Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Reverse (-)

19701401 .. 19701793

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAGTACAGAAGCTCTAGTTTTGGAGCAGTTGAAGCTTTCTTTGATGGGTTAGCACTTGGAGCCATCAAGGAATCGGGCCCTAGCCCGGGCGAGGGGCACAAGTTTACGAACCAACAAACTCTCGGAGGGATTAAAAACTCAGGTCCAAGTCCTGGTACAGGAAACGAGTTTACAAATGTTGAGACTCTAGGTGGGATTAAGAATTCTGGCCCAAGTCCTGGTACTGGAAACAAATTCATAAATGTTGCGATTCTCGGAGGAATTAAGGACTCCGGTCCAAGCCCTGGTATGGGAAACAAATTCACGAATGTTGAGACTCTCGGAGGGATTAAGGACTCGGATCCAAGTCCTGGTCAAGGAAACAAATTTACAGACAACATTCATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

13.23

Weight (kDa)

6.72

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	4 cut(s)	155, 221, 287, 353
AclWI	GGATC	2 cut(s)	338, 351
AcsI	RAATTY	4 cut(s)	205, 236, 302, 368
AfaI	GTAC	3 cut(s)	8, 160, 226
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	4 cut(s)	154, 220, 286, 352
AluBI	AGCT	2 cut(s)	15, 38
AluI	AGCT	2 cut(s)	15, 38
Alw26I	GTCTC	2 cut(s)	179, 311
AlwI	GGATC	2 cut(s)	338, 351
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	2 cut(s)	79, 211
ApaI	GGGCCC	1 cut(s)	83
ApoI	RAATTY	4 cut(s)	205, 236, 302, 368
AspS9I	GGNCC	5 cut(s)	79, 80, 146, 212, 278
AsuC2I	CCSGG	2 cut(s)	89, 90
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	146, 278
BaeGI	GKGCMC	2 cut(s)	83, 102
BamHI	GGATCC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	83
BccI	CCATC	2 cut(s)	41, 74
BciT130I	CCWGG	4 cut(s)	156, 222, 288, 354
BcnI	CCSGG	2 cut(s)	89, 90
BcoDI	GTCTC	2 cut(s)	179, 311
BfaI	CTAG	3 cut(s)	18, 84, 191
Bme1390I	CCNGG	6 cut(s)	89, 90, 156, 222, 288, 354
Bme18I	GGWCC	2 cut(s)	146, 278
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	5 cut(s)	79, 80, 146, 212, 278
BmiI	GGNNCC	3 cut(s)	64, 81, 345
BmrFI	CCNGG	6 cut(s)	89, 90, 156, 222, 288, 354
BoxI	GACNNNNGTC	1 cut(s)	276
BpuMI	CCSGG	2 cut(s)	89, 90
BsaJI	CCNNGG	2 cut(s)	88, 286
BsaWI	WCCGGW	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	4 cut(s)	156, 222, 288, 354
BseDI	CCNNGG	2 cut(s)	88, 286
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	232
BseSI	GKGCMC	2 cut(s)	83, 102
BshFI	GGCC	2 cut(s)	81, 213
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	89, 276
BsmAI	GTCTC	2 cut(s)	179, 311
BsnI	GGCC	2 cut(s)	81, 213
BsoBI	CYCGRG	1 cut(s)	88
Bsp120I	GGGCCC	1 cut(s)	79
Bsp1286I	GDGCHC	2 cut(s)	83, 102
Bsp143I	GATC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	81, 213
BspCNI	CTCAG	1 cut(s)	155
BspLI	GGNNCC	3 cut(s)	64, 81, 345
BspPI	GGATC	2 cut(s)	338, 351
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	88, 286
BssMI	GATC	1 cut(s)	343
Bst2UI	CCWGG	4 cut(s)	156, 222, 288, 354
BstDEI	CTNAG	1 cut(s)	142
BstENI	CCTNNNNNAGG	2 cut(s)	159, 357
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	2 cut(s)	179, 311
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 62
BstNI	CCWGG	4 cut(s)	156, 222, 288, 354
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	6 cut(s)	87, 88, 154, 220, 286, 352
BstSLI	GKGCMC	2 cut(s)	83, 102
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	81, 213
