Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001215.1

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Forward (+)

13156 .. 15728

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001215.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgacaaccaaatgcctcggtttccttttggtcattgttttgctcaactccacaattcttggggaaagtgctcgacgtttcgatattataaagcacggcaacttgtgtcgtggagcaatcgggggtttctttgacggcttatgtctcggatcgatcaaggagtcgggtcctagcccgggtcaagggaacaagttcaatgacaaccaaacccttggaggaagaaaggtttccggccctagccctggtaccagaaacaaagtcacaaatgttgagacactcgaaggggttaaggattccggcccaagccctggtacgggacacaaatttacaaaggttgagaccctcggagggattaaggatgctggcctcagccctgatacaagaaactcattcacgaatatagacattcttagagggattaaggatggcccaagccctgaccggccttacctcttcccggcctcttccttctgcatccagaccacctgcagcctgcctcgatcccgtcaaccacccttgctagcacaacagcctagcccagatcggcattcgtctccctctccggaccggccccagcactactgccagccaaatccacgggcctcacctcaccagccagacctccatatccttcttactgcctcttgcccagcacgcacaagccaccacgcacacagccttcgatcaagccccgcccgcgcggcctcgcctgcgcagatcccagcagccacaggtcggcctcgacatccctccagaccggcctctagcctgctctacccgcctgacagcagctccgcgtcactcgcccagcgcgcgtcctccagcgtagcagcccctcagagcgcctcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

29.81

Weight (kDa)

9.84

Isoelectric Point (pI)

