Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Reverse (-)

11109884 .. 11110495

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACTACCAAGTTCTTCAGTTTCATTTTGTTGCTGCTTTTGCTCAACTCTACATTCATTGCAGTATGTGCTCGGCCCTTGAATATCATGAAGTATAGAAGCTCTGGTTTTGGAGCAACTGAAGGTTTCTTTGACGGGTTATCACTTGGAGCCATCAAGCAATCGGGACCTAGTCCCGGTGAGGGGCACAAGTTTACGAACAAACAAACTCTCGGAGGGATTAAAAACTCGGGTCCAAGTCCTGGCACAGGAAACGCATTTACAAATGTTGAGACTCTAGGAGGGATTAAGGACTCCGGCCCAAGCCCTGGGACTGGAAACAAATTCACGAATGTTGAGACTCTTGGTGGAATTAAGGACTCAGGTCCAAGCCCTGGTACGGGAAACAAATTCACAAATGTTGAGACTCTCGGTGGAATTAAGGACTCAGGTCCAAGCCCTGGTACAGGAAACAAATTCACAAATGTTGAGACTCTCGGAGGGATTAAGGACTCTGGCCCAAGCCCTGGTACAGGAAACAAAGTCACAAATGTTGAGACACTTGGCGGAATTAAGGACTCGGGCCCAAGCCCTGGTACTGGAAACAAATTTACAGACAACACCCATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

20.6

Weight (kDa)