Cfr13I	GGNCC	5 cut(s)	79, 80, 146, 212, 278
Cfr9I	CCCGGG	1 cut(s)	88
Csp6I	GTAC	3 cut(s)	7, 159, 225
CviJI	RGCY	7 cut(s)	15, 38, 65, 81, 87, 213, 285
CviKI_1	RGCY	7 cut(s)	15, 38, 65, 81, 87, 213, 285
CviQI	GTAC	3 cut(s)	7, 159, 225
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	83
Eco47I	GGWCC	2 cut(s)	146, 278
Eco88I	CYCGRG	1 cut(s)	88
EcoNI	CCTNNNNNAGG	2 cut(s)	159, 357
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	205
EcoRII	CCWGG	4 cut(s)	154, 220, 286, 352
EcoT38I	GRGCYC	1 cut(s)	83
FaiI	YATR	2 cut(s)	242, 293
FriOI	GRGCYC	1 cut(s)	83
FspBI	CTAG	3 cut(s)	18, 84, 191
HaeIII	GGCC	2 cut(s)	81, 213
HapII	CCGG	2 cut(s)	89, 276
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	6 cut(s)	74, 187, 253, 272, 319, 338
HpaII	CCGG	2 cut(s)	89, 276
Hpy166II	GTNNAC	2 cut(s)	108, 174
Hpy188I	TCNGA	4 cut(s)	128, 260, 326, 343
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	2 cut(s)	108, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 62
HpyF3I	CTNAG	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	2 cut(s)	26, 62
MaeI	CTAG	3 cut(s)	18, 84, 191
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	83, 102
MluCI	AATT	5 cut(s)	205, 236, 264, 302, 368
MlyI	GAGTC	4 cut(s)	181, 266, 313, 332
MnlI	CCTC	4 cut(s)	88, 122, 254, 320
MseI	TTAA	4 cut(s)	135, 201, 267, 333
MspI	CCGG	2 cut(s)	89, 276
MspR9I	CCNGG	6 cut(s)	89, 90, 156, 222, 288, 354
MvaI	CCWGG	4 cut(s)	156, 222, 288, 354
MwoI	GCNNNNNNNGC	2 cut(s)	35, 62
NciI	CCSGG	2 cut(s)	89, 90
NdeII	GATC	1 cut(s)	343
NlaIV	GGNNCC	3 cut(s)	64, 81, 345
PfeI	GAWTC	2 cut(s)	74, 253
PflMI	CCANNNNNTGG	4 cut(s)	155, 221, 287, 353
PleI	GAGTC	4 cut(s)	181, 266, 313, 332
PpsI	GAGTC	4 cut(s)	181, 266, 313, 332
PshAI	GACNNNNGTC	1 cut(s)	276
Psp6I	CCWGG	4 cut(s)	154, 220, 286, 352
PspGI	CCWGG	4 cut(s)	154, 220, 286, 352
PspN4I	GGNNCC	3 cut(s)	64, 81, 345
PspOMI	GGGCCC	1 cut(s)	79
PspPI	GGNCC	5 cut(s)	79, 80, 146, 212, 278
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	3 cut(s)	8, 160, 226
RsaNI	GTAC	3 cut(s)	7, 159, 225
SaqAI	TTAA	4 cut(s)	135, 201, 267, 333
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	5 cut(s)	79, 80, 146, 212, 278
SchI	GAGTC	4 cut(s)	181, 266, 313, 332
ScrFI	CCNGG	6 cut(s)	89, 90, 156, 222, 288, 354
SduI	GDGCHC	2 cut(s)	83, 102
SetI	ASST	4 cut(s)	17, 40, 148, 196
SinI	GGWCC	2 cut(s)	146, 278
SmaI	CCCGGG	1 cut(s)	90
SrfI	GCCCGGGC	1 cut(s)	90
Sse9I	AATT	5 cut(s)	205, 236, 264, 302, 368
SspMI	CTAG	3 cut(s)	18, 84, 191
StyD4I	CCNGG	6 cut(s)	87, 88, 154, 220, 286, 352
TasI	AATT	5 cut(s)	205, 236, 264, 302, 368
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	2 cut(s)	74, 253
Tru1I	TTAA	4 cut(s)	135, 201, 267, 333
Tru9I	TTAA	4 cut(s)	135, 201, 267, 333
TspDTI	ATGAA	3 cut(s)	17, 229, 374
TspMI	CCCGGG	1 cut(s)	88
Van91I	CCANNNNNTGG	4 cut(s)	155, 221, 287, 353
VpaK11BI	GGWCC	2 cut(s)	146, 278
XagI	CCTNNNNNAGG	2 cut(s)	159, 357
XapI	RAATTY	4 cut(s)	205, 236, 302, 368
XmaI	CCCGGG	1 cut(s)	88
XspI	CTAG	3 cut(s)	18, 84, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.