69.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AarI	CACCTGC	1 cut(s)	494
Acc16I	TGCGCA	1 cut(s)	714
Acc36I	ACCTGC	1 cut(s)	494
Acc65I	GGTACC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccII	CGCG	5 cut(s)	699, 701, 797, 813, 815
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	5 cut(s)	693, 697, 701, 779, 795
AclWI	GGATC	3 cut(s)	157, 495, 712
AcsI	RAATTY	1 cut(s)	323
AfaI	GTAC	2 cut(s)	247, 313
AfiI	CCNNNNNNNGG	9 cut(s)	176, 182, 242, 308, 313, 314, 348, 457, 735
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	241, 307
AluBI	AGCT	1 cut(s)	792
AluI	AGCT	1 cut(s)	792
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	4 cut(s)	149, 266, 332, 558
AlwI	GGATC	3 cut(s)	157, 495, 712
Ama87I	CYCGRG	1 cut(s)	175
Aor13HI	TCCGGA	1 cut(s)	562
ApeKI	GCWGC	4 cut(s)	489, 725, 789, 830
ApoI	RAATTY	1 cut(s)	323
Asp700I	GAANNNNTTC	2 cut(s)	191, 226
Asp718I	GGTACC	1 cut(s)	245
AspLEI	GCGC	5 cut(s)	701, 715, 813, 815, 845
AspS9I	GGNCC	7 cut(s)	167, 233, 299, 428, 565, 570, 600
AsuC2I	CCSGG	3 cut(s)	176, 177, 458
AsuHPI	GGTGA	2 cut(s)	597, 602
AsuNHI	GCTAGC	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	167, 565
BanI	GGYRCC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	368
BbvI	GCAGC	4 cut(s)	501, 737, 801, 842
BccI	CCATC	1 cut(s)	419
BceAI	ACGGC	2 cut(s)	112, 151
BciT130I	CCWGG	2 cut(s)	243, 309
BcnI	CCSGG	3 cut(s)	176, 177, 458
BcoDI	GTCTC	4 cut(s)	149, 266, 332, 558
BfaI	CTAG	6 cut(s)	171, 237, 521, 534, 765, 850
BfmI	CTRYAG	1 cut(s)	487
BfoI	RGCGCY	1 cut(s)	846
BfuAI	ACCTGC	1 cut(s)	494
BglI	GCCNNNNNGGC	1 cut(s)	701
BisI	GCNGC	5 cut(s)	490, 702, 726, 790, 831
BlsI	GCNGC	5 cut(s)	491, 703, 727, 791, 832
Bme1390I	CCNGG	5 cut(s)	176, 177, 243, 309, 458
Bme18I	GGWCC	2 cut(s)	167, 565
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	7 cut(s)	167, 233, 299, 428, 565, 570, 600
BmiI	GGNNCC	3 cut(s)	168, 247, 572
BmrFI	CCNGG	5 cut(s)	176, 177, 243, 309, 458
BmsI	GCATC	2 cut(s)	349, 483
BmtI	GCTAGC	1 cut(s)	524
BpmI	CTGGAG	2 cut(s)	736, 805
Bpu10I	CCTNAGC	1 cut(s)	368
BpuMI	CCSGG	3 cut(s)	176, 177, 458
Bsa29I	ATCGAT	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	7 cut(s)	16, 175, 211, 241, 307, 343, 596
BsaWI	WCCGGW	1 cut(s)	562
BsaXI	ACNNNNNCTCC	2 cut(s)	776, 806
Bsc4I	CCNNNNNNNGG	9 cut(s)	176, 182, 242, 308, 313, 314, 348, 457, 735
Bse118I	RCCGGY	3 cut(s)	441, 567, 757
BseAI	TCCGGA	1 cut(s)	562
BseBI	CCWGG	2 cut(s)	243, 309
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	7 cut(s)	16, 175, 211, 241, 307, 343, 596
BseGI	GGATG	4 cut(s)	364, 430, 474, 745
BseLI	CCNNNNNNNGG	9 cut(s)	176, 182, 242, 308, 313, 314, 348, 457, 735
BseMII	CTCAG	2 cut(s)	382, 851
BsePI	GCGCGC	1 cut(s)	811
BseXI	GCAGC	4 cut(s)	501, 737, 801, 842
BseYI	CCCAGC	4 cut(s)	573, 649, 721, 807
Bsh1236I	CGCG	5 cut(s)	699, 701, 797, 813, 815
BshNI	GGYRCC	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	8 cut(s)	176, 231, 297, 442, 458, 563, 568, 758
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	9 cut(s)	176, 182, 242, 308, 313, 314, 348, 457, 735
BsmAI	GTCTC	4 cut(s)	149, 266, 332, 558
BsmBI	CGTCTC	1 cut(s)	558
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	547
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	562
Bsp143I	GATC	6 cut(s)	149, 153, 500, 541, 683, 717
BspACI	CCGC	5 cut(s)	693, 697, 701, 779, 795
BspCNI	CTCAG	2 cut(s)	381, 850
BspDI	ATCGAT	1 cut(s)	152
BspEI	TCCGGA	1 cut(s)	562
