Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002124

Physical Location & Seq

Genomic Coordinates Reverse (-)

29231607 .. 29246637

Gene Structure 15031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG156300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGACAACCAAATGCCTCGGTTTCCTTTTGGTCATTGTTTTGCTCAACTCCACATTTCTTGGGGAAAGTGCTCGACGTTTCGATATTATAAAGCACCGCAACTTGTGTCGTGGAGCAATCGGGGGTTTCTTTGACGGCTTCTGTCTCGGATCGATCAAGGAGTCGGGTCCTAGCCCGGGTCAAGGGAACAAGTTCAATGACAACCAAACCCTTGGAGGAAGAAAGGTTTCCGGCCCTAGCCCTGGTACTAGAAACAAAGTCACAAATGTTGAGACACTCGAAGGGGTTAAGGATTCCGGCCCAAGCCCTGGTACGGGACACAAATTTACAAAGGTTGAGACCCTCGGAGGGATTAAGGATGCTGGCCTCAGCCCTGATACAAGAAACTCATTCACGAATATAGATATTCTTAGAGGGATTAAGGATGGCCCAAGCCCTGGTACAGGAAACTCATTTACAAATGTAGATATTTTAGGAGGAATTAAGGATGGGCCAAGCCCAGGGAGGAGAGAGGCTTTGGAGGATCGGTATTCAACCACTCTTAATCTTCAAGGTGATCCCAAACAGGCGTTTTTTGGTGTGTTTGATGGGCATGGAAGTGCAAAAGCTGCTGAATTTGCAGCCCACAACTTAGGAAGAAACATTTTAGATGAAGTTGTGAGGAGGAATGACGAAATGAAACATAGAGATTTGCACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

233

Amino Acids

24.88

Weight (kDa)