9.21

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	6 cut(s)	242, 308, 374, 440, 506, 572
AciI	CCGC	1 cut(s)	546
AcsI	RAATTY	4 cut(s)	323, 389, 455, 587
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	4 cut(s)	379, 445, 511, 577
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	6 cut(s)	241, 307, 373, 439, 505, 571
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	5 cut(s)	266, 332, 398, 464, 530
Ama87I	CYCGRG	2 cut(s)	229, 559
AoxI	GGCC	4 cut(s)	74, 298, 496, 562
ApaI	GGGCCC	1 cut(s)	566
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	4 cut(s)	323, 389, 455, 587
AspS9I	GGNCC	9 cut(s)	75, 167, 233, 299, 365, 431, 497, 562, 563
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	2 cut(s)	229, 559
AvaII	GGWCC	4 cut(s)	167, 233, 365, 431
BaeGI	GKGCMC	2 cut(s)	189, 566
BanII	GRGCYC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	6 cut(s)	243, 309, 375, 441, 507, 573
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	5 cut(s)	266, 332, 398, 464, 530
BfaI	CTAG	2 cut(s)	171, 278
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	7 cut(s)	177, 243, 309, 375, 441, 507, 573
Bme18I	GGWCC	4 cut(s)	167, 233, 365, 431
BmeT110I	CYCGRG	2 cut(s)	229, 559
BmgT120I	GGNCC	9 cut(s)	75, 167, 233, 299, 365, 431, 497, 562, 563
BmiI	GGNNCC	4 cut(s)	151, 168, 234, 564
BmrFI	CCNGG	7 cut(s)	177, 243, 309, 375, 441, 507, 573
BoxI	GACNNNNGTC	2 cut(s)	363, 429
BpuMI	CCSGG	1 cut(s)	177
BsaJI	CCNNGG	6 cut(s)	307, 308, 373, 439, 505, 571
Bse1I	ACTGG	2 cut(s)	319, 583
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	6 cut(s)	243, 309, 375, 441, 507, 573
BseDI	CCNNGG	6 cut(s)	307, 308, 373, 439, 505, 571
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	375, 441
BseNI	ACTGG	2 cut(s)	319, 583
BseSI	GKGCMC	2 cut(s)	189, 566
BseXI	GCAGC	1 cut(s)	21
BshFI	GGCC	4 cut(s)	76, 300, 498, 564
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	2 cut(s)	229, 559
BsiSI	CCGG	2 cut(s)	177, 297
BslFI	GGGAC	3 cut(s)	159, 180, 325
BsmAI	GTCTC	5 cut(s)	266, 332, 398, 464, 530
BsmFI	GGGAC	3 cut(s)	159, 180, 325
BsnI	GGCC	4 cut(s)	76, 300, 498, 564
BsoBI	CYCGRG	2 cut(s)	229, 559
Bsp120I	GGGCCC	1 cut(s)	562
Bsp1286I	GDGCHC	3 cut(s)	73, 189, 566
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	4 cut(s)	76, 300, 498, 564
BspCNI	CTCAG	2 cut(s)	374, 440
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	4 cut(s)	151, 168, 234, 564
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	319, 583
BssECI	CCNNGG	6 cut(s)	307, 308, 373, 439, 505, 571
Bst2UI	CCWGG	6 cut(s)	243, 309, 375, 441, 507, 573
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	361, 427
BstENI	CCTNNNNNAGG	3 cut(s)	246, 444, 510
BstMAI	GTCTC	5 cut(s)	266, 332, 398, 464, 530
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 68
BstNI	CCWGG	6 cut(s)	243, 309, 375, 441, 507, 573
BstPAI	GACNNNNGTC	2 cut(s)	363, 429
BstSCI	CCNGG	7 cut(s)	175, 241, 307, 373, 439, 505, 571
BstSLI	GKGCMC	2 cut(s)	189, 566
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	76, 300, 498, 564
CciI	TCATGA	1 cut(s)	87
Cfr13I	GGNCC	9 cut(s)	75, 167, 233, 299, 365, 431, 497, 562, 563
Csp6I	GTAC	4 cut(s)	378, 444, 510, 576
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	4 cut(s)	378, 444, 510, 576
DdeI	CTNAG	2 cut(s)	361, 427
EciI	GGCGGA	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	566
Eco47I	GGWCC	4 cut(s)	167, 233, 365, 431
Eco57I	CTGAAG	1 cut(s)	141
Eco88I	CYCGRG	2 cut(s)	229, 559
EcoNI	CCTNNNNNAGG	3 cut(s)	246, 444, 510
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	6 cut(s)	241, 307, 373, 439, 505, 571
EcoT38I	GRGCYC	1 cut(s)	566
FaeI	CATG	1 cut(s)	91
FaiI	YATR	3 cut(s)	67, 89, 96
FaqI	GGGAC	3 cut(s)	159, 180, 325
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	566
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	2 cut(s)	171, 278
GluI	GCNGC	1 cut(s)	35
HaeIII	GGCC	4 cut(s)	76, 300, 498, 564
HapII	CCGG	2 cut(s)	177, 297
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	9 cut(s)	274, 293, 340, 359, 406, 425, 472, 491, 557
HpaII	CCGG	2 cut(s)	177, 297
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	2 cut(s)	215, 479
Hpy188III	TCNNGA	3 cut(s)	88, 165, 328
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 68
HpyF3I	CTNAG	2 cut(s)	361, 427
Hsp92II	CATG	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	113, 149
Lsp1109I	GCAGC	1 cut(s)	21
MaeI	CTAG	2 cut(s)	171, 278
MaeIII	GTNAC	1 cut(s)	523
MboII	GAAGA	1 cut(s)	7
MhlI	GDGCHC	3 cut(s)	73, 189, 566
MluCI	AATT	7 cut(s)	323, 351, 389, 417, 455, 549, 587
MlyI	GAGTC	9 cut(s)	268, 287, 334, 353, 400, 419, 466, 485, 551
MnlI	CCTC	4 cut(s)	175, 209, 275, 473
MseI	TTAA	6 cut(s)	222, 288, 354, 420, 486, 552
MspI	CCGG	2 cut(s)	177, 297
MspR9I	CCNGG	7 cut(s)	177, 243, 309, 375, 441, 507, 573
MvaI	CCWGG	6 cut(s)	243, 309, 375, 441, 507, 573
MwoI	GCNNNNNNNGC	2 cut(s)	40, 68
NciI	CCSGG	1 cut(s)	177
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	4 cut(s)	151, 168, 234, 564
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	523
PagI	TCATGA	1 cut(s)	87
PasI	CCCWGGG	1 cut(s)	308
PflFI	GACNNNGTC	1 cut(s)	171
PflMI	CCANNNNNTGG	6 cut(s)	242, 308, 374, 440, 506, 572
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	9 cut(s)	268, 287, 334, 353, 400, 419, 466, 485, 551
PpsI	GAGTC	9 cut(s)	268, 287, 334, 353, 400, 419, 466, 485, 551
PpuMI	RGGWCCY	1 cut(s)	167
PshAI	GACNNNNGTC	2 cut(s)	363, 429
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	6 cut(s)	241, 307, 373, 439, 505, 571
PspGI	CCWGG	6 cut(s)	241, 307, 373, 439, 505, 571
PspN4I	GGNNCC	4 cut(s)	151, 168, 234, 564
PspOMI	GGGCCC	1 cut(s)	562
PspPI	GGNCC	9 cut(s)	75, 167, 233, 299, 365, 431, 497, 562, 563
PspPPI	RGGWCCY	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	171
RsaI	GTAC	4 cut(s)	379, 445, 511, 577
RsaNI	GTAC	4 cut(s)	378, 444, 510, 576
SaqAI	TTAA	6 cut(s)	222, 288, 354, 420, 486, 552
SatI	GCNGC	1 cut(s)	35
Sau96I	GGNCC	9 cut(s)	75, 167, 233, 299, 365, 431, 497, 562, 563
SchI	GAGTC	9 cut(s)	268, 287, 334, 353, 400, 419, 466, 485, 551
ScrFI	CCNGG	7 cut(s)	177, 243, 309, 375, 441, 507, 573
SduI	GDGCHC	3 cut(s)	73, 189, 566
SetI	ASST	5 cut(s)	104, 127, 172, 367, 433
SinI	GGWCC	4 cut(s)	167, 233, 365, 431
Sse9I	AATT	7 cut(s)	323, 351, 389, 417, 455, 549, 587
SsiI	CCGC	1 cut(s)	546
SspMI	CTAG	2 cut(s)	171, 278
StyD4I	CCNGG	7 cut(s)	175, 241, 307, 373, 439, 505, 571
TasI	AATT	7 cut(s)	323, 351, 389, 417, 455, 549, 587
Tru1I	TTAA	6 cut(s)	222, 288, 354, 420, 486, 552
Tru9I	TTAA	6 cut(s)	222, 288, 354, 420, 486, 552
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	3 cut(s)	13, 46, 104
Tth111I	GACNNNGTC	1 cut(s)	171
Van91I	CCANNNNNTGG	6 cut(s)	242, 308, 374, 440, 506, 572
VpaK11BI	GGWCC	4 cut(s)	167, 233, 365, 431
XagI	CCTNNNNNAGG	3 cut(s)	246, 444, 510
XapI	RAATTY	4 cut(s)	323, 389, 455, 587
XspI	CTAG	2 cut(s)	171, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.