BspFNI	CGCG	5 cut(s)	699, 701, 797, 813, 815
BspLI	GGNNCC	3 cut(s)	168, 247, 572
BspMAI	CTGCAG	1 cut(s)	491
BspMI	ACCTGC	1 cut(s)	494
BspOI	GCTAGC	1 cut(s)	524
BspPI	GGATC	3 cut(s)	157, 495, 712
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	332
BsrFI	RCCGGY	3 cut(s)	441, 567, 757
BssAI	RCCGGY	3 cut(s)	441, 567, 757
BssECI	CCNNGG	7 cut(s)	16, 175, 211, 241, 307, 343, 596
BssHII	GCGCGC	1 cut(s)	811
BssMI	GATC	6 cut(s)	149, 153, 500, 541, 683, 717
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	2 cut(s)	243, 309
Bst6I	CTCTTC	2 cut(s)	458, 469
BstC8I	GCNNGC	9 cut(s)	364, 494, 522, 587, 655, 697, 711, 770, 813
BstDEI	CTNAG	3 cut(s)	368, 410, 837
BstDSI	CCRYGG	1 cut(s)	596
BstF5I	GGATG	4 cut(s)	364, 430, 474, 745
BstFNI	CGCG	5 cut(s)	699, 701, 797, 813, 815
BstH2I	RGCGCY	1 cut(s)	846
BstHHI	GCGC	5 cut(s)	701, 715, 813, 815, 845
BstKTI	GATC	6 cut(s)	152, 156, 503, 544, 686, 720
BstMAI	GTCTC	4 cut(s)	149, 266, 332, 558
BstMBI	GATC	6 cut(s)	149, 153, 500, 541, 683, 717
BstMWI	GCNNNNNNNGC	7 cut(s)	654, 696, 701, 710, 778, 803, 812
BstNI	CCWGG	2 cut(s)	243, 309
BstSCI	CCNGG	5 cut(s)	174, 175, 241, 307, 456
BstSFI	CTRYAG	1 cut(s)	487
BstUI	CGCG	5 cut(s)	699, 701, 797, 813, 815
BstV1I	GCAGC	4 cut(s)	501, 737, 801, 842
BstX2I	RGATCY	1 cut(s)	717
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	717
Bsu15I	ATCGAT	1 cut(s)	152
BsuTUI	ATCGAT	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	596
BtsCI	GGATG	4 cut(s)	364, 430, 474, 745
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	9 cut(s)	364, 494, 522, 587, 655, 697, 711, 770, 813
CfoI	GCGC	5 cut(s)	701, 715, 813, 815, 845
Cfr10I	RCCGGY	3 cut(s)	441, 567, 757
Cfr13I	GGNCC	7 cut(s)	167, 233, 299, 428, 565, 570, 600
Cfr9I	CCCGGG	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	152
CpoI	CGGWCCG	1 cut(s)	565
CseI	GACGC	2 cut(s)	786, 804
Csp6I	GTAC	2 cut(s)	246, 312
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CspI	CGGWCCG	1 cut(s)	565
CviQI	GTAC	2 cut(s)	246, 312
DdeI	CTNAG	3 cut(s)	368, 410, 837
DpnI	GATC	6 cut(s)	151, 155, 502, 543, 685, 719
DpnII	GATC	6 cut(s)	149, 153, 500, 541, 683, 717
Eam1104I	CTCTTC	2 cut(s)	458, 469
EarI	CTCTTC	2 cut(s)	458, 469
Eco130I	CCWWGG	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	2 cut(s)	167, 565
Eco88I	CYCGRG	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	241, 307
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	558
FaiI	YATR	4 cut(s)	89, 142, 401, 627
FaqI	GGGAC	1 cut(s)	330
FauI	CCCGC	3 cut(s)	700, 704, 786
Fnu4HI	GCNGC	5 cut(s)	490, 702, 726, 790, 831
FokI	GGATG	4 cut(s)	371, 437, 461, 732
Fsp4HI	GCNGC	5 cut(s)	490, 702, 726, 790, 831
FspBI	CTAG	6 cut(s)	171, 237, 521, 534, 765, 850
FspI	TGCGCA	1 cut(s)	714
GlaI	GCGC	5 cut(s)	700, 714, 812, 814, 844
GluI	GCNGC	5 cut(s)	490, 702, 726, 790, 831
GsaI	CCCAGC	4 cut(s)	577, 653, 725, 811
GsuI	CTGGAG	2 cut(s)	736, 805
HaeII	RGCGCY	1 cut(s)	846
HapII	CCGG	8 cut(s)	176, 231, 297, 442, 458, 563, 568, 758
HgaI	GACGC	2 cut(s)	786, 804
HhaI	GCGC	5 cut(s)	701, 715, 813, 815, 845
Hin6I	GCGC	5 cut(s)	699, 713, 811, 813, 843
HinP1I	GCGC	5 cut(s)	699, 713, 811, 813, 843
HincII	GTYRAC	1 cut(s)	509
HindII	GTYRAC	1 cut(s)	509
HinfI	GANTC	2 cut(s)	161, 293
HpaII	CCGG	8 cut(s)	176, 231, 297, 442, 458, 563, 568, 758
HphI	GGTGA	2 cut(s)	597, 602
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	3 cut(s)	149, 347, 840
Hpy188III	TCNNGA	4 cut(s)	394, 478, 563, 753
