Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Reverse (-)

15907997 .. 15908611

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1179300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACTACCAAGTTCTTCAGTTTCGTTTTGCTGCTGCTTTTGCTCAACTCTACATTCATTGCAGTAAGTGCTCGGCCCTTGAATATCATGAAGTACAGAAGCTCTGGTTTTGGAGCAACTGGAGGAGGTTTCTTTGATGGGTTATCACTTGGAGCCATCAAGCAATCGGGACCTAGCCCCGGTGAGGGGCACAAGCTTACGAACAAACAAACTCTCGGAGGGATTAAAACCTCGGGTCCAAGTCCTGGTTCAGGAAATGCATTTACAAATGTTGAGATTCTAGGAGGGATTAAGGACTCCGGCCCAAGCCCTGGGTCTGGAAACAAATTCACAAATGTTGAGACTCTCGGAGGGATTAAGGATTCCGGTCCAACTCCTAGTACAGGAAACAAATTCACAAATGTTGAGACTCTTGGTGGAATTAAGGAAGCGGGTCCAAGCCCTGGTACGGGAAACAAATTCACAAATGTTGAGACTCTCGGAGCGATTAAGGACTCTGGCCCAAGCCTTGGTACGGGAAATAAATCCACAAATGTTGAGACTCTTGGTGGAATTAAGGACTCGGGTCCAAGCCCTGGTACTGGAAACAAATTTACAGACAACATCCATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

20.56

Weight (kDa)