9.01

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23270 AT4G37290
fragaria_vesca	FvH4_1g16830 FvH4_2g05100 FvH4_2g05110
malus_domestica	MD02G1179300.v1.1 MD15G1289400.v1.1
prunus_persica	Prupe.3G151900_v2.0.a1 Prupe.6G228500_v2.0.a1 Prupe.8G135500_v2.0.a1
pyrus_communis	pycom02g14530 pycom05g08970 pycom15g25290
rosa_chinensis	RchiOBHm_Chr1g0340091 RchiOBHm_Chr2g0106731 RchiOBHm_Chr6g0255001 RchiOBHm_Chr6g0255011
rosa_laevigata	RLG00000017536 RLG00000029261
rosa_multiflora	Rmu_sc0001215.1_g000004 Rmu_sc0004000.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136830 Rroxscaffold_4G00314000 Rroxscaffold_7G00210430 Rroxscaffold_7G00210440
rosa_rugosa	Rorug01G0136800.1 Rorug02G0138100 Rorug05G0555800 Rorug05G0555900
rosa_samantha	Rh1AG089300 Rh1AG156300 Rh1BG124900 Rh1CG146100 Rh2AG189100 Rh2BG200600 Rh2CG194200 Rh2DG195400 Rh6AG073300 Rh6BG065600 Rh6CG065300 Rh6DG062400
rosa_wichuraiana	Rw1G012820 Rw2G014880 Rw6G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccB7I	CCANNNNNTGG	2 cut(s)	308, 437
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	3 cut(s)	157, 531, 551
AcsI	RAATTY	2 cut(s)	323, 614
AfaI	GTAC	3 cut(s)	247, 313, 442
AgsI	TTSAA	3 cut(s)	196, 534, 551
AjnI	CCWGG	4 cut(s)	241, 307, 436, 499
AluBI	AGCT	1 cut(s)	608
AluI	AGCT	1 cut(s)	608
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	3 cut(s)	149, 266, 332
AlwI	GGATC	3 cut(s)	157, 531, 551
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	5 cut(s)	232, 298, 364, 427, 491
ApeKI	GCWGC	2 cut(s)	608, 620
ApoI	RAATTY	2 cut(s)	323, 614
Asp700I	GAANNNNTTC	2 cut(s)	191, 226
AspS9I	GGNCC	5 cut(s)	167, 233, 299, 428, 491
AsuC2I	CCSGG	2 cut(s)	176, 177
AsuHPI	GGTGA	1 cut(s)	566
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	368
BbvI	GCAGC	2 cut(s)	595, 632
BccI	CCATC	3 cut(s)	419, 482, 581
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	4 cut(s)	243, 309, 438, 501
BcnI	CCSGG	2 cut(s)	176, 177
BcoDI	GTCTC	3 cut(s)	149, 266, 332
BfaI	CTAG	3 cut(s)	171, 237, 249
BisI	GCNGC	2 cut(s)	609, 621
BlsI	GCNGC	2 cut(s)	610, 622
Bme1390I	CCNGG	6 cut(s)	176, 177, 243, 309, 438, 501
Bme18I	GGWCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	5 cut(s)	167, 233, 299, 428, 491
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	6 cut(s)	176, 177, 243, 309, 438, 501
BmsI	GCATC	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	176, 177
Bsa29I	ATCGAT	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	9 cut(s)	16, 175, 211, 241, 307, 343, 436, 499, 500
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
BseBI	CCWGG	4 cut(s)	243, 309, 438, 501
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	9 cut(s)	16, 175, 211, 241, 307, 343, 436, 499, 500
BseGI	GGATG	3 cut(s)	364, 430, 493
BseMII	CTCAG	1 cut(s)	382
BseRI	GAGGAG	2 cut(s)	520, 676
BseXI	GCAGC	2 cut(s)	595, 632
BshFI	GGCC	5 cut(s)	234, 300, 366, 429, 493
BshVI	ATCGAT	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	176, 231, 297
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	3 cut(s)	149, 266, 332
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	5 cut(s)	234, 300, 366, 429, 493
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	4 cut(s)	149, 153, 523, 556
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	5 cut(s)	234, 300, 366, 429, 493
BspCNI	CTCAG	1 cut(s)	381
BspDI	ATCGAT	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	698
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	3 cut(s)	157, 531, 551
BspTNI	GGTCTC	1 cut(s)	332
BssECI	CCNNGG	9 cut(s)	16, 175, 211, 241, 307, 343, 436, 499, 500
BssMI	GATC	4 cut(s)	149, 153, 523, 556
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	4 cut(s)	243, 309, 438, 501
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	3 cut(s)	368, 410, 631
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstF5I	GGATG	3 cut(s)	364, 430, 493
BstKTI	GATC	4 cut(s)	152, 156, 526, 559
BstMAI	GTCTC	3 cut(s)	149, 266, 332
BstMBI	GATC	4 cut(s)	149, 153, 523, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 617
BstNI	CCWGG	4 cut(s)	243, 309, 438, 501
BstSCI	CCNGG	6 cut(s)	174, 175, 241, 307, 436, 499
BstV1I	GCAGC	2 cut(s)	595, 632
BstXI	CCANNNNNNTGG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	152