Hpy8I	GTNNAC	1 cut(s)	509
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	4 cut(s)	275, 478, 641, 689
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	474, 489
HpyF10VI	GCNNNNNNNGC	7 cut(s)	654, 696, 701, 710, 778, 803, 812
HpyF3I	CTNAG	3 cut(s)	368, 410, 837
HpySE526I	ACGT	1 cut(s)	76
HspAI	GCGC	5 cut(s)	699, 713, 811, 813, 843
Kpn2I	TCCGGA	1 cut(s)	562
KpnI	GGTACC	1 cut(s)	249
Kzo9I	GATC	6 cut(s)	149, 153, 500, 541, 683, 717
LmnI	GCTCC	2 cut(s)	113, 797
Lsp1109I	GCAGC	4 cut(s)	501, 737, 801, 842
LweI	GCATC	2 cut(s)	349, 483
MaeI	CTAG	6 cut(s)	171, 237, 521, 534, 765, 850
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	2 cut(s)	259, 798
MalI	GATC	6 cut(s)	151, 155, 502, 543, 685, 719
MboI	GATC	6 cut(s)	149, 153, 500, 541, 683, 717
MboII	GAAGA	3 cut(s)	231, 445, 456
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	2 cut(s)	54, 323
MlyI	GAGTC	1 cut(s)	170
MroI	TCCGGA	1 cut(s)	562
MroXI	GAANNNNTTC	2 cut(s)	191, 226
MseI	TTAA	3 cut(s)	288, 354, 420
MspI	CCGG	8 cut(s)	176, 231, 297, 442, 458, 563, 568, 758
MspR9I	CCNGG	5 cut(s)	176, 177, 243, 309, 458
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	2 cut(s)	243, 309
MvnI	CGCG	5 cut(s)	699, 701, 797, 813, 815
MwoI	GCNNNNNNNGC	7 cut(s)	654, 696, 701, 710, 778, 803, 812
NciI	CCSGG	3 cut(s)	176, 177, 458
NdeII	GATC	6 cut(s)	149, 153, 500, 541, 683, 717
NheI	GCTAGC	1 cut(s)	520
NlaIV	GGNNCC	3 cut(s)	168, 247, 572
NmuCI	GTSAC	2 cut(s)	259, 798
NsbI	TGCGCA	1 cut(s)	714
PaqCI	CACCTGC	1 cut(s)	494
PauI	GCGCGC	1 cut(s)	811
PctI	GAATGC	1 cut(s)	547
PdmI	GAANNNNTTC	2 cut(s)	191, 226
PfeI	GAWTC	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	5 cut(s)	491, 703, 727, 791, 832
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	241, 307
PspFI	CCCAGC	4 cut(s)	573, 649, 721, 807
PspGI	CCWGG	2 cut(s)	241, 307
PspN4I	GGNNCC	3 cut(s)	168, 247, 572
PspPI	GGNCC	7 cut(s)	167, 233, 299, 428, 565, 570, 600
PspPPI	RGGWCCY	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	717
PteI	GCGCGC	1 cut(s)	811
RsaI	GTAC	2 cut(s)	247, 313
RsaNI	GTAC	2 cut(s)	246, 312
Rsr2I	CGGWCCG	1 cut(s)	565
RsrII	CGGWCCG	1 cut(s)	565
SaqAI	TTAA	3 cut(s)	288, 354, 420
SatI	GCNGC	5 cut(s)	490, 702, 726, 790, 831
Sau3AI	GATC	6 cut(s)	149, 153, 500, 541, 683, 717
Sau96I	GGNCC	7 cut(s)	167, 233, 299, 428, 565, 570, 600
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	5 cut(s)	176, 177, 243, 309, 458
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	9 cut(s)	79, 228, 336, 453, 488, 610, 624, 736, 794
SfaNI	GCATC	2 cut(s)	349, 483
SfcI	CTRYAG	1 cut(s)	487
SinI	GGWCC	2 cut(s)	167, 565
SmaI	CCCGGG	1 cut(s)	177
Sse9I	AATT	2 cut(s)	54, 323
SsiI	CCGC	5 cut(s)	693, 697, 701, 779, 795
SspMI	CTAG	6 cut(s)	171, 237, 521, 534, 765, 850
StyD4I	CCNGG	5 cut(s)	174, 175, 241, 307, 456
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	7 cut(s)	73, 81, 152, 279, 499, 682, 742
TasI	AATT	2 cut(s)	54, 323
TauI	GCSGC	1 cut(s)	704
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	3 cut(s)	288, 354, 420
Tru9I	TTAA	3 cut(s)	288, 354, 420
TseFI	GTSAC	2 cut(s)	259, 798
TseI	GCWGC	4 cut(s)	489, 725, 789, 830
Tsp45I	GTSAC	2 cut(s)	259, 798
TspMI	CCCGGG	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	167, 565
XapI	RAATTY	1 cut(s)	323
XmaI	CCCGGG	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	191, 226
XspI	CTAG	6 cut(s)	171, 237, 521, 534, 765, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.