGRG 2 cut(s) 189, 229
AoxI GGCC 3 cut(s) 89, 149, 226
ApeKI GCWGC 2 cut(s) 185, 199
AspS9I GGNCC 2 cut(s) 149, 227
AsuHPI GGTGA 2 cut(s) 148, 239
AvaI CYCGRG 2 cut(s) 189, 229
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 172, 211
BccI CCATC 2 cut(s) 106, 110
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 197
BisI GCNGC 2 cut(s) 186, 200
BlsI GCNGC 2 cut(s) 187, 201
Bme1390I CCNGG 1 cut(s) 237
BmeT110I CYCGRG 2 cut(s) 189, 229
BmgT120I GGNCC 2 cut(s) 149, 227
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 236, 242
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 117, 121
BseLI CCNNNNNNNGG 3 cut(s) 158, 236, 242
BseMI GCAATG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 172, 211
BshFI GGCC 3 cut(s) 91, 151, 228
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 2 cut(s) 189, 229
BslI CCNNNNNNNGG 3 cut(s) 158, 236, 242
BsnI GGCC 3 cut(s) 91, 151, 228
BsoBI CYCGRG 2 cut(s) 189, 229
Bsp1286I GDGCHC 1 cut(s) 40
BspANI GGCC 3 cut(s) 91, 151, 228
BspMAI CTGCAG 1 cut(s) 201
BspQI GCTCTTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 237
Bst6I CTCTTC 1 cut(s) 45
BstEII GGTNACC 1 cut(s) 245
BstF5I GGATG 2 cut(s) 117, 121
BstMWI GCNNNNNNNGC 2 cut(s) 75, 148
BstNI CCWGG 1 cut(s) 237
BstPI GGTNACC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 172, 211
BsuRI GGCC 3 cut(s) 91, 151, 228
BtsCI GGATG 2 cut(s) 117, 121
Cfr13I GGNCC 2 cut(s) 149, 227
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 1 cut(s) 206
CviJI RGCY 5 cut(s) 69, 91, 151, 185, 228
CviKI_1 RGCY 5 cut(s) 69, 91, 151, 185, 228
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco88I CYCGRG 2 cut(s) 189, 229
Eco91I GGTNACC 1 cut(s) 245
EcoO65I GGTNACC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 209
FaiI YATR 4 cut(s) 6, 134, 207, 266
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 186, 200
FokI GGATG 2 cut(s) 124, 128
Fsp4HI GCNGC 2 cut(s) 186, 200
GluI GCNGC 2 cut(s) 186, 200
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 3 cut(s) 91, 151, 228
Hin1II CATG 1 cut(s) 209
HinfI GANTC 2 cut(s) 210, 232
HphI GGTGA 2 cut(s) 148, 239
HpyAV CCTTC 3 cut(s) 62, 80, 174
HpyCH4V TGCA 2 cut(s) 4, 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 148
Hsp92II CATG 1 cut(s) 209
LguI GCTCTTC 1 cut(s) 45
LpnPI CCDG 5 cut(s) 132, 210, 222, 249, 263
Lsp1109I GCAGC 2 cut(s) 172, 211
LweI GCATC 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 101, 245
MboII GAAGA 5 cut(s) 32, 35, 38, 65, 189
MhlI GDGCHC 1 cut(s) 40
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 2 cut(s) 101, 161
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 75, 148
NlaIII CATG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 210
PfoI TCCNGGA 1 cut(s) 235
PkrI GCNGC 2 cut(s) 187, 201
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 235
PspEI GGTNACC 1 cut(s) 245
PspGI CCWGG 1 cut(s) 235
PspPI GGNCC 2 cut(s) 149, 227
PstI CTGCAG 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 45
SatI GCNGC 2 cut(s) 186, 200
Sau96I GGNCC 2 cut(s) 149, 227
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 237
SduI GDGCHC 1 cut(s) 40
SetI ASST 2 cut(s) 163, 273
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 235
TaqI TCGA 1 cut(s) 81
TfiI GAWTC 1 cut(s) 210
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 185, 199
Tsp45I GTSAC 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 2 cut(s) 29, 257
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.