9.49

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	5 cut(s)	245, 311, 443, 509, 575
AciI	CCGC	1 cut(s)	431
AcsI	RAATTY	4 cut(s)	326, 392, 458, 590
AfaI	GTAC	5 cut(s)	95, 382, 448, 514, 580
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	4 cut(s)	244, 310, 442, 574
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	2 cut(s)	102, 196
AluI	AGCT	2 cut(s)	102, 196
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	4 cut(s)	335, 401, 467, 533
Ama87I	CYCGRG	2 cut(s)	232, 562
AoxI	GGCC	3 cut(s)	74, 301, 499
ApeKI	GCWGC	2 cut(s)	31, 34
ApoI	RAATTY	4 cut(s)	326, 392, 458, 590
AspS9I	GGNCC	8 cut(s)	75, 170, 236, 302, 368, 434, 500, 566
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	2 cut(s)	232, 562
AvaII	GGWCC	5 cut(s)	170, 236, 368, 434, 566
BaeGI	GKGCMC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	18, 21
BccI	CCATC	2 cut(s)	131, 164
BciT130I	CCWGG	4 cut(s)	246, 312, 444, 576
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	4 cut(s)	335, 401, 467, 533
BfaI	CTAG	3 cut(s)	174, 281, 378
BisI	GCNGC	2 cut(s)	32, 35
BlsI	GCNGC	2 cut(s)	33, 36
Bme1390I	CCNGG	5 cut(s)	180, 246, 312, 444, 576
Bme18I	GGWCC	5 cut(s)	170, 236, 368, 434, 566
BmeT110I	CYCGRG	2 cut(s)	232, 562
BmgT120I	GGNCC	8 cut(s)	75, 170, 236, 302, 368, 434, 500, 566
BmiI	GGNNCC	5 cut(s)	154, 171, 237, 435, 567
BmrFI	CCNGG	5 cut(s)	180, 246, 312, 444, 576
BoxI	GACNNNNGTC	1 cut(s)	564
BpmI	CTGGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	180
BsaJI	CCNNGG	7 cut(s)	178, 231, 310, 311, 442, 508, 574
BsaWI	WCCGGW	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	124, 586
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	4 cut(s)	246, 312, 444, 576
BseDI	CCNNGG	7 cut(s)	178, 231, 310, 311, 442, 508, 574
BseGI	GGATG	1 cut(s)	603
BseMI	GCAATG	1 cut(s)	57
BseNI	ACTGG	2 cut(s)	124, 586
BseRI	GAGGAG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	18, 21
BshFI	GGCC	3 cut(s)	76, 303, 501
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	2 cut(s)	232, 562
BsiSI	CCGG	3 cut(s)	180, 300, 366
BslFI	GGGAC	1 cut(s)	183
BsmAI	GTCTC	4 cut(s)	335, 401, 467, 533
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	3 cut(s)	76, 303, 501
BsoBI	CYCGRG	2 cut(s)	232, 562
Bsp1286I	GDGCHC	2 cut(s)	73, 192
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	3 cut(s)	76, 303, 501
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	5 cut(s)	154, 171, 237, 435, 567
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	124, 586
BssECI	CCNNGG	7 cut(s)	178, 231, 310, 311, 442, 508, 574
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	4 cut(s)	246, 312, 444, 576
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstENI	CCTNNNNNAGG	2 cut(s)	249, 381
BstF5I	GGATG	1 cut(s)	603
BstMAI	GTCTC	4 cut(s)	335, 401, 467, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 68
BstNI	CCWGG	4 cut(s)	246, 312, 444, 576
BstPAI	GACNNNNGTC	1 cut(s)	564
BstSCI	CCNGG	5 cut(s)	178, 244, 310, 442, 574
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	18, 21
BsuRI	GGCC	3 cut(s)	76, 303, 501
BtsCI	GGATG	1 cut(s)	603
CciI	TCATGA	1 cut(s)	87
Cfr13I	GGNCC	8 cut(s)	75, 170, 236, 302, 368, 434, 500, 566
Csp6I	GTAC	5 cut(s)	94, 381, 447, 513, 579
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	5 cut(s)	94, 381, 447, 513, 579
Eco130I	CCWWGG	1 cut(s)	508
Eco47I	GGWCC	5 cut(s)	170, 236, 368, 434, 566
Eco88I	CYCGRG	2 cut(s)	232, 562
EcoNI	CCTNNNNNAGG	2 cut(s)	249, 381
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	4 cut(s)	244, 310, 442, 574
EcoT14I	CCWWGG	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	1 cut(s)	91
FaiI	YATR	1 cut(s)	89
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	32, 35
FokI	GGATG	1 cut(s)	590
Fsp4HI	GCNGC	2 cut(s)	32, 35
FspBI	CTAG	3 cut(s)	174, 281, 378
GluI	GCNGC	2 cut(s)	32, 35
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	76, 303, 501
HapII	CCGG	3 cut(s)	180, 300, 366
Hin1II	CATG	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	9 cut(s)	277, 296, 343, 362, 409, 475, 494, 541, 560
HpaII	CCGG	3 cut(s)	180, 300, 366
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	3 cut(s)	218, 350, 482
Hpy188III	TCNNGA	4 cut(s)	88, 168, 252, 318
HpyCH4V	TGCA	2 cut(s)	62, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 68
Hsp92II	CATG	1 cut(s)	91
LmnI	GCTCC	3 cut(s)	113, 152, 482
Lsp1109I	GCAGC	2 cut(s)	18, 21
MaeI	CTAG	3 cut(s)	174, 281, 378
MboII	GAAGA	1 cut(s)	7
MhlI	GDGCHC	2 cut(s)	73, 192
MluCI	AATT	6 cut(s)	326, 392, 420, 458, 552, 590
MlyI	GAGTC	7 cut(s)	290, 337, 403, 469, 488, 535, 554
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	7 cut(s)	116, 119, 178, 212, 241, 278, 344
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	6 cut(s)	225, 291, 357, 423, 489, 555
MspI	CCGG	3 cut(s)	180, 300, 366
MspR9I	CCNGG	5 cut(s)	180, 246, 312, 444, 576
MvaI	CCWGG	4 cut(s)	246, 312, 444, 576
MwoI	GCNNNNNNNGC	2 cut(s)	40, 68
NciI	CCSGG	1 cut(s)	180
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	5 cut(s)	154, 171, 237, 435, 567
NmeAIII	GCCGAG	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	262
PagI	TCATGA	1 cut(s)	87
PasI	CCCWGGG	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	277, 362
PflMI	CCANNNNNTGG	5 cut(s)	245, 311, 443, 509, 575
PkrI	GCNGC	2 cut(s)	33, 36
PleI	GAGTC	7 cut(s)	290, 337, 403, 469, 488, 535, 554
PpsI	GAGTC	7 cut(s)	290, 337, 403, 469, 488, 535, 554
PpuMI	RGGWCCY	1 cut(s)	170
PshAI	GACNNNNGTC	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	170
Psp6I	CCWGG	4 cut(s)	244, 310, 442, 574
PspGI	CCWGG	4 cut(s)	244, 310, 442, 574
PspN4I	GGNNCC	5 cut(s)	154, 171, 237, 435, 567
PspPI	GGNCC	8 cut(s)	75, 170, 236, 302, 368, 434, 500, 566
PspPPI	RGGWCCY	1 cut(s)	170
RsaI	GTAC	5 cut(s)	95, 382, 448, 514, 580
RsaNI	GTAC	5 cut(s)	94, 381, 447, 513, 579
SaqAI	TTAA	6 cut(s)	225, 291, 357, 423, 489, 555
SatI	GCNGC	2 cut(s)	32, 35
Sau96I	GGNCC	8 cut(s)	75, 170, 236, 302, 368, 434, 500, 566
SchI	GAGTC	7 cut(s)	290, 337, 403, 469, 488, 535, 554
ScrFI	CCNGG	5 cut(s)	180, 246, 312, 444, 576
SduI	GDGCHC	2 cut(s)	73, 192
SetI	ASST	5 cut(s)	104, 130, 175, 198, 233
SinI	GGWCC	5 cut(s)	170, 236, 368, 434, 566
Sse9I	AATT	6 cut(s)	326, 392, 420, 458, 552, 590
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	3 cut(s)	174, 281, 378
StyD4I	CCNGG	5 cut(s)	178, 244, 310, 442, 574
StyI	CCWWGG	1 cut(s)	508
TasI	AATT	6 cut(s)	326, 392, 420, 458, 552, 590
TatI	WGTACW	2 cut(s)	93, 380
TfiI	GAWTC	2 cut(s)	277, 362
Tru1I	TTAA	6 cut(s)	225, 291, 357, 423, 489, 555
Tru9I	TTAA	6 cut(s)	225, 291, 357, 423, 489, 555
TseI	GCWGC	2 cut(s)	31, 34
TspDTI	ATGAA	2 cut(s)	46, 104
Van91I	CCANNNNNTGG	5 cut(s)	245, 311, 443, 509, 575
VpaK11BI	GGWCC	5 cut(s)	170, 236, 368, 434, 566
XagI	CCTNNNNNAGG	2 cut(s)	249, 381
XapI	RAATTY	4 cut(s)	326, 392, 458, 590
XspI	CTAG	3 cut(s)	174, 281, 378
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.