BsuRI	GGCC	5 cut(s)	234, 300, 366, 429, 493
BsuTUI	ATCGAT	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	364, 430, 493
Cac8I	GCNNGC	1 cut(s)	364
CciI	TCATGA	1 cut(s)	698
Cfr13I	GGNCC	5 cut(s)	167, 233, 299, 428, 491
Cfr9I	CCCGGG	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	246, 312, 441
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	2 cut(s)	593, 699
CviQI	GTAC	3 cut(s)	246, 312, 441
DdeI	CTNAG	3 cut(s)	368, 410, 631
DpnI	GATC	4 cut(s)	151, 155, 525, 558
DpnII	GATC	4 cut(s)	149, 153, 523, 556
Eco130I	CCWWGG	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	4 cut(s)	241, 307, 436, 499
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	2 cut(s)	596, 702
FaiI	YATR	5 cut(s)	89, 401, 594, 684, 700
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	2 cut(s)	592, 698
Fnu4HI	GCNGC	2 cut(s)	609, 621
FokI	GGATG	3 cut(s)	371, 437, 500
Fsp4HI	GCNGC	2 cut(s)	609, 621
FspBI	CTAG	3 cut(s)	171, 237, 249
GluI	GCNGC	2 cut(s)	609, 621
HaeIII	GGCC	5 cut(s)	234, 300, 366, 429, 493
HapII	CCGG	3 cut(s)	176, 231, 297
Hin1II	CATG	2 cut(s)	596, 702
HinfI	GANTC	2 cut(s)	161, 293
HpaII	CCGG	3 cut(s)	176, 231, 297
HphI	GGTGA	1 cut(s)	566
Hpy188I	TCNGA	2 cut(s)	149, 347
Hpy188III	TCNNGA	2 cut(s)	394, 699
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	602, 620, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 617
HpyF3I	CTNAG	3 cut(s)	368, 410, 631
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	596, 702
Kzo9I	GATC	4 cut(s)	149, 153, 523, 556
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	2 cut(s)	595, 632
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	3 cut(s)	171, 237, 249
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	4 cut(s)	151, 155, 525, 558
MboI	GATC	4 cut(s)	149, 153, 523, 556
MboII	GAAGA	3 cut(s)	231, 539, 648
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	3 cut(s)	323, 480, 614
MlyI	GAGTC	1 cut(s)	170
MroXI	GAANNNNTTC	2 cut(s)	191, 226
MseI	TTAA	5 cut(s)	288, 354, 420, 483, 543
MslI	CAYNNNNRTG	1 cut(s)	597
MspI	CCGG	3 cut(s)	176, 231, 297
MspR9I	CCNGG	6 cut(s)	176, 177, 243, 309, 438, 501
MvaI	CCWGG	4 cut(s)	243, 309, 438, 501
MwoI	GCNNNNNNNGC	2 cut(s)	608, 617
NciI	CCSGG	2 cut(s)	176, 177
NdeII	GATC	4 cut(s)	149, 153, 523, 556
NlaIII	CATG	2 cut(s)	596, 702
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	259
PagI	TCATGA	1 cut(s)	698
PasI	CCCWGGG	1 cut(s)	500
PdmI	GAANNNNTTC	2 cut(s)	191, 226
PfeI	GAWTC	1 cut(s)	293
PflMI	CCANNNNNTGG	2 cut(s)	308, 437
PkrI	GCNGC	2 cut(s)	610, 622
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	4 cut(s)	241, 307, 436, 499
PspGI	CCWGG	4 cut(s)	241, 307, 436, 499
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	5 cut(s)	167, 233, 299, 428, 491
PspPPI	RGGWCCY	1 cut(s)	167
RsaI	GTAC	3 cut(s)	247, 313, 442
RsaNI	GTAC	3 cut(s)	246, 312, 441
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	5 cut(s)	288, 354, 420, 483, 543
SatI	GCNGC	2 cut(s)	609, 621
Sau3AI	GATC	4 cut(s)	149, 153, 523, 556
Sau96I	GGNCC	5 cut(s)	167, 233, 299, 428, 491
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	6 cut(s)	176, 177, 243, 309, 438, 501
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	5 cut(s)	79, 228, 336, 556, 610
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	167
SmaI	CCCGGG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	597
Sse9I	AATT	3 cut(s)	323, 480, 614
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	3 cut(s)	171, 237, 249
StyD4I	CCNGG	6 cut(s)	174, 175, 241, 307, 436, 499
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	4 cut(s)	73, 81, 152, 279
TasI	AATT	3 cut(s)	323, 480, 614
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	5 cut(s)	288, 354, 420, 483, 543
Tru9I	TTAA	5 cut(s)	288, 354, 420, 483, 543
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	608, 620
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	666, 692
TspMI	CCCGGG	1 cut(s)	175
Van91I	CCANNNNNTGG	2 cut(s)	308, 437
VpaK11BI	GGWCC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	2 cut(s)	323, 614
XmaI	CCCGGG	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	191, 226
XspI	CTAG	3 cut(s)	171, 